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Diffstat (limited to 'var/spack/repos/builtin/packages/rmats/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/rmats/package.py | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/rmats/package.py b/var/spack/repos/builtin/packages/rmats/package.py new file mode 100644 index 0000000000..990d5a8f77 --- /dev/null +++ b/var/spack/repos/builtin/packages/rmats/package.py @@ -0,0 +1,32 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + + +from spack import * +from os import symlink + + +class Rmats(Package): + """MATS is a computational tool to detect differential alternative + splicing events from RNA-Seq data.""" + + homepage = "https://rnaseq-mats.sourceforge.net/index.html" + url = "https://downloads.sourceforge.net/project/rnaseq-mats/MATS/rMATS.4.0.2.tgz" + + version('4.0.2', sha256='afab002a9ae836d396909aede96318f6dab6e5818078246419dd563624bf26d1') + + depends_on('python@2.7:', type='run') + depends_on('py-numpy', type=('build', 'run')) + depends_on('openblas') + + def install(self, spec, prefix): + # since the tool is a python script we install it to /usr/lib + install_tree('rMATS-turbo-Linux-UCS4', join_path(prefix.lib, 'rmats')) + + # the script has an appropriate shebang so a quick symlink will do + set_executable(join_path(prefix.lib, 'rmats/rmats.py')) + mkdirp(prefix.bin) + symlink(join_path(prefix.lib, 'rmats/rmats.py'), + join_path(prefix.bin, 'rmats')) |