diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/rna-seqc/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/rna-seqc/package.py | 5 |
1 files changed, 2 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/rna-seqc/package.py b/var/spack/repos/builtin/packages/rna-seqc/package.py index 9fe5bcc096..cc58cb7e0e 100644 --- a/var/spack/repos/builtin/packages/rna-seqc/package.py +++ b/var/spack/repos/builtin/packages/rna-seqc/package.py @@ -23,7 +23,6 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -from shutil import copyfile import os.path @@ -51,12 +50,12 @@ class RnaSeqc(Package): # explicitly codes the path for java and the jar file. script_sh = join_path(os.path.dirname(__file__), "rna-seqc.sh") script = join_path(prefix.bin, "rna-seqc") - copyfile(script_sh, script) + install(script_sh, script) set_executable(script) # Munge the helper script to explicitly point to java and the # jar file. - java = join_path(self.spec['jdk'].prefix, 'bin', 'java') + java = self.spec['jdk'].prefix.bin.java kwargs = {'ignore_absent': False, 'backup': False, 'string': False} filter_file('^java', java, script, **kwargs) filter_file('RNA-SeQC_v{0}.jar', join_path(prefix.bin, jar_file), |