diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/samtools/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/samtools/package.py | 41 |
1 files changed, 18 insertions, 23 deletions
diff --git a/var/spack/repos/builtin/packages/samtools/package.py b/var/spack/repos/builtin/packages/samtools/package.py index ae0acdde47..95949a86c6 100644 --- a/var/spack/repos/builtin/packages/samtools/package.py +++ b/var/spack/repos/builtin/packages/samtools/package.py @@ -1,27 +1,8 @@ -############################################################################## -# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. # -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the NOTICE and LICENSE files for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + from spack import * @@ -33,6 +14,9 @@ class Samtools(Package): homepage = "www.htslib.org" url = "https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2" + version('1.9', 'cca9a40d9b91b007af2ff905cb8b5924') + version('1.8', 'c6e981c92ca00a44656a708c4b52aba3') + version('1.7', '2240175242b5183bfa6baf1483f68023') version('1.6', 'b756f05fd5d1a7042074417edb8c9aea') version('1.4', '8cbd7d2a0ec16d834babcd6c6d85d691') version('1.3.1', 'a7471aa5a1eb7fc9cc4c6491d73c2d88') @@ -40,9 +24,14 @@ class Samtools(Package): depends_on('ncurses') # htslib became standalone @1.3.1, must use corresponding version + depends_on('htslib@1.9', when='@1.9') + depends_on('htslib@1.8', when='@1.8') + depends_on('htslib@1.7', when='@1.7') depends_on('htslib@1.6', when='@1.6') depends_on('htslib@1.4', when='@1.4') depends_on('htslib@1.3.1', when='@1.3.1') + depends_on('zlib', when='@1.7:') + depends_on('bzip2', when='@1.7:') def install(self, spec, prefix): if self.spec.version >= Version('1.3.1'): @@ -53,3 +42,9 @@ class Samtools(Package): else: make("prefix=%s" % prefix) make("prefix=%s" % prefix, "install") + # Install dev headers and libs for legacy apps depending on them + mkdir(prefix.include) + mkdir(prefix.lib) + install('sam.h', prefix.include) + install('bam.h', prefix.include) + install('libbam.a', prefix.lib) |