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Diffstat (limited to 'var/spack/repos/builtin/packages/shoremap/package.py')
-rw-r--r-- | var/spack/repos/builtin/packages/shoremap/package.py | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/shoremap/package.py b/var/spack/repos/builtin/packages/shoremap/package.py new file mode 100644 index 0000000000..cd4623ecaf --- /dev/null +++ b/var/spack/repos/builtin/packages/shoremap/package.py @@ -0,0 +1,35 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Shoremap(MakefilePackage): + """SHOREmap is a computational tool implementing a method that enables + simple and straightforward mapping-by-sequencing analysis. + + Whole genome resequencing of pools of recombinant mutant genomes allows + directly linking phenotypic traits to causal mutations. Such an + analysis, called mapping-by-sequencing, combines classical genetic + mapping and next generation sequencing by relying on selection-induced + patterns within genome-wide allele frequency in pooled genomes.""" + + homepage = "http://bioinfo.mpipz.mpg.de/shoremap/" + url = "http://bioinfo.mpipz.mpg.de/shoremap/SHOREmap_v3.6.tar.gz" + + version('3.6', 'ccc9331189705a139d50f2c161178cb1') + + depends_on('dislin') + + def edit(self, spec, prefix): + makefile = FileFilter('makefile') + makefile.filter(r'-L/usr/lib/', + self.spec['libxt'].libs.search_flags) + makefile.filter(r'-L\./dislin.* -ldislin_d', + self.spec['dislin:d'].libs.ld_flags) + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('SHOREmap', prefix.bin) |