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Diffstat (limited to 'var/spack/repos/builtin/packages/soapdenovo-trans/package.py')
-rw-r--r-- | var/spack/repos/builtin/packages/soapdenovo-trans/package.py | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/soapdenovo-trans/package.py b/var/spack/repos/builtin/packages/soapdenovo-trans/package.py new file mode 100644 index 0000000000..f837ce94ea --- /dev/null +++ b/var/spack/repos/builtin/packages/soapdenovo-trans/package.py @@ -0,0 +1,33 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class SoapdenovoTrans(MakefilePackage): + """SOAPdenovo-Trans is a de novo transcriptome assembler basing on the + SOAPdenovo framework, adapt to alternative splicing and different + expression level among transcripts.""" + + homepage = "http://soap.genomics.org.cn/SOAPdenovo-Trans.html" + url = "https://github.com/aquaskyline/SOAPdenovo-Trans/archive/1.0.4.tar.gz" + + version('1.0.4', 'a3b00b0f743b96141c4d5f1b49f2918c') + + build_directory = 'src' + + def edit(self, spec, prefix): + with working_dir(self.build_directory): + makefile = FileFilter('Makefile') + makefile.filter('CFLAGS= -O3 -fomit-frame-pointer -static', + 'CFLAGS= -O3 -fomit-frame-pointer') + + def build(self, spec, prefix): + with working_dir(self.build_directory): + make() + make('127mer=1', parallel=False) + + def install(self, spec, prefix): + install_tree('.', prefix.bin) |