diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/suite-sparse/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/suite-sparse/package.py | 302 |
1 files changed, 173 insertions, 129 deletions
diff --git a/var/spack/repos/builtin/packages/suite-sparse/package.py b/var/spack/repos/builtin/packages/suite-sparse/package.py index 091139db3f..d2b85a741c 100644 --- a/var/spack/repos/builtin/packages/suite-sparse/package.py +++ b/var/spack/repos/builtin/packages/suite-sparse/package.py @@ -10,77 +10,92 @@ class SuiteSparse(Package): """ SuiteSparse is a suite of sparse matrix algorithms """ - homepage = 'https://people.engr.tamu.edu/davis/suitesparse.html' - url = 'https://github.com/DrTimothyAldenDavis/SuiteSparse/archive/v4.5.3.tar.gz' - git = 'https://github.com/DrTimothyAldenDavis/SuiteSparse.git' - - version('5.10.1', sha256='acb4d1045f48a237e70294b950153e48dce5b5f9ca8190e86c2b8c54ce00a7ee') - version('5.10.0', sha256='4bcc974901c0173acf80c41ee0fd779eb7dce2871d4afa24a5d15b1a468f93e5') - version('5.9.0', sha256='7bdd4811f1cf0767c5fdb5e435817fdadee50b0acdb598f4882ae7b8291a7f24') - version('5.8.1', sha256='06726e471fbaa55f792578f9b4ab282ea9d008cf39ddcc3b42b73400acddef40') - version('5.8.0', sha256='94a9b7134eb4dd82b97f1a22a6b464feb81e73af2dcdf683c6f252285191df1d') - version('5.7.2', sha256='fe3bc7c3bd1efdfa5cffffb5cebf021ff024c83b5daf0ab445429d3d741bd3ad') - version('5.7.1', sha256='5ba5add1663d51a1b6fb128b50fe869b497f3096765ff7f8212f0ede044b9557') - version('5.6.0', sha256='76d34d9f6dafc592b69af14f58c1dc59e24853dcd7c2e8f4c98ffa223f6a1adb') - version('5.5.0', sha256='63c73451734e2bab19d1915796c6776565ea6aea5da4063a9797ecec60da2e3d') - version('5.4.0', sha256='d9d62d539410d66550d0b795503a556830831f50087723cb191a030525eda770') - version('5.3.0', sha256='d8ef4bee4394d2f07299d4688b83bbd98e9d3a2ebbe1c1632144b6f7095ce165') - version('5.2.0', sha256='68c431aef3d9a0b02e97803eb61671c5ecb9d36fd292a807db87067dadb36e53') - version('5.1.2', sha256='97dc5fdc7f78ff5018e6a1fcc841e17a9af4e5a35cebd62df6922349bf12959e') - version('5.1.0', sha256='0b0e03c63e67b04529bb6248808d2a8c82259d40b30fc5a7599f4b6f7bdd4dc6') - version('5.0.0', sha256='2f8694d9978033659f10ceb8bdb19147d3c519a0251b8de84be6ba8824d30517') - version('4.5.6', sha256='1c7b7a265a1d6c606095eb8aa3cb8e27821f1b7f5bc04f28df6d62906e02f4e4') - version('4.5.5', sha256='80d1d9960a6ec70031fecfe9adfe5b1ccd8001a7420efb50d6fa7326ef14af91') - version('4.5.3', sha256='b6965f9198446a502cde48fb0e02236e75fa5700b94c7306fc36599d57b563f4') - - variant('tbb', default=False, description='Build with Intel TBB') - variant('pic', default=True, description='Build position independent code (required to link with shared libraries)') - variant('cuda', default=False, description='Build with CUDA') - variant('openmp', default=False, description='Build with OpenMP') - variant('graphblas', default=False, description='Build with GraphBLAS (takes a long time to compile)') - - depends_on('mpfr@4.0.0:', type=('build', 'link'), when='@5.8.0:') - depends_on('gmp', type=('build', 'link'), when='@5.8.0:') - depends_on('blas') - depends_on('lapack') - depends_on('m4', type='build', when='@5.0.0:') - depends_on('cmake', when='+graphblas @5.2.0:', type='build') - - depends_on('metis@5.1.0', when='@4.5.1:') + + homepage = "https://people.engr.tamu.edu/davis/suitesparse.html" + url = "https://github.com/DrTimothyAldenDavis/SuiteSparse/archive/v4.5.3.tar.gz" + git = "https://github.com/DrTimothyAldenDavis/SuiteSparse.git" + + version("5.10.1", sha256="acb4d1045f48a237e70294b950153e48dce5b5f9ca8190e86c2b8c54ce00a7ee") + version("5.10.0", sha256="4bcc974901c0173acf80c41ee0fd779eb7dce2871d4afa24a5d15b1a468f93e5") + version("5.9.0", sha256="7bdd4811f1cf0767c5fdb5e435817fdadee50b0acdb598f4882ae7b8291a7f24") + version("5.8.1", sha256="06726e471fbaa55f792578f9b4ab282ea9d008cf39ddcc3b42b73400acddef40") + version("5.8.0", sha256="94a9b7134eb4dd82b97f1a22a6b464feb81e73af2dcdf683c6f252285191df1d") + version("5.7.2", sha256="fe3bc7c3bd1efdfa5cffffb5cebf021ff024c83b5daf0ab445429d3d741bd3ad") + version("5.7.1", sha256="5ba5add1663d51a1b6fb128b50fe869b497f3096765ff7f8212f0ede044b9557") + version("5.6.0", sha256="76d34d9f6dafc592b69af14f58c1dc59e24853dcd7c2e8f4c98ffa223f6a1adb") + version("5.5.0", sha256="63c73451734e2bab19d1915796c6776565ea6aea5da4063a9797ecec60da2e3d") + version("5.4.0", sha256="d9d62d539410d66550d0b795503a556830831f50087723cb191a030525eda770") + version("5.3.0", sha256="d8ef4bee4394d2f07299d4688b83bbd98e9d3a2ebbe1c1632144b6f7095ce165") + version("5.2.0", sha256="68c431aef3d9a0b02e97803eb61671c5ecb9d36fd292a807db87067dadb36e53") + version("5.1.2", sha256="97dc5fdc7f78ff5018e6a1fcc841e17a9af4e5a35cebd62df6922349bf12959e") + version("5.1.0", sha256="0b0e03c63e67b04529bb6248808d2a8c82259d40b30fc5a7599f4b6f7bdd4dc6") + version("5.0.0", sha256="2f8694d9978033659f10ceb8bdb19147d3c519a0251b8de84be6ba8824d30517") + version("4.5.6", sha256="1c7b7a265a1d6c606095eb8aa3cb8e27821f1b7f5bc04f28df6d62906e02f4e4") + version("4.5.5", sha256="80d1d9960a6ec70031fecfe9adfe5b1ccd8001a7420efb50d6fa7326ef14af91") + version("4.5.3", sha256="b6965f9198446a502cde48fb0e02236e75fa5700b94c7306fc36599d57b563f4") + + variant("tbb", default=False, description="Build with Intel TBB") + variant( + "pic", + default=True, + description="Build position independent code (required to link with shared libraries)", + ) + variant("cuda", default=False, description="Build with CUDA") + variant("openmp", default=False, description="Build with OpenMP") + variant( + "graphblas", + default=False, + description="Build with GraphBLAS (takes a long time to compile)", + ) + + depends_on("mpfr@4.0.0:", type=("build", "link"), when="@5.8.0:") + depends_on("gmp", type=("build", "link"), when="@5.8.0:") + depends_on("blas") + depends_on("lapack") + depends_on("m4", type="build", when="@5.0.0:") + depends_on("cmake", when="+graphblas @5.2.0:", type="build") + + depends_on("metis@5.1.0", when="@4.5.1:") # in @4.5.1. TBB support in SPQR seems to be broken as TBB-related linkng # flags does not seem to be used, which leads to linking errors on Linux. - depends_on('tbb', when='@4.5.3:+tbb') + depends_on("tbb", when="@4.5.3:+tbb") - depends_on('cuda', when='+cuda') + depends_on("cuda", when="+cuda") - patch('tbb_453.patch', when='@4.5.3:4.5.5+tbb') + patch("tbb_453.patch", when="@4.5.3:4.5.5+tbb") # This patch removes unsupported flags for pgi compiler - patch('pgi.patch', when='%pgi') - patch('pgi.patch', when='%nvhpc') + patch("pgi.patch", when="%pgi") + patch("pgi.patch", when="%nvhpc") # This patch adds '-lm' when linking libgraphblas and when using clang. # Fixes 'libgraphblas.so.2.0.1: undefined reference to `__fpclassify'' - patch('graphblas_libm_dep.patch', when='+graphblas @5.2.0:5.2%clang') + patch("graphblas_libm_dep.patch", when="+graphblas @5.2.0:5.2%clang") # CUDA-11 dropped sm_30 code generation, remove hardcoded sm_30 from makefile # open issue: https://github.com/DrTimothyAldenDavis/SuiteSparse/issues/56 # Tested only with 5.9.0, previous versions probably work too - patch('fix_cuda11.patch', when='@5.9.0:5.10.0+cuda ^cuda@11:') + patch("fix_cuda11.patch", when="@5.9.0:5.10.0+cuda ^cuda@11:") - conflicts('%gcc@:4.8', when='@5.2.0:', msg='gcc version must be at least 4.9 for suite-sparse@5.2.0:') + conflicts( + "%gcc@:4.8", when="@5.2.0:", msg="gcc version must be at least 4.9 for suite-sparse@5.2.0:" + ) # The @2021.x versions of tbb dropped the task_scheduler_init.h header and # related stuff (which have long been deprecated). This appears to be # rather problematic for suite-sparse (see e.g. # https://github.com/DrTimothyAldenDavis/SuiteSparse/blob/master/SPQR/Source/spqr_parallel.cpp) # Have Spack complain if +tbb and trying to use a 2021.x version of tbb - conflicts('+tbb', when='^intel-oneapi-tbb@2021:', - msg='suite-sparse needs task_scheduler_init.h dropped in ' - 'recent tbb libs') - conflicts('+tbb', when='^intel-tbb@2021:', - msg='suite-sparse needs task_scheduler_init.h dropped in ' - 'recent tbb libs') + conflicts( + "+tbb", + when="^intel-oneapi-tbb@2021:", + msg="suite-sparse needs task_scheduler_init.h dropped in " "recent tbb libs", + ) + conflicts( + "+tbb", + when="^intel-tbb@2021:", + msg="suite-sparse needs task_scheduler_init.h dropped in " "recent tbb libs", + ) def symbol_suffix_blas(self, spec, args): """When using BLAS with a special symbol suffix we use defines to @@ -88,23 +103,44 @@ class SuiteSparse(Package): symbol_suffix=64_.""" # Currently only OpenBLAS does this. - if not spec.satisfies('^openblas'): + if not spec.satisfies("^openblas"): return - suffix = spec['openblas'].variants['symbol_suffix'].value - if suffix == 'none': + suffix = spec["openblas"].variants["symbol_suffix"].value + if suffix == "none": return symbols = ( - 'dtrsv_', 'dgemv_', 'dtrsm_', 'dgemm_', 'dsyrk_', 'dger_', 'dscal_', - 'dpotrf_', 'ztrsv_', 'zgemv_', 'ztrsm_', 'zgemm_', 'zherk_', - 'zgeru_', 'zscal_', 'zpotrf_', - 'dnrm2_', 'dlarf_', 'dlarfg_', 'dlarft_', 'dlarfb_', 'dznrm2_', - 'zlarf_', 'zlarfg_', 'zlarft_', 'zlarfb_' + "dtrsv_", + "dgemv_", + "dtrsm_", + "dgemm_", + "dsyrk_", + "dger_", + "dscal_", + "dpotrf_", + "ztrsv_", + "zgemv_", + "ztrsm_", + "zgemm_", + "zherk_", + "zgeru_", + "zscal_", + "zpotrf_", + "dnrm2_", + "dlarf_", + "dlarfg_", + "dlarft_", + "dlarfb_", + "dznrm2_", + "zlarf_", + "zlarfg_", + "zlarft_", + "zlarfb_", ) for symbol in symbols: - args.append('CFLAGS+=-D{0}={1}{2}'.format(symbol, symbol, suffix)) + args.append("CFLAGS+=-D{0}={1}{2}".format(symbol, symbol, suffix)) def install(self, spec, prefix): # The build system of SuiteSparse is quite old-fashioned. @@ -113,38 +149,36 @@ class SuiteSparse(Package): # logic in it. Any kind of customization will need to go through # filtering of that file - cc_pic_flag = self.compiler.cc_pic_flag if '+pic' in spec else '' - f77_pic_flag = self.compiler.f77_pic_flag if '+pic' in spec else '' + cc_pic_flag = self.compiler.cc_pic_flag if "+pic" in spec else "" + f77_pic_flag = self.compiler.f77_pic_flag if "+pic" in spec else "" make_args = [ # By default, the Makefile uses the Intel compilers if # they are found. The AUTOCC flag disables this behavior, # forcing it to use Spack's compiler wrappers. - 'AUTOCC=no', + "AUTOCC=no", # CUDA=no does NOT disable cuda, it only disables internal search # for CUDA_PATH. If in addition the latter is empty, then CUDA is # completely disabled. See # [SuiteSparse/SuiteSparse_config/SuiteSparse_config.mk] for more. - 'CUDA=no', - 'CUDA_PATH=%s' % (spec['cuda'].prefix if '+cuda' in spec else ''), - 'CFOPENMP=%s' % (self.compiler.openmp_flag - if '+openmp' in spec else ''), - 'CFLAGS=-O3 %s' % cc_pic_flag, + "CUDA=no", + "CUDA_PATH=%s" % (spec["cuda"].prefix if "+cuda" in spec else ""), + "CFOPENMP=%s" % (self.compiler.openmp_flag if "+openmp" in spec else ""), + "CFLAGS=-O3 %s" % cc_pic_flag, # Both FFLAGS and F77FLAGS are used in SuiteSparse makefiles; # FFLAGS is used in CHOLMOD, F77FLAGS is used in AMD and UMFPACK. - 'FFLAGS=%s' % f77_pic_flag, - 'F77FLAGS=%s' % f77_pic_flag, + "FFLAGS=%s" % f77_pic_flag, + "F77FLAGS=%s" % f77_pic_flag, # use Spack's metis in CHOLMOD/Partition module, # otherwise internal Metis will be compiled - 'MY_METIS_LIB=%s' % spec['metis'].libs.ld_flags, - 'MY_METIS_INC=%s' % spec['metis'].prefix.include, + "MY_METIS_LIB=%s" % spec["metis"].libs.ld_flags, + "MY_METIS_INC=%s" % spec["metis"].prefix.include, # Make sure Spack's Blas/Lapack is used. Otherwise System's # Blas/Lapack might be picked up. Need to add -lstdc++, following # with the TCOV path of SparseSuite 4.5.1's Suitesparse_config.mk, # even though this fix is ugly - 'BLAS=%s' % (spec['blas'].libs.ld_flags + ( - ' -lstdc++' if '@4.5.1' in spec else '')), - 'LAPACK=%s' % spec['lapack'].libs.ld_flags, + "BLAS=%s" % (spec["blas"].libs.ld_flags + (" -lstdc++" if "@4.5.1" in spec else "")), + "LAPACK=%s" % spec["lapack"].libs.ld_flags, ] # Recent versions require c11 but some demos do not get the c11 from @@ -152,13 +186,15 @@ class SuiteSparse(Package): # GraphBLAS/Demo/Program/wildtype_demo.c. For many compilers this is # not an issue because c11 or newer is their default. However, for some # compilers (e.g. xlc) the c11 flag is necessary. - if spec.satisfies('@5.4:5.7.1') and ('%xl' in spec or '%xl_r' in spec): - make_args += ['CFLAGS+=%s' % self.compiler.c11_flag] + if spec.satisfies("@5.4:5.7.1") and ("%xl" in spec or "%xl_r" in spec): + make_args += ["CFLAGS+=%s" % self.compiler.c11_flag] # 64bit blas in UMFPACK: - if (spec.satisfies('^openblas+ilp64') or - spec.satisfies('^intel-mkl+ilp64') or - spec.satisfies('^intel-parallel-studio+mkl+ilp64')): + if ( + spec.satisfies("^openblas+ilp64") + or spec.satisfies("^intel-mkl+ilp64") + or spec.satisfies("^intel-parallel-studio+mkl+ilp64") + ): make_args.append('UMFPACK_CONFIG=-DLONGBLAS="long long"') # Handle symbol suffix of some BLAS'es (e.g. 64_ or _64 for ilp64) @@ -167,72 +203,67 @@ class SuiteSparse(Package): # SuiteSparse defaults to using '-fno-common -fexceptions' in # CFLAGS, but not all compilers use the same flags for these # optimizations - if any([x in spec for x in - ('%apple-clang', '%clang', '%gcc', '%intel', '%fj')]): - make_args += ['CFLAGS+=-fno-common -fexceptions'] - elif '%pgi' in spec: - make_args += ['CFLAGS+=--exceptions'] + if any([x in spec for x in ("%apple-clang", "%clang", "%gcc", "%intel", "%fj")]): + make_args += ["CFLAGS+=-fno-common -fexceptions"] + elif "%pgi" in spec: + make_args += ["CFLAGS+=--exceptions"] - if spack_f77.endswith('xlf') or spack_f77.endswith('xlf_r'): - make_args += ['CFLAGS+=-DBLAS_NO_UNDERSCORE'] + if spack_f77.endswith("xlf") or spack_f77.endswith("xlf_r"): + make_args += ["CFLAGS+=-DBLAS_NO_UNDERSCORE"] # Intel TBB in SuiteSparseQR - if '+tbb' in spec: + if "+tbb" in spec: make_args += [ - 'SPQR_CONFIG=-DHAVE_TBB', - 'TBB=%s' % spec['tbb'].libs.ld_flags, + "SPQR_CONFIG=-DHAVE_TBB", + "TBB=%s" % spec["tbb"].libs.ld_flags, ] - if '@5.3:' in spec: + if "@5.3:" in spec: # Without CMAKE_LIBRARY_PATH defined, the CMake file in the # Mongoose directory finds libsuitesparseconfig.so in system # directories like /usr/lib. make_args += [ - 'CMAKE_OPTIONS=-DCMAKE_INSTALL_PREFIX=%s' % prefix + - ' -DCMAKE_LIBRARY_PATH=%s' % prefix.lib] + "CMAKE_OPTIONS=-DCMAKE_INSTALL_PREFIX=%s" % prefix + + " -DCMAKE_LIBRARY_PATH=%s" % prefix.lib + ] - make_args.append('INSTALL=%s' % prefix) + make_args.append("INSTALL=%s" % prefix) # Filter the targets we're interested in targets = [ - 'SuiteSparse_config', - 'AMD', - 'BTF', - 'CAMD', - 'CCOLAMD', - 'COLAMD', - 'CHOLMOD', - 'CXSparse', - 'LDL', - 'KLU', - 'UMFPACK', - 'RBio', - 'SPQR' + "SuiteSparse_config", + "AMD", + "BTF", + "CAMD", + "CCOLAMD", + "COLAMD", + "CHOLMOD", + "CXSparse", + "LDL", + "KLU", + "UMFPACK", + "RBio", + "SPQR", ] - if spec.satisfies('+cuda'): - targets.extend([ - 'SuiteSparse_GPURuntime', - 'GPUQREngine' - ]) - targets.extend([ - 'SPQR' - ]) - if spec.satisfies('+graphblas'): - targets.append('GraphBLAS') - if spec.satisfies('@5.8.0:'): - targets.append('SLIP_LU') + if spec.satisfies("+cuda"): + targets.extend(["SuiteSparse_GPURuntime", "GPUQREngine"]) + targets.extend(["SPQR"]) + if spec.satisfies("+graphblas"): + targets.append("GraphBLAS") + if spec.satisfies("@5.8.0:"): + targets.append("SLIP_LU") # Finally make and install - make('-C', 'SuiteSparse_config', 'library', 'config') + make("-C", "SuiteSparse_config", "library", "config") for target in targets: - make('-C', target, 'library', *make_args) - make('-C', target, 'install', *make_args) + make("-C", target, "library", *make_args) + make("-C", target, "install", *make_args) - @run_after('install') + @run_after("install") def fix_darwin_install(self): # The shared libraries are not installed correctly on Darwin: # See https://github.com/DrTimothyAldenDavis/SuiteSparse/issues/42 - if '+pic platform=darwin' in self.spec: + if "+pic platform=darwin" in self.spec: fix_darwin_install_name(self.spec.prefix.lib) @property @@ -242,10 +273,23 @@ class SuiteSparse(Package): spec['suite-sparse:klu,btf'].libs.ld_flags """ # Component libraries, ordered by dependency. Any missing components? - all_comps = ['klu', 'btf', 'umfpack', 'cholmod', 'colamd', 'amd', - 'camd', 'ccolamd', 'cxsparse', 'ldl', 'rbio', 'spqr', - 'suitesparseconfig'] + all_comps = [ + "klu", + "btf", + "umfpack", + "cholmod", + "colamd", + "amd", + "camd", + "ccolamd", + "cxsparse", + "ldl", + "rbio", + "spqr", + "suitesparseconfig", + ] query_parameters = self.spec.last_query.extra_parameters comps = all_comps if not query_parameters else query_parameters - return find_libraries(['lib' + c for c in comps], root=self.prefix.lib, - shared=True, recursive=False) + return find_libraries( + ["lib" + c for c in comps], root=self.prefix.lib, shared=True, recursive=False + ) |