diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/transdecoder/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/transdecoder/package.py | 33 |
1 files changed, 18 insertions, 15 deletions
diff --git a/var/spack/repos/builtin/packages/transdecoder/package.py b/var/spack/repos/builtin/packages/transdecoder/package.py index 3afb995cdd..0bc2d7b2dc 100644 --- a/var/spack/repos/builtin/packages/transdecoder/package.py +++ b/var/spack/repos/builtin/packages/transdecoder/package.py @@ -8,27 +8,30 @@ from spack.package import * class Transdecoder(MakefilePackage): """TransDecoder identifies candidate coding regions within transcript - sequences, such as those generated by de novo RNA-Seq transcript - assembly using Trinity, or constructed based on RNA-Seq alignments to - the genome using Tophat and Cufflinks.""" + sequences, such as those generated by de novo RNA-Seq transcript + assembly using Trinity, or constructed based on RNA-Seq alignments to + the genome using Tophat and Cufflinks.""" homepage = "https://transdecoder.github.io/" - url = "https://github.com/TransDecoder/TransDecoder/archive/TransDecoder-v5.5.0.tar.gz" + url = "https://github.com/TransDecoder/TransDecoder/archive/TransDecoder-v5.5.0.tar.gz" - version('5.5.0', sha256='c800d9226350817471e9f51267c91f7cab99dbc9b26c980527fc1019e7d90a76') - version('3.0.1', sha256='753a5fac5bfd04466aeabff48053c92e876cece8906b96de3b72f23f86fafae7', - url='https://github.com/TransDecoder/TransDecoder/archive/v3.0.1.tar.gz') + version("5.5.0", sha256="c800d9226350817471e9f51267c91f7cab99dbc9b26c980527fc1019e7d90a76") + version( + "3.0.1", + sha256="753a5fac5bfd04466aeabff48053c92e876cece8906b96de3b72f23f86fafae7", + url="https://github.com/TransDecoder/TransDecoder/archive/v3.0.1.tar.gz", + ) - depends_on('perl', type=('build', 'run')) - depends_on('perl-uri', type='run') + depends_on("perl", type=("build", "run")) + depends_on("perl-uri", type="run") def install(self, spec, prefix): mkdirp(prefix.util) - install('TransDecoder.LongOrfs', prefix) - install('TransDecoder.Predict', prefix) - install_tree('PerlLib', prefix.PerlLib) - install_tree('util', prefix.util) + install("TransDecoder.LongOrfs", prefix) + install("TransDecoder.Predict", prefix) + install_tree("PerlLib", prefix.PerlLib) + install_tree("util", prefix.util) def setup_run_environment(self, env): - env.prepend_path('PATH', self.prefix) - env.prepend_path('PATH', self.prefix.util) + env.prepend_path("PATH", self.prefix) + env.prepend_path("PATH", self.prefix.util) |