diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/treesub/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/treesub/package.py | 34 |
1 files changed, 17 insertions, 17 deletions
diff --git a/var/spack/repos/builtin/packages/treesub/package.py b/var/spack/repos/builtin/packages/treesub/package.py index cb7a9ad4f8..ddcfbaef20 100644 --- a/var/spack/repos/builtin/packages/treesub/package.py +++ b/var/spack/repos/builtin/packages/treesub/package.py @@ -10,33 +10,33 @@ from spack.package import * class Treesub(Package): """A small program (which glues together other programs) that - allows a user to input a codon alignment in FASTA format and - produce an annotated phylogenetic tree showing which substitutions - occurred on a given branch. Originally written for colleagues at - the MRC NIMR.""" + allows a user to input a codon alignment in FASTA format and + produce an annotated phylogenetic tree showing which substitutions + occurred on a given branch. Originally written for colleagues at + the MRC NIMR.""" homepage = "https:/github.com/tamuri/treesub" - url = "https://github.com/tamuri/treesub/archive/v0.2.tar.gz" + url = "https://github.com/tamuri/treesub/archive/v0.2.tar.gz" - version('0.2', sha256='58b0d2638cf9ae1ad8705df26a57c32b52a69f50e7954debbd678c82772fdc56') - version('0.1', sha256='c083ecc5f7e9f11645a7e768f6a09fefcbb254b526212003527b4b8dd14723f1') + version("0.2", sha256="58b0d2638cf9ae1ad8705df26a57c32b52a69f50e7954debbd678c82772fdc56") + version("0.1", sha256="c083ecc5f7e9f11645a7e768f6a09fefcbb254b526212003527b4b8dd14723f1") - depends_on('java', type=('build', 'run')) - depends_on('ant', type='build') - depends_on('paml', type='run') - depends_on('raxml', type='run') - depends_on('figtree', type='run') + depends_on("java", type=("build", "run")) + depends_on("ant", type="build") + depends_on("paml", type="run") + depends_on("raxml", type="run") + depends_on("figtree", type="run") def install(self, spec, prefix): - ant = self.spec['ant'].command - ant('jar') + ant = self.spec["ant"].command + ant("jar") mkdirp(prefix.bin) - install_tree('dist', prefix.bin) + install_tree("dist", prefix.bin) mkdirp(prefix.lib) - install_tree('lib', prefix.lib) + install_tree("lib", prefix.lib) - execscript = join_path(self.package_dir, 'treesub') + execscript = join_path(self.package_dir, "treesub") os.chmod(execscript, 0o775) install(execscript, prefix.bin) |