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Diffstat (limited to 'var/spack/repos/builtin/packages/trf/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/trf/package.py | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/trf/package.py b/var/spack/repos/builtin/packages/trf/package.py new file mode 100644 index 0000000000..f02e30302d --- /dev/null +++ b/var/spack/repos/builtin/packages/trf/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * +import os + + +class Trf(Package): + """Tandem Repeats Finder is a program to locate and display tandem repeats + in DNA sequences. + + Note: A manual download is required for TRF. + Spack will search your current directory for the download file. + Alternatively, add this file to a mirror so that Spack can find it. + For instructions on how to set up a mirror, see + http://spack.readthedocs.io/en/latest/mirrors.html""" + + homepage = "https://tandem.bu.edu/trf/trf.html" + + version('4.09', '0c594fe666e0332db1df9d160d7fabc8', expand=False, + url='file://{0}/trf409.linux64'.format(os.getcwd())) + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('trf409.linux64', prefix.bin.trf) |