diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/trimmomatic/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/trimmomatic/package.py | 37 |
1 files changed, 8 insertions, 29 deletions
diff --git a/var/spack/repos/builtin/packages/trimmomatic/package.py b/var/spack/repos/builtin/packages/trimmomatic/package.py index da741d5017..0f04596cf8 100644 --- a/var/spack/repos/builtin/packages/trimmomatic/package.py +++ b/var/spack/repos/builtin/packages/trimmomatic/package.py @@ -1,30 +1,9 @@ -############################################################################## -# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. # -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the NOTICE and LICENSE files for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + from spack import * -from distutils.dir_util import copy_tree -from shutil import copyfile import os.path @@ -47,18 +26,18 @@ class Trimmomatic(Package): install(jar_file, prefix.bin) # Put the adapter files someplace sensible - copy_tree('adapters', join_path(self.prefix.share, 'adapters')) + install_tree('adapters', prefix.share.adapters) # Set up a helper script to call java on the jar file, # explicitly codes the path for java and the jar file. script_sh = join_path(os.path.dirname(__file__), "trimmomatic.sh") - script = join_path(prefix.bin, "trimmomatic") - copyfile(script_sh, script) + script = prefix.bin.trimmomatic + install(script_sh, script) set_executable(script) # Munge the helper script to explicitly point to java and the # jar file. - java = join_path(self.spec['java'].prefix, 'bin', 'java') + java = self.spec['java'].prefix.bin.java kwargs = {'ignore_absent': False, 'backup': False, 'string': False} filter_file('^java', java, script, **kwargs) filter_file('trimmomatic.jar', join_path(prefix.bin, jar_file), |