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Diffstat (limited to 'var/spack/repos/builtin/packages/unblur/package.py')
-rw-r--r-- | var/spack/repos/builtin/packages/unblur/package.py | 53 |
1 files changed, 53 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/unblur/package.py b/var/spack/repos/builtin/packages/unblur/package.py new file mode 100644 index 0000000000..2ca644f658 --- /dev/null +++ b/var/spack/repos/builtin/packages/unblur/package.py @@ -0,0 +1,53 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Unblur(AutotoolsPackage): + """Unblur is used to align the frames of movies recorded on an electron + microscope to reduce image blurring due to beam-induced motion.""" + + homepage = "http://grigoriefflab.janelia.org/unblur" + url = "http://grigoriefflab.janelia.org/sites/default/files/unblur_1.0.2.tar.gz" + + version('1.0.2', 'b6e367061cd0cef1b62a391a6289f681') + + variant('openmp', default=True, description='Enable OpenMP support') + variant('shared', default=True, description='Dynamic linking') + + depends_on('zlib') + depends_on('jpeg') + depends_on('libtiff') + depends_on('gsl') + depends_on('jbigkit') + depends_on('fftw@3:') + # Requires Intel Fortran compiler + conflicts('%gcc') + conflicts('%pgi') + conflicts('%clang') + conflicts('%cce') + conflicts('%xl') + conflicts('%xl_r') + conflicts('%nag') + + configure_directory = 'src' + + def patch(self): + filter_file(r'<<<<<<<.*', '', 'src/missing') + + def configure_args(self): + spec = self.spec + return ['FC=ifort', + 'F77=ifort', + '--enable-static={0}' + .format('yes' if '~shared' in spec else 'no'), + '--enable-openmp={0}' + .format('yes' if '+openmp' in spec else 'no'), + '--enable-optimisations=yes'] + + def build(self, spec, prefix): + with working_dir('src'): + make(parallel=False) |