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Diffstat (limited to 'var/spack/repos/builtin/packages/wgsim/package.py')
-rw-r--r-- | var/spack/repos/builtin/packages/wgsim/package.py | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/wgsim/package.py b/var/spack/repos/builtin/packages/wgsim/package.py new file mode 100644 index 0000000000..7caa098346 --- /dev/null +++ b/var/spack/repos/builtin/packages/wgsim/package.py @@ -0,0 +1,29 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Wgsim(Package): + """Wgsim is a small tool for simulating sequence reads from a reference + genome. + + It is able to simulate diploid genomes with SNPs and insertion/deletion + (INDEL) polymorphisms, and simulate reads with uniform substitution + sequencing errors. It does not generate INDEL sequencing errors, but this + can be partly compensated by simulating INDEL polymorphisms.""" + + homepage = "https://github.com/lh3/wgsim" + git = "https://github.com/lh3/wgsim.git" + + version('2011.10.17', commit='a12da3375ff3b51a5594d4b6fa35591173ecc229') + + depends_on('zlib') + + def install(self, spec, prefix): + cc = Executable(spack_cc) + cc('-g', '-O2', '-Wall', '-o', 'wgsim', 'wgsim.c', '-lz', '-lm') + + install_tree(self.stage.source_path, prefix.bin) |