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+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Wgsim(Package):
+ """Wgsim is a small tool for simulating sequence reads from a reference
+ genome.
+
+ It is able to simulate diploid genomes with SNPs and insertion/deletion
+ (INDEL) polymorphisms, and simulate reads with uniform substitution
+ sequencing errors. It does not generate INDEL sequencing errors, but this
+ can be partly compensated by simulating INDEL polymorphisms."""
+
+ homepage = "https://github.com/lh3/wgsim"
+ git = "https://github.com/lh3/wgsim.git"
+
+ version('2011.10.17', commit='a12da3375ff3b51a5594d4b6fa35591173ecc229')
+
+ depends_on('zlib')
+
+ def install(self, spec, prefix):
+ cc = Executable(spack_cc)
+ cc('-g', '-O2', '-Wall', '-o', 'wgsim', 'wgsim.c', '-lz', '-lm')
+
+ install_tree(self.stage.source_path, prefix.bin)