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Diffstat (limited to 'var/spack/repos/builtin/packages/xios/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/xios/package.py | 204 |
1 files changed, 204 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/xios/package.py b/var/spack/repos/builtin/packages/xios/package.py new file mode 100644 index 0000000000..90ea16b10e --- /dev/null +++ b/var/spack/repos/builtin/packages/xios/package.py @@ -0,0 +1,204 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +# +from spack import * +import os + + +class Xios(Package): + """XML-IO-SERVER library for IO management of climate models.""" + + homepage = "https://forge.ipsl.jussieu.fr/ioserver/wiki" + + version('1.0', revision=910, + svn='http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-1.0') + version('develop', svn='http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/trunk') + + variant('mode', values=('debug', 'dev', 'prod'), default='dev', + description='Build for debugging, development or production') + # NOTE: oasis coupler could be supported with a variant + + # Use spack versions of blitz and netcdf for compatibility + # with recent compilers and optimised platform libraries: + patch('bld_extern_1.0.patch', when='@:1.0') + patch('bld_extern_1.x.patch', when='@1.1:') + + # Workaround bug #17782 in llvm, where reading a double + # followed by a character is broken (e.g. duration '1d'): + patch('llvm_bug_17782.patch', when='@1.1: %clang') + + depends_on('netcdf+mpi') + depends_on('netcdf-fortran') + depends_on('hdf5+mpi') + depends_on('mpi') + depends_on('boost') + depends_on('blitz') + depends_on('perl', type='build') + depends_on('perl-uri-escape', type='build') + depends_on('gmake', type='build') + + @when('%clang') + def patch(self): + """Fix type references that are ambiguous for clang.""" + for dirpath, dirnames, filenames in os.walk('src'): + for filename in filenames: + filepath = os.path.join(dirpath, filename) + # Use boost definition of type shared_ptr: + filter_file(r'([^:/])shared_ptr<', + r'\1boost::shared_ptr<', filepath) + # Use type long for position in output stream: + filter_file(r'oss.tellp\(\) *- *startPos', + r'(long)oss.tellp() - startPos', filepath) + + def xios_env(self): + file = join_path('arch', 'arch-SPACK.env') + touch(file) + + def xios_path(self): + file = join_path('arch', 'arch-SPACK.path') + spec = self.spec + paths = {'NETCDF_INC_DIR': spec['netcdf'].prefix.include, + 'NETCDF_LIB_DIR': spec['netcdf'].prefix.lib, + 'HDF5_INC_DIR': spec['hdf5'].prefix.include, + 'HDF5_LIB_DIR': spec['hdf5'].prefix.lib} + text = r""" +NETCDF_INCDIR="-I {NETCDF_INC_DIR}" +NETCDF_LIBDIR="-L {NETCDF_LIB_DIR}" +NETCDF_LIB="-lnetcdff -lnetcdf" + +MPI_INCDIR="" +MPI_LIBDIR="" +MPI_LIB="" + +HDF5_INCDIR="-I {HDF5_INC_DIR}" +HDF5_LIBDIR="-L {HDF5_LIB_DIR}" +HDF5_LIB="-lhdf5_hl -lhdf5" + +OASIS_INCDIR="" +OASIS_LIBDIR="" +OASIS_LIB="" +""" + with open(file, 'w') as f: + f.write(text.format(**paths)) + + def xios_fcm(self): + file = join_path('arch', 'arch-SPACK.fcm') + spec = self.spec + param = dict() + param['MPICXX'] = spec['mpi'].mpicxx + param['MPIFC'] = spec['mpi'].mpifc + param['CC'] = self.compiler.cc + param['FC'] = self.compiler.fc + param['BOOST_INC_DIR'] = spec['boost'].prefix.include + param['BOOST_LIB_DIR'] = spec['boost'].prefix.lib + param['BLITZ_INC_DIR'] = spec['blitz'].prefix.include + param['BLITZ_LIB_DIR'] = spec['blitz'].prefix.lib + if spec.satisfies('%clang platform=darwin'): + param['LIBCXX'] = '-lc++' + else: + param['LIBCXX'] = '-lstdc++' + + if any(map(spec.satisfies, ('%gcc', '%intel', '%clang'))): + text = r""" +%CCOMPILER {MPICXX} +%FCOMPILER {MPIFC} +%LINKER {MPIFC} + +%BASE_CFLAGS -ansi -w -D_GLIBCXX_USE_CXX11_ABI=0 \ + -I{BOOST_INC_DIR} -I{BLITZ_INC_DIR} +%PROD_CFLAGS -O3 -DBOOST_DISABLE_ASSERTS +%DEV_CFLAGS -g -O2 +%DEBUG_CFLAGS -g + +%BASE_FFLAGS -D__NONE__ +%PROD_FFLAGS -O3 +%DEV_FFLAGS -g -O2 +%DEBUG_FFLAGS -g + +%BASE_INC -D__NONE__ +%BASE_LD -L{BOOST_LIB_DIR} -L{BLITZ_LIB_DIR} -lblitz {LIBCXX} + +%CPP {CC} -E +%FPP {CC} -E -P -x c +%MAKE gmake +""".format(**param) + elif spec.satisfies('%cce'): + # In the CC compiler prior to cce/8.3.7, + # optimisation must be reduced to avoid a bug, + # as reported by Mike Rezny at the UK Met Office: + if spec.satisfies('%cce@8.3.7:'): + param.update({'CC_OPT_DEV': '-O2', 'CC_OPT_PROD': '-O3'}) + else: + param.update({'CC_OPT_DEV': '-O1', 'CC_OPT_PROD': '-O1'}) + + text = r""" +%CCOMPILER {MPICXX} +%FCOMPILER {MPIFC} +%LINKER {MPIFC} + +%BASE_CFLAGS -DMPICH_SKIP_MPICXX -h msglevel_4 -h zero -h gnu \ + -I{BOOST_INC_DIR} -I{BLITZ_INC_DIR} +%PROD_CFLAGS {CC_OPT_PROD} -DBOOST_DISABLE_ASSERTS +%DEV_CFLAGS {CC_OPT_DEV} +%DEBUG_CFLAGS -g + +%BASE_FFLAGS -em -m 4 -e0 -eZ +%PROD_FFLAGS -O3 +%DEV_FFLAGS -G2 +%DEBUG_FFLAGS -g + +%BASE_INC -D__NONE__ +%BASE_LD -D__NONE__ -L{BOOST_LIB_DIR} -L{BLITZ_LIB_DIR} -lblitz + +%CPP cpp +%FPP cpp -P -CC +%MAKE gmake +""".format(**param) + else: + raise InstallError('Unsupported compiler.') + + with open(file, 'w') as f: + f.write(text) + + def install(self, spec, prefix): + env['CC'] = spec['mpi'].mpicc + env['CXX'] = spec['mpi'].mpicxx + env['F77'] = spec['mpi'].mpif77 + env['FC'] = spec['mpi'].mpifc + + options = ['--full', + '--%s' % spec.variants['mode'].value, + '--arch', 'SPACK', + '--netcdf_lib', 'netcdf4_par', + '--job', str(make_jobs)] + + self.xios_env() + self.xios_path() + self.xios_fcm() + + make_xios = Executable('./make_xios') + make_xios(*options) + + mkdirp(spec.prefix) + install_tree('bin', spec.prefix.bin) + install_tree('lib', spec.prefix.lib) + install_tree('inc', spec.prefix.include) + install_tree('etc', spec.prefix.etc) + install_tree('cfg', spec.prefix.cfg) + + @run_after('install') + @on_package_attributes(run_tests=True) + def check_build(self): + mpirun = os.getenv('MPIRUN') + if mpirun is None: + mpirun = 'mpiexec' + mpiexec = Executable(mpirun) + with working_dir('inputs'): + try: + mpiexec('-n', '2', join_path('..', 'bin', 'test_client.exe')) + except Exception: + raise InstallError( + 'Test failed; defining MPIRUN variable may help.') |