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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-pegas/package.py | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-pegas/package.py b/var/spack/repos/builtin/packages/r-pegas/package.py new file mode 100644 index 0000000000..5c60591cf7 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-pegas/package.py @@ -0,0 +1,30 @@ +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RPegas(RPackage): + """Population and Evolutionary Genetics Analysis System + + Functions for reading, writing, plotting, analysing, and + manipulating allelic and haplotypic data, including from VCF files, + and for the analysis of population nucleotide sequences and + micro-satellites including coalescent analyses, linkage + disequilibrium, population structure (Fst, Amova) and equilibrium + (HWE), haplotype networks, minimum spanning tree and network, and + median-joining networks.""" + + homepage = "http://ape-package.ird.fr/pegas.html" + url = "https://cloud.r-project.org/src/contrib/pegas_0.14.tar.gz" + list_url = "https://cloud.r-project.org/src/contrib/Archive/pegas" + + maintainers = ['dorton21'] + + version('0.14', sha256='7df90e6c4a69e8dbed2b3f68b18f1975182475bf6f86d4159256b52fd5332053') + + depends_on('r@3.2.0:', type=('build', 'run')) + depends_on('r-ape@5.3-11:', type=('build', 'run')) + depends_on('r-adegenet', type=('build', 'run')) |