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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-affyilm/package.py | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-affyilm/package.py b/var/spack/repos/builtin/packages/r-affyilm/package.py new file mode 100644 index 0000000000..15a87d046e --- /dev/null +++ b/var/spack/repos/builtin/packages/r-affyilm/package.py @@ -0,0 +1,44 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RAffyilm(RPackage): + """affyILM is a preprocessing tool which estimates gene + expression levels for Affymetrix Gene Chips. Input from + physical chemistry is employed to first background subtract + intensities before calculating concentrations on behalf + of the Langmuir model.""" + + homepage = "https://www.bioconductor.org/packages/affyILM/" + url = "https://git.bioconductor.org/packages/affyILM" + + version('1.28.0', git='https://git.bioconductor.org/packages/affyILM', commit='307bee3ebc599e0ea4a1d6fa8d5511ccf8bef7de') + + depends_on('r@3.4.0:3.4.9', when='@1.28.0') + depends_on('r-gcrma', type=('build', 'run')) + depends_on('r-affxparser', type=('build', 'run')) + depends_on('r-affy', type=('build', 'run')) + depends_on('r-biobase', type=('build', 'run')) |