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-rw-r--r--var/spack/repos/builtin/packages/metis/package.py190
-rw-r--r--var/spack/repos/builtin/packages/parmetis/package.py44
2 files changed, 127 insertions, 107 deletions
diff --git a/var/spack/repos/builtin/packages/metis/package.py b/var/spack/repos/builtin/packages/metis/package.py
index 061179b78e..c4f2afaff2 100644
--- a/var/spack/repos/builtin/packages/metis/package.py
+++ b/var/spack/repos/builtin/packages/metis/package.py
@@ -24,55 +24,61 @@
##############################################################################
from spack import *
-import glob, sys, os
+import glob
+import sys
+import os
+
class Metis(Package):
- """
- METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill
- reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel
- recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
- """
+ """METIS is a set of serial programs for partitioning graphs, partitioning
+ finite element meshes, and producing fill reducing orderings for sparse
+ matrices. The algorithms implemented in METIS are based on the
+ multilevel recursive-bisection, multilevel k-way, and multi-constraint
+ partitioning schemes."""
- homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/metis/overview'
- url = "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz"
+ homepage = "http://glaros.dtc.umn.edu/gkhome/metis/metis/overview"
+ base_url = "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis"
- version('5.1.0', '5465e67079419a69e0116de24fce58fe',
- url='http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz')
- version('4.0.3', '5efa35de80703c1b2c4d0de080fafbcf4e0d363a21149a1ad2f96e0144841a55',
- url='http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/metis-4.0.3.tar.gz')
+ version('5.1.0', '5465e67079419a69e0116de24fce58fe')
+ version('5.0.2', 'acb521a4e8c2e6dd559a7f9abd0468c5')
+ version('4.0.3', 'd3848b454532ef18dc83e4fb160d1e10')
variant('shared', default=True, description='Enables the build of shared libraries')
variant('debug', default=False, description='Builds the library in debug mode')
variant('gdb', default=False, description='Enables gdb support')
variant('idx64', default=False, description='Use int64_t as default index type')
- variant('double', default=False, description='Use double precision floating point types')
+ variant('real64', default=False, description='Use double precision floating point types')
- depends_on('cmake @2.8:', when='@5:') # build-time dependency
- depends_on('gdb', when='+gdb')
+ depends_on('cmake@2.8:', when='@5:') # build-time dependency
patch('install_gklib_defs_rename.patch', when='@5:')
+ def url_for_version(self, version):
+ verdir = 'OLD/' if version < Version('4.0.3') else ''
+ return '%s/%smetis-%s.tar.gz' % (Metis.base_url, verdir, version)
- @when('@4:4.0.3')
+ @when('@:4')
def install(self, spec, prefix):
-
- if '+gdb' in spec:
- raise InstallError('gdb support not implemented in METIS 4!')
- if '+idx64' in spec:
- raise InstallError('idx64 option not implemented in METIS 4!')
- if '+double' in spec:
- raise InstallError('double option not implemented for METIS 4!')
+ # Process library spec and options
+ unsupp_vars = [v for v in ('+gdb', '+idx64', '+real64') if v in spec]
+ if unsupp_vars:
+ msg = 'Given variants %s are unsupported by METIS 4!' % unsupp_vars
+ raise InstallError(msg)
options = ['COPTIONS=-fPIC']
if '+debug' in spec:
options.append('OPTFLAGS=-g -O0')
make(*options)
+ # Compile and install library files
+ ccompile = Executable(self.compiler.cc)
+
mkdir(prefix.bin)
- for x in ('pmetis', 'kmetis', 'oemetis', 'onmetis', 'partnmesh',
- 'partdmesh', 'mesh2nodal', 'mesh2dual', 'graphchk'):
- install(x, prefix.bin)
+ binfiles = ('pmetis', 'kmetis', 'oemetis', 'onmetis', 'partnmesh',
+ 'partdmesh', 'mesh2nodal', 'mesh2dual', 'graphchk')
+ for binfile in binfiles:
+ install(binfile, prefix.bin)
mkdir(prefix.lib)
install('libmetis.a', prefix.lib)
@@ -82,106 +88,120 @@ class Metis(Package):
install(h, prefix.include)
mkdir(prefix.share)
- for f in (join_path(*p)
- for p in (('Programs', 'io.c'),
- ('Test','mtest.c'),
- ('Graphs','4elt.graph'),
- ('Graphs', 'metis.mesh'),
- ('Graphs', 'test.mgraph'))):
- install(f, prefix.share)
+ sharefiles = (('Graphs', '4elt.graph'), ('Graphs', 'metis.mesh'),
+ ('Graphs', 'test.mgraph'))
+ for sharefile in tuple(join_path(*sf) for sf in sharefiles):
+ install(sharefile, prefix.share)
if '+shared' in spec:
+ shared_flags = ['-fPIC', '-shared']
if sys.platform == 'darwin':
- lib_dsuffix = 'dylib'
- load_flag = '-Wl,-all_load'
- no_load_flag = ''
+ shared_suffix = 'dylib'
+ shared_flags.extend(['-Wl,-all_load', 'libmetis.a'])
else:
- lib_dsuffix = 'so'
- load_flag = '-Wl,-whole-archive'
- no_load_flag = '-Wl,-no-whole-archive'
+ shared_suffix = 'so'
+ shared_flags.extend(['-Wl,-whole-archive', 'libmetis.a',
+ '-Wl,-no-whole-archive'])
- os.system(spack_cc + ' -fPIC -shared ' + load_flag +
- ' libmetis.a ' + no_load_flag + ' -o libmetis.' +
- lib_dsuffix)
- install('libmetis.' + lib_dsuffix, prefix.lib)
+ shared_out = '%s/libmetis.%s' % (prefix.lib, shared_suffix)
+ shared_flags.extend(['-o', shared_out])
- # Set up and run tests on installation
- symlink(join_path(prefix.share, 'io.c'), 'io.c')
- symlink(join_path(prefix.share, 'mtest.c'), 'mtest.c')
- os.system(spack_cc + ' -I%s' % prefix.include + ' -c io.c')
- os.system(spack_cc + ' -I%s' % prefix.include +
- ' -L%s' % prefix.lib + ' -lmetis mtest.c io.o -o mtest')
- _4eltgraph = join_path(prefix.share, '4elt.graph')
- test_mgraph = join_path(prefix.share, 'test.mgraph')
- metis_mesh = join_path(prefix.share, 'metis.mesh')
- kmetis = join_path(prefix.bin, 'kmetis')
- os.system('./mtest ' + _4eltgraph)
- os.system(kmetis + ' ' + _4eltgraph + ' 40')
- os.system(join_path(prefix.bin, 'onmetis') + ' ' + _4eltgraph)
- os.system(join_path(prefix.bin, 'pmetis') + ' ' + test_mgraph + ' 2')
- os.system(kmetis + ' ' + test_mgraph + ' 2')
- os.system(kmetis + ' ' + test_mgraph + ' 5')
- os.system(join_path(prefix.bin, 'partnmesh') + metis_mesh + ' 10')
- os.system(join_path(prefix.bin, 'partdmesh') + metis_mesh + ' 10')
- os.system(join_path(prefix.bin, 'mesh2dual') + metis_mesh)
+ ccompile(*shared_flags)
+ # Set up and run tests on installation
+ ccompile('-I%s' % prefix.include, '-L%s' % prefix.lib,
+ '-Wl,-rpath=%s' % (prefix.lib if '+shared' in spec else ''),
+ join_path('Programs', 'io.o'), join_path('Test', 'mtest.c'),
+ '-o', '%s/mtest' % prefix.bin, '-lmetis', '-lm')
+
+ test_bin = lambda testname: join_path(prefix.bin, testname)
+ test_graph = lambda graphname: join_path(prefix.share, graphname)
+
+ graph = test_graph('4elt.graph')
+ os.system('%s %s' % (test_bin('mtest'), graph))
+ os.system('%s %s 40' % (test_bin('kmetis'), graph))
+ os.system('%s %s' % (test_bin('onmetis'), graph))
+ graph = test_graph('test.mgraph')
+ os.system('%s %s 2' % (test_bin('pmetis'), graph))
+ os.system('%s %s 2' % (test_bin('kmetis'), graph))
+ os.system('%s %s 5' % (test_bin('kmetis'), graph))
+ graph = test_graph('metis.mesh')
+ os.system('%s %s 10' % (test_bin('partnmesh'), graph))
+ os.system('%s %s 10' % (test_bin('partdmesh'), graph))
+ os.system('%s %s' % (test_bin('mesh2dual'), graph))
+
+ # FIXME: The following code should replace the testing code in the
+ # block above since it causes installs to fail when one or more of the
+ # Metis tests fail, but it currently doesn't work because the 'mtest',
+ # 'onmetis', and 'partnmesh' tests return error codes that trigger
+ # false positives for failure.
+ """
+ Executable(test_bin('mtest'))(test_graph('4elt.graph'))
+ Executable(test_bin('kmetis'))(test_graph('4elt.graph'), '40')
+ Executable(test_bin('onmetis'))(test_graph('4elt.graph'))
+
+ Executable(test_bin('pmetis'))(test_graph('test.mgraph'), '2')
+ Executable(test_bin('kmetis'))(test_graph('test.mgraph'), '2')
+ Executable(test_bin('kmetis'))(test_graph('test.mgraph'), '5')
+
+ Executable(test_bin('partnmesh'))(test_graph('metis.mesh'), '10')
+ Executable(test_bin('partdmesh'))(test_graph('metis.mesh'), '10')
+ Executable(test_bin('mesh2dual'))(test_graph('metis.mesh'))
+ """
@when('@5:')
def install(self, spec, prefix):
-
options = []
options.extend(std_cmake_args)
build_directory = join_path(self.stage.path, 'spack-build')
source_directory = self.stage.source_path
- options.append('-DGKLIB_PATH:PATH={metis_source}/GKlib'.format(metis_source=source_directory))
+ options.append('-DGKLIB_PATH:PATH=%s/GKlib' % source_directory)
options.append('-DCMAKE_INSTALL_NAME_DIR:PATH=%s/lib' % prefix)
if '+shared' in spec:
options.append('-DSHARED:BOOL=ON')
-
if '+debug' in spec:
options.extend(['-DDEBUG:BOOL=ON',
'-DCMAKE_BUILD_TYPE:STRING=Debug'])
-
if '+gdb' in spec:
options.append('-DGDB:BOOL=ON')
metis_header = join_path(source_directory, 'include', 'metis.h')
-
if '+idx64' in spec:
filter_file('IDXTYPEWIDTH 32', 'IDXTYPEWIDTH 64', metis_header)
-
- if '+double' in spec:
+ if '+real64' in spec:
filter_file('REALTYPEWIDTH 32', 'REALTYPEWIDTH 64', metis_header)
# Make clang 7.3 happy.
# Prevents "ld: section __DATA/__thread_bss extends beyond end of file"
# See upstream LLVM issue https://llvm.org/bugs/show_bug.cgi?id=27059
- # Adopted from https://github.com/Homebrew/homebrew-science/blob/master/metis.rb
+ # and https://github.com/Homebrew/homebrew-science/blob/master/metis.rb
if spec.satisfies('%clang@7.3.0'):
- filter_file('#define MAX_JBUFS 128', '#define MAX_JBUFS 24', join_path(source_directory, 'GKlib', 'error.c'))
+ filter_file('#define MAX_JBUFS 128', '#define MAX_JBUFS 24',
+ join_path(source_directory, 'GKlib', 'error.c'))
with working_dir(build_directory, create=True):
cmake(source_directory, *options)
make()
- make("install")
+ make('install')
+
# now run some tests:
- for f in ["4elt", "copter2", "mdual"]:
- graph = join_path(source_directory,'graphs','%s.graph' % f)
- Executable(join_path(prefix.bin,'graphchk'))(graph)
- Executable(join_path(prefix.bin,'gpmetis'))(graph,'2')
- Executable(join_path(prefix.bin,'ndmetis'))(graph)
+ for f in ['4elt', 'copter2', 'mdual']:
+ graph = join_path(source_directory, 'graphs', '%s.graph' % f)
+ Executable(join_path(prefix.bin, 'graphchk'))(graph)
+ Executable(join_path(prefix.bin, 'gpmetis'))(graph, '2')
+ Executable(join_path(prefix.bin, 'ndmetis'))(graph)
- graph = join_path(source_directory,'graphs','test.mgraph')
- Executable(join_path(prefix.bin,'gpmetis'))(graph,'2')
- graph = join_path(source_directory,'graphs','metis.mesh')
- Executable(join_path(prefix.bin,'mpmetis'))(graph,'2')
+ graph = join_path(source_directory, 'graphs', 'test.mgraph')
+ Executable(join_path(prefix.bin, 'gpmetis'))(graph, '2')
+ graph = join_path(source_directory, 'graphs', 'metis.mesh')
+ Executable(join_path(prefix.bin, 'mpmetis'))(graph, '2')
# install GKlib headers, which will be needed for ParMETIS
- GKlib_dist = join_path(prefix.include,'GKlib')
+ GKlib_dist = join_path(prefix.include, 'GKlib')
mkdirp(GKlib_dist)
- fs = glob.glob(join_path(source_directory,'GKlib',"*.h"))
- for f in fs:
- install(f, GKlib_dist)
+ hfiles = glob.glob(join_path(source_directory, 'GKlib', '*.h'))
+ for hfile in hfiles:
+ install(hfile, GKlib_dist)
diff --git a/var/spack/repos/builtin/packages/parmetis/package.py b/var/spack/repos/builtin/packages/parmetis/package.py
index 2dead4a76a..9b36f273e4 100644
--- a/var/spack/repos/builtin/packages/parmetis/package.py
+++ b/var/spack/repos/builtin/packages/parmetis/package.py
@@ -26,33 +26,36 @@
from spack import *
import sys
+
class Parmetis(Package):
- """
- ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured
- graphs, meshes, and for computing fill-reducing orderings of sparse matrices.
- """
+ """ParMETIS is an MPI-based parallel library that implements a variety of
+ algorithms for partitioning unstructured graphs, meshes, and for
+ computing fill-reducing orderings of sparse matrices."""
+
homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview'
- url = 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/parmetis-4.0.3.tar.gz'
+ base_url = 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis'
version('4.0.3', 'f69c479586bf6bb7aff6a9bc0c739628')
+ version('4.0.2', '0912a953da5bb9b5e5e10542298ffdce')
variant('shared', default=True, description='Enables the build of shared libraries')
variant('debug', default=False, description='Builds the library in debug mode')
variant('gdb', default=False, description='Enables gdb support')
- depends_on('cmake @2.8:') # build dependency
+ depends_on('cmake@2.8:') # build dependency
depends_on('mpi')
-
- patch('enable_external_metis.patch')
depends_on('metis@5:')
+ patch('enable_external_metis.patch')
# bug fixes from PETSc developers
- # https://bitbucket.org/petsc/pkg-parmetis/commits/1c1a9fd0f408dc4d42c57f5c3ee6ace411eb222b/raw/
+ # https://bitbucket.org/petsc/pkg-parmetis/commits/1c1a9fd0f408dc4d42c57f5c3ee6ace411eb222b/raw/ # NOQA: ignore=E501
patch('pkg-parmetis-1c1a9fd0f408dc4d42c57f5c3ee6ace411eb222b.patch')
- # https://bitbucket.org/petsc/pkg-parmetis/commits/82409d68aa1d6cbc70740d0f35024aae17f7d5cb/raw/
+ # https://bitbucket.org/petsc/pkg-parmetis/commits/82409d68aa1d6cbc70740d0f35024aae17f7d5cb/raw/ # NOQA: ignore=E501
patch('pkg-parmetis-82409d68aa1d6cbc70740d0f35024aae17f7d5cb.patch')
- depends_on('gdb', when='+gdb')
+ def url_for_version(self, version):
+ verdir = 'OLD/' if version < Version('3.2.0') else ''
+ return '%s/%sparmetis-%s.tar.gz' % (Parmetis.base_url, verdir, version)
def install(self, spec, prefix):
options = []
@@ -60,30 +63,27 @@ class Parmetis(Package):
build_directory = join_path(self.stage.path, 'spack-build')
source_directory = self.stage.source_path
- metis_source = join_path(source_directory, 'metis')
- # FIXME : Once a contract is defined, MPI compilers should be retrieved indirectly via spec['mpi'] in case
- # FIXME : they use a non-standard name
- options.extend(['-DGKLIB_PATH:PATH={metis_source}/GKlib'.format(metis_source=spec['metis'].prefix.include),
- '-DMETIS_PATH:PATH={metis_source}'.format(metis_source=spec['metis'].prefix),
- '-DCMAKE_C_COMPILER:STRING=mpicc',
- '-DCMAKE_CXX_COMPILER:STRING=mpicxx'])
+ options.extend([
+ '-DGKLIB_PATH:PATH=%s/GKlib' % spec['metis'].prefix.include,
+ '-DMETIS_PATH:PATH=%s' % spec['metis'].prefix,
+ '-DCMAKE_C_COMPILER:STRING=%s' % spec['mpi'].mpicc,
+ '-DCMAKE_CXX_COMPILER:STRING=%s' % spec['mpi'].mpicxx
+ ])
if '+shared' in spec:
options.append('-DSHARED:BOOL=ON')
-
if '+debug' in spec:
options.extend(['-DDEBUG:BOOL=ON',
'-DCMAKE_BUILD_TYPE:STRING=Debug'])
-
if '+gdb' in spec:
options.append('-DGDB:BOOL=ON')
with working_dir(build_directory, create=True):
cmake(source_directory, *options)
make()
- make("install")
+ make('install')
- # The shared library is not installed correctly on Darwin; correct this
+ # The shared library is not installed correctly on Darwin; fix this
if (sys.platform == 'darwin') and ('+shared' in spec):
fix_darwin_install_name(prefix.lib)
generated by cgit v1.2.3-70-g09d2 (git 2.46.0) at 2024-11-06 05:30:22 +0000