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Diffstat (limited to 'var')
-rw-r--r-- | var/spack/repos/builtin/packages/halc/package.py | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/halc/package.py b/var/spack/repos/builtin/packages/halc/package.py new file mode 100644 index 0000000000..2e9b50779a --- /dev/null +++ b/var/spack/repos/builtin/packages/halc/package.py @@ -0,0 +1,48 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Halc(MakefilePackage): + """HALC is software that makes error correction for long reads with + high throughput.""" + + homepage = "https://github.com/lanl001/halc" + url = "https://github.com/lanl001/halc/archive/v1.1.tar.gz" + + version('1.1', '4b289b366f6a5400ca481993aa68dd9c') + + depends_on('blasr', type='run') + depends_on('lordec', type='run') + depends_on('dos2unix', type='build') + depends_on('python', type='run') + + parallel = False + + def install(self, spec, prefix): + install_tree('bin', prefix.bin) + install('runHALC.py', prefix.bin) + dos2unix = which('dos2unix') + dos2unix(join_path(self.prefix.bin, 'runHALC.py')) |