diff options
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/pbbam/package.py | 37 |
1 files changed, 17 insertions, 20 deletions
diff --git a/var/spack/repos/builtin/packages/pbbam/package.py b/var/spack/repos/builtin/packages/pbbam/package.py index 31626b9f54..3b53c8c896 100644 --- a/var/spack/repos/builtin/packages/pbbam/package.py +++ b/var/spack/repos/builtin/packages/pbbam/package.py @@ -4,46 +4,43 @@ # SPDX-License-Identifier: (Apache-2.0 OR MIT) from spack.package import * -from spack.pkg.builtin.boost import Boost -class Pbbam(CMakePackage): +class Pbbam(MesonPackage): """The pbbam software package provides components to create, query, & edit PacBio BAM files and associated indices. These components include a core C++ library, bindings for additional languages, and command-line utilities.""" homepage = "https://github.com/PacificBiosciences/pbbam" - url = "https://github.com/PacificBiosciences/pbbam/archive/0.18.0.tar.gz" - + url = "https://github.com/PacificBiosciences/pbbam/archive/refs/tags/0.18.0.tar.gz" + maintainers = ["snehring"] + + version( + "2.1.0", + sha256="605944f09654d964ce12c31d67e6766dfb1513f730ef5d4b74829b2b84dd464f", + url="https://github.com/PacificBiosciences/pbbam/archive/refs/tags/v2.1.0.tar.gz", + ) version("0.18.0", sha256="45286e5f7deb7ff629e0643c8a416155915aec7b85d54c60b5cdc07f4d7b234a") depends_on("zlib") depends_on("boost@1.55.0:") - - # TODO: replace this with an explicit list of components of Boost, - # for instance depends_on('boost +filesystem') - # See https://github.com/spack/spack/pull/22303 for reference - depends_on(Boost.with_default_variants) depends_on("htslib@1.3.1:") - depends_on("doxygen+graphviz") - - conflicts("%gcc@:5.2.0") + # newer versions require C17 + conflicts("%gcc@:7.5.0", when="@2.1.0:") + conflicts("%clang@:6.0.1", when="@2.1.0:") - def cmake_args(self): + def meson_args(self): options = [] if self.run_tests: - options.append("-DPacBioBAM_build_tests:BOOL=ON") + options.append("-Dtests=true") else: - options.append("-DPacBioBAM_build_tests:BOOL=OFF") + options.append("-Dtests=false") return options - def install(self, spec, prefix): - with working_dir(self.build_directory): - install_tree("bin", prefix.bin) - install_tree("lib", prefix.lib) - install_tree("pbbam", prefix.include.pbbam) + def setup_build_environment(self, env): + env.set("BOOST_ROOT", self.spec["boost"].prefix) def setup_dependent_build_environment(self, env, dependent_spec): env.set("PacBioBAM_LIBRARIES", self.prefix.lib) |