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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-yarn/package.py | 53 |
1 files changed, 53 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-yarn/package.py b/var/spack/repos/builtin/packages/r-yarn/package.py new file mode 100644 index 0000000000..5bb0a2bf36 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-yarn/package.py @@ -0,0 +1,53 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RYarn(RPackage): + """Expedite large RNA-Seq analyses using a combination of previously + developed tools. YARN is meant to make it easier for the user in + performing basic mis-annotation quality control, filtering, and + condition-aware normalization. YARN leverages many Bioconductor tools + and statistical techniques to account for the large heterogeneity and + sparsity found in very large RNA-seq experiments.""" + + homepage = "http://www.example.co://www.bioconductor.org/packages/yarn/" + url = "https://git.bioconductor.org/packages/yarn" + list_url = homepage + + version('1.2.0', git='https://git.bioconductor.org/packages/yarn', commit='28af616ef8c27dcadf6568e276dea8465486a697') + + depends_on('r-biobase', type=('build', 'run')) + depends_on('r-biomart', type=('build', 'run')) + depends_on('r-downloader', type=('build', 'run')) + depends_on('r-edger', type=('build', 'run')) + depends_on('r-gplots', type=('build', 'run')) + depends_on('r-limma', type=('build', 'run')) + depends_on('r-matrixstats', type=('build', 'run')) + depends_on('r-preprocesscore', type=('build', 'run')) + depends_on('r-readr', type=('build', 'run')) + depends_on('r-rcolorbrewer', type=('build', 'run')) + depends_on('r-quantro', type=('build', 'run')) + depends_on('r@3.4.0:3.4.9', when='@1.2.0') |