diff options
Diffstat (limited to 'var')
138 files changed, 1329 insertions, 259 deletions
diff --git a/var/spack/repos/builtin/packages/atlas/package.py b/var/spack/repos/builtin/packages/atlas/package.py index b31e365336..89b61b3ecb 100644 --- a/var/spack/repos/builtin/packages/atlas/package.py +++ b/var/spack/repos/builtin/packages/atlas/package.py @@ -37,6 +37,9 @@ class Atlas(Package): """ homepage = "http://math-atlas.sourceforge.net/" + version('3.10.3', 'd6ce4f16c2ad301837cfb3dade2f7cef', + url='https://sourceforge.net/projects/math-atlas/files/Stable/3.10.3/atlas3.10.3.tar.bz2') + version('3.10.2', 'a4e21f343dec8f22e7415e339f09f6da', url='https://sourceforge.net/projects/math-atlas/files/Stable/3.10.2/atlas3.10.2.tar.bz2', preferred=True) # not all packages (e.g. Trilinos@12.6.3) stopped using deprecated in 3.6.0 diff --git a/var/spack/repos/builtin/packages/boost/package.py b/var/spack/repos/builtin/packages/boost/package.py index 22351a2c3a..90fe28fc2c 100644 --- a/var/spack/repos/builtin/packages/boost/package.py +++ b/var/spack/repos/builtin/packages/boost/package.py @@ -110,12 +110,14 @@ class Boost(Package): description="Additionally build shared libraries") variant('multithreaded', default=True, description="Build multi-threaded versions of libraries") - variant('singlethreaded', default=True, + variant('singlethreaded', default=False, description="Build single-threaded versions of libraries") variant('icu', default=False, description="Build with Unicode and ICU suport") variant('graph', default=False, description="Build the Boost Graph library") + variant('taggedlayout', default=False, + description="Augment library names with build options") depends_on('icu4c', when='+icu') depends_on('python', when='+python') @@ -208,12 +210,20 @@ class Boost(Package): if '+singlethreaded' in spec: threadingOpts.append('single') if not threadingOpts: - raise RuntimeError("""At least one of {singlethreaded, - multithreaded} must be enabled""") + raise RuntimeError("At least one of {singlethreaded, " + + "multithreaded} must be enabled") + + if '+taggedlayout' in spec: + layout = 'tagged' + else: + if len(threadingOpts) > 1: + raise RuntimeError("Cannot build both single and " + + "multi-threaded targets with system layout") + layout = 'system' options.extend([ 'link=%s' % ','.join(linkTypes), - '--layout=tagged' + '--layout=%s' % layout ]) if not spec.satisfies('%intel'): @@ -223,6 +233,12 @@ class Boost(Package): return threadingOpts + def add_buildopt_symlinks(self, prefix): + with working_dir(prefix.lib): + for lib in os.listdir(os.curdir): + prefix, remainder = lib.split('.', 1) + symlink(lib, '%s-mt.%s' % (prefix, remainder)) + def install(self, spec, prefix): # On Darwin, Boost expects the Darwin libtool. However, one of the # dependencies may have pulled in Spack's GNU libtool, and these two @@ -281,11 +297,16 @@ class Boost(Package): threadingOpts = self.determine_b2_options(spec, b2_options) + b2('--clean') + # In theory it could be done on one call but it fails on # Boost.MPI if the threading options are not separated. for threadingOpt in threadingOpts: b2('install', 'threading=%s' % threadingOpt, *b2_options) + if '+multithreaded' in spec and '~taggedlayout' in spec: + self.add_buildopt_symlinks(prefix) + # The shared libraries are not installed correctly # on Darwin; correct this if (sys.platform == 'darwin') and ('+shared' in spec): diff --git a/var/spack/repos/builtin/packages/cantera/package.py b/var/spack/repos/builtin/packages/cantera/package.py index 9a9bc5bdbd..66e1197669 100644 --- a/var/spack/repos/builtin/packages/cantera/package.py +++ b/var/spack/repos/builtin/packages/cantera/package.py @@ -96,8 +96,7 @@ class Cantera(Package): options.extend([ 'build_thread_safe=yes', 'boost_inc_dir={0}'.format(spec['boost'].prefix.include), - 'boost_lib_dir={0}'.format(spec['boost'].prefix.lib), - 'boost_thread_lib=boost_thread-mt,boost_system-mt' + 'boost_lib_dir={0}'.format(spec['boost'].prefix.lib) ]) else: options.append('build_thread_safe=no') diff --git a/var/spack/repos/builtin/packages/cgal/package.py b/var/spack/repos/builtin/packages/cgal/package.py index d986f77487..ebfd3f9250 100644 --- a/var/spack/repos/builtin/packages/cgal/package.py +++ b/var/spack/repos/builtin/packages/cgal/package.py @@ -85,7 +85,7 @@ class Cgal(Package): else: options.append('-DBUILD_SHARED_LIBS:BOOL=OFF') - cmake('.', *options) - - make() - make('install') + with working_dir('spack-build', create=True): + cmake('..', *options) + make() + make('install') diff --git a/var/spack/repos/builtin/packages/charm/package.py b/var/spack/repos/builtin/packages/charm/package.py index d67ac80de1..1ec53c2138 100644 --- a/var/spack/repos/builtin/packages/charm/package.py +++ b/var/spack/repos/builtin/packages/charm/package.py @@ -23,6 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## +import os import platform import shutil import sys @@ -47,6 +48,8 @@ class Charm(Package): # Support OpenMPI; see # <https://charm.cs.illinois.edu/redmine/issues/1206> patch("mpi.patch") + # Ignore compiler warnings while configuring + patch("strictpass.patch") # Communication mechanisms (choose exactly one) # TODO: Support Blue Gene/Q PAMI, Cray GNI, Cray shmem, CUDA @@ -169,4 +172,19 @@ class Charm(Package): # this wouldn't be difficult. build = Executable(join_path(".", "build")) build(target, version, *options) + + # Charm++'s install script does not copy files, it only creates + # symbolic links. Fix this. + for dirpath, dirnames, filenames in os.walk(prefix): + for filename in filenames: + filepath = join_path(dirpath, filename) + if os.path.islink(filepath): + tmppath = filepath + ".tmp" + # Skip dangling symbolic links + try: + shutil.copy2(filepath, tmppath) + os.remove(filepath) + os.rename(tmppath, filepath) + except: + pass shutil.rmtree(join_path(prefix, "tmp")) diff --git a/var/spack/repos/builtin/packages/charm/strictpass.patch b/var/spack/repos/builtin/packages/charm/strictpass.patch new file mode 100644 index 0000000000..44aa4fbd38 --- /dev/null +++ b/var/spack/repos/builtin/packages/charm/strictpass.patch @@ -0,0 +1,16 @@ +--- old/src/scripts/configure ++++ new/src/scripts/configure +@@ -2146,13 +2146,6 @@ + test_result $? "$1" "$2" "$3" + strictpass=$pass + strictfail=$fail +- if test $pass -eq 1 +- then +- if cat out | grep -i "warn" > /dev/null 2>&1 +- then +- strictpass="0" && strictfail="1" +- fi +- fi + cat out >> $charmout + /bin/rm -f out + } diff --git a/var/spack/repos/builtin/packages/converge/package.py b/var/spack/repos/builtin/packages/converge/package.py new file mode 100644 index 0000000000..429be8542d --- /dev/null +++ b/var/spack/repos/builtin/packages/converge/package.py @@ -0,0 +1,69 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * +from distutils.dir_util import copy_tree +import os + + +class Converge(Package): + """CONVERGE is a revolutionary computational fluid dynamics (CFD) program + that eliminates the grid generation bottleneck from the simulation process. + CONVERGE was developed by engine simulation experts and is straightforward + to use for both engine and non-engine simulations. Unlike many CFD + programs, CONVERGE automatically generates a perfectly orthogonal, + structured grid at runtime based on simple, user-defined grid control + parameters. This grid generation method completely eliminates the need to + manually generate a grid. In addition, CONVERGE offers many other features + to expedite the setup process and to ensure that your simulations are as + computationally efficient as possible. + + Note: CONVERGE is licensed software. You will need to create an account on + the CONVERGE homepage and download CONVERGE yourself. Spack will search + your current directory for the download file. Alternatively, add this file + to a mirror so that Spack can find it. For instructions on how to set up a + mirror, see http://spack.readthedocs.io/en/latest/mirrors.html""" + + homepage = "https://www.convergecfd.com/" + url = "file://%s/converge_install_2.3.16.tar.gz" % os.getcwd() + + version('2.3.16', '8b80f1e73a63181c427c7732ad279986') + + variant('mpi', default=True, description='Build with MPI support') + + # The Converge Getting Started Guide recommends: + # MPICH: 3.1.4 + # HP-MPI: 2.0.3+ + # OpenMPI: 1.6.* + depends_on('mpi', when='+mpi') + + # Licensing + license_required = True + license_comment = '#' + license_files = ['license/license.lic'] + license_vars = ['RLM_LICENSE'] + license_url = 'http://www.reprisesoftware.com/RLM_License_Administration.pdf' + + def install(self, spec, prefix): + copy_tree('.', prefix) diff --git a/var/spack/repos/builtin/packages/dealii/package.py b/var/spack/repos/builtin/packages/dealii/package.py index 0d293e5d92..1dee94bfff 100644 --- a/var/spack/repos/builtin/packages/dealii/package.py +++ b/var/spack/repos/builtin/packages/dealii/package.py @@ -32,6 +32,10 @@ class Dealii(Package): homepage = "https://www.dealii.org" url = "https://github.com/dealii/dealii/releases/download/v8.4.1/dealii-8.4.1.tar.gz" + # Don't add RPATHs to this package for the full build DAG. + # only add for immediate deps. + transitive_rpaths = False + version('8.4.2', '84c6bd3f250d3e0681b645d24cb987a7') version('8.4.1', 'efbaf16f9ad59cfccad62302f36c3c1d') version('8.4.0', 'ac5dbf676096ff61e092ce98c80c2b00') diff --git a/var/spack/repos/builtin/packages/everytrace-example/package.py b/var/spack/repos/builtin/packages/everytrace-example/package.py new file mode 100644 index 0000000000..8a85423192 --- /dev/null +++ b/var/spack/repos/builtin/packages/everytrace-example/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class EverytraceExample(CMakePackage): + """Get stack trace EVERY time a program exits.""" + + homepage = "https://github.com/citibeth/everytrace-example" + version('develop', + git='https://github.com/citibeth/everytrace-example.git', + branch='develop') + + depends_on('cmake', type='build') + depends_on('everytrace+mpi+fortran') + + # Currently the only MPI this everytrace works with. + depends_on('openmpi') + + def configure_args(self): + return [] + + def setup_environment(self, spack_env, env): + env.prepend_path('PATH', join_path(self.prefix, 'bin')) diff --git a/var/spack/repos/builtin/packages/everytrace/package.py b/var/spack/repos/builtin/packages/everytrace/package.py new file mode 100644 index 0000000000..ee1a058009 --- /dev/null +++ b/var/spack/repos/builtin/packages/everytrace/package.py @@ -0,0 +1,52 @@ +############################################################################## +# Copyright (c) 2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Everytrace(CMakePackage): + """Get stack trace EVERY time a program exits.""" + + homepage = "https://github.com/citibeth/everytrace" + url = "https://github.com/citibeth/everytrace/tarball/0.2.0" + + version('0.2.0', '2af0e5b6255064d5191accebaa70d222') + version('develop', + git='https://github.com/citibeth/everytrace.git', branch='develop') + + variant('mpi', default=True, description='Enables MPI parallelism') + variant('fortran', default=True, + description='Enable use with Fortran programs') + + depends_on('cmake', type='build') + depends_on('mpi', when='+mpi') + + def configure_args(self): + spec = self.spec + return [ + '-DUSE_MPI=%s' % ('YES' if '+mpi' in spec else 'NO'), + '-DUSE_FORTRAN=%s' % ('YES' if '+fortran' in spec else 'NO')] + + def setup_environment(self, spack_env, env): + env.prepend_path('PATH', join_path(self.prefix, 'bin')) diff --git a/var/spack/repos/builtin/packages/fenics/package.py b/var/spack/repos/builtin/packages/fenics/package.py index fd9a37df1b..1dc302fdff 100644 --- a/var/spack/repos/builtin/packages/fenics/package.py +++ b/var/spack/repos/builtin/packages/fenics/package.py @@ -143,7 +143,7 @@ class Fenics(Package): def install(self, spec, prefix): for package in ['ufl', 'ffc', 'fiat', 'instant']: with working_dir(join_path('depends', package)): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) cmake_args = [ '-DCMAKE_BUILD_TYPE:STRING={0}'.format( diff --git a/var/spack/repos/builtin/packages/flint/package.py b/var/spack/repos/builtin/packages/flint/package.py new file mode 100644 index 0000000000..c39b17db2c --- /dev/null +++ b/var/spack/repos/builtin/packages/flint/package.py @@ -0,0 +1,66 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Flint(Package): + """FLINT (Fast Library for Number Theory).""" + + homepage = "http://www.flintlib.org" + url = "http://mirrors.mit.edu/sage/spkg/upstream/flint/flint-2.5.2.tar.gz" + + version('2.5.2', 'cda885309362150196aed66a5e0f0383') + version('2.4.5', '6504b9deabeafb9313e57153a1730b33') + version('develop', git='https://github.com/wbhart/flint2.git') + + # Overlap in functionality between gmp and mpir + # All other dependencies must also be built with + # one or the other + # variant('mpir', default=False, + # description='Compile with the MPIR library') + + # Build dependencies + depends_on('autoconf', type='build') + + # Other dependencies + depends_on('gmp') # mpir is a drop-in replacement for this + depends_on('mpfr') # Could also be built against mpir + + def install(self, spec, prefix): + options = [] + options = ["--prefix=%s" % prefix, + "--with-gmp=%s" % spec['gmp'].prefix, + "--with-mpfr=%s" % spec['mpfr'].prefix] + + # if '+mpir' in spec: + # options.extend([ + # "--with-mpir=%s" % spec['mpir'].prefix + # ]) + + configure(*options) + make() + if self.run_tests: + make("check") + make("install") diff --git a/var/spack/repos/builtin/packages/gmp/package.py b/var/spack/repos/builtin/packages/gmp/package.py index ddc2dbb935..de872f09e0 100644 --- a/var/spack/repos/builtin/packages/gmp/package.py +++ b/var/spack/repos/builtin/packages/gmp/package.py @@ -40,4 +40,9 @@ class Gmp(AutotoolsPackage): depends_on('m4', type='build') def configure_args(self): - return ['--enable-cxx'] + args = ['--enable-cxx'] + # We need this flag if we want all the following checks to pass. + if spec.compiler.name == 'intel': + args.append('CXXFLAGS=-no-ftz') + + return args diff --git a/var/spack/repos/builtin/packages/gsl/package.py b/var/spack/repos/builtin/packages/gsl/package.py index 574d3b9402..da17c4a330 100644 --- a/var/spack/repos/builtin/packages/gsl/package.py +++ b/var/spack/repos/builtin/packages/gsl/package.py @@ -38,6 +38,7 @@ class Gsl(Package): homepage = "http://www.gnu.org/software/gsl" url = "http://mirror.switch.ch/ftp/mirror/gnu/gsl/gsl-2.1.tar.gz" + version('2.2.1', '3d90650b7cfe0a6f4b29c2d7b0f86458') version('2.1', 'd8f70abafd3e9f0bae03c52d1f4e8de5') version('2.0', 'ae44cdfed78ece40e73411b63a78c375') version('1.16', 'e49a664db13d81c968415cd53f62bc8b') diff --git a/var/spack/repos/builtin/packages/hdf/package.py b/var/spack/repos/builtin/packages/hdf/package.py index 9a44184256..2554bd0f96 100644 --- a/var/spack/repos/builtin/packages/hdf/package.py +++ b/var/spack/repos/builtin/packages/hdf/package.py @@ -34,13 +34,14 @@ class Hdf(Package): list_url = "https://www.hdfgroup.org/ftp/HDF/releases/" list_depth = 3 + version('4.2.12', '79fd1454c899c05e34a3da0456ab0c1c') version('4.2.11', '063f9928f3a19cc21367b71c3b8bbf19') variant('szip', default=False, description="Enable szip support") - depends_on('jpeg') + depends_on('jpeg@6b:') depends_on('szip', when='+szip') - depends_on('zlib') + depends_on('zlib@1.1.4:') depends_on('bison', type='build') depends_on('flex', type='build') @@ -48,9 +49,9 @@ class Hdf(Package): def install(self, spec, prefix): config_args = [ 'CFLAGS=-fPIC', - '--prefix=%s' % prefix, - '--with-jpeg=%s' % spec['jpeg'].prefix, - '--with-zlib=%s' % spec['zlib'].prefix, + '--prefix={0}'.format(prefix), + '--with-jpeg={0}'.format(spec['jpeg'].prefix), + '--with-zlib={0}'.format(spec['zlib'].prefix), '--disable-netcdf', # must be disabled to build NetCDF with HDF4 '--enable-fortran', '--disable-shared', # fortran and shared libs are not compatible @@ -58,12 +59,17 @@ class Hdf(Package): '--enable-production' ] - # SZip support + # Szip support if '+szip' in spec: - config_args.append('--with-szlib=%s' % spec['szip'].prefix) + config_args.append('--with-szlib={0}'.format(spec['szip'].prefix)) + else: + config_args.append('--without-szlib') configure(*config_args) make() - make('check') + + if self.run_tests: + make('check') + make('install') diff --git a/var/spack/repos/builtin/packages/hdf5/package.py b/var/spack/repos/builtin/packages/hdf5/package.py index b5a7a65083..6b18aa4ab8 100644 --- a/var/spack/repos/builtin/packages/hdf5/package.py +++ b/var/spack/repos/builtin/packages/hdf5/package.py @@ -60,7 +60,7 @@ class Hdf5(AutotoolsPackage): depends_on('mpi', when='+mpi') depends_on('szip', when='+szip') - depends_on('zlib') + depends_on('zlib@1.1.2:') @AutotoolsPackage.precondition('configure') def validate(self): @@ -123,16 +123,14 @@ class Hdf5(AutotoolsPackage): # this is not actually a problem. extra_args.extend([ "--enable-parallel", - "CC=%s" % join_path(spec['mpi'].prefix.bin, "mpicc"), + "CC=%s" % spec['mpi'].mpicc ]) if '+cxx' in spec: - extra_args.append("CXX=%s" % join_path(spec['mpi'].prefix.bin, - "mpic++")) + extra_args.append("CXX=%s" % spec['mpi'].mpicxx) if '+fortran' in spec: - extra_args.append("FC=%s" % join_path(spec['mpi'].prefix.bin, - "mpifort")) + extra_args.append("FC=%s" % spec['mpi'].mpifc) if '+szip' in spec: extra_args.append("--with-szlib=%s" % spec['szip'].prefix) @@ -172,7 +170,7 @@ HDF5 version {version} {version} with open("check.c", 'w') as f: f.write(source) if '+mpi' in spec: - cc = which(join_path(spec['mpi'].prefix.bin, "mpicc")) + cc = which('%s' % spec['mpi'].mpicc) else: cc = which('cc') # TODO: Automate these path and library settings diff --git a/var/spack/repos/builtin/packages/hpx5/package.py b/var/spack/repos/builtin/packages/hpx5/package.py index 686e959719..fe75c256f8 100644 --- a/var/spack/repos/builtin/packages/hpx5/package.py +++ b/var/spack/repos/builtin/packages/hpx5/package.py @@ -37,15 +37,16 @@ class Hpx5(Package): applications enabling scientists to write code that performs and scales better than contemporary runtimes.""" homepage = "http://hpx.crest.iu.edu" - url = "http://hpx.crest.iu.edu/release/hpx-2.0.0.tar.gz" + url = "http://hpx.crest.iu.edu/release/hpx-3.1.0.tar.gz" + version('3.1.0', '9e90b8ac46788c009079632828c77628') version('2.0.0', '3d2ff3aab6c46481f9ec65c5b2bfe7a6') version('1.3.0', '2260ecc7f850e71a4d365a43017d8cee') version('1.2.0', '4972005f85566af4afe8b71afbf1480f') version('1.1.0', '646afb460ecb7e0eea713a634933ce4f') version('1.0.0', '8020822adf6090bd59ed7fe465f6c6cb') - variant('debug', default=False, description='Build a debug version of HPX-5') + variant('debug', default=False, description='Build debug version of HPX-5') variant('photon', default=False, description='Enable Photon support') variant('mpi', default=False, description='Enable MPI support') diff --git a/var/spack/repos/builtin/packages/hypre/package.py b/var/spack/repos/builtin/packages/hypre/package.py index f22303a864..53c3b851b3 100644 --- a/var/spack/repos/builtin/packages/hypre/package.py +++ b/var/spack/repos/builtin/packages/hypre/package.py @@ -61,9 +61,9 @@ class Hypre(Package): configure_args = [ '--prefix=%s' % prefix, '--with-lapack-libs=%s' % ' '.join(lapack.names), - '--with-lapack-lib-dirs=%s' % spec['lapack'].prefix.lib, + '--with-lapack-lib-dirs=%s' % ' '.join(lapack.directories), '--with-blas-libs=%s' % ' '.join(blas.names), - '--with-blas-lib-dirs=%s' % spec['blas'].prefix.lib + '--with-blas-lib-dirs=%s' % ' '.join(blas.directories) ] if '+shared' in self.spec: diff --git a/var/spack/repos/builtin/packages/libcerf/package.py b/var/spack/repos/builtin/packages/libcerf/package.py index 7fb47f8dcd..1964f03b95 100644 --- a/var/spack/repos/builtin/packages/libcerf/package.py +++ b/var/spack/repos/builtin/packages/libcerf/package.py @@ -38,6 +38,12 @@ class Libcerf(Package): version('1.3', 'b3504c467204df71e62aeccf73a25612') def install(self, spec, prefix): - configure('--prefix=%s' % prefix) + options = [] + # Clang reports unused functions as errors, see + # http://clang.debian.net/status.php?version=3.8.1&key=UNUSED_FUNCTION + if spec.satisfies('%clang'): + options.append('CFLAGS=-Wno-unused-function') + + configure('--prefix=%s' % prefix, *options) make() make("install") diff --git a/var/spack/repos/builtin/packages/libjpeg-turbo/package.py b/var/spack/repos/builtin/packages/libjpeg-turbo/package.py index 6252a88542..3fe159d7b9 100644 --- a/var/spack/repos/builtin/packages/libjpeg-turbo/package.py +++ b/var/spack/repos/builtin/packages/libjpeg-turbo/package.py @@ -26,20 +26,25 @@ from spack import * class LibjpegTurbo(Package): - """libjpeg-turbo is a fork of the original IJG libjpeg which uses - SIMD to accelerate baseline JPEG compression and - decompression. libjpeg is a library that implements JPEG image - encoding, decoding and transcoding.""" + """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to + accelerate baseline JPEG compression and decompression. libjpeg is a + library that implements JPEG image encoding, decoding and + transcoding.""" + homepage = "http://libjpeg-turbo.virtualgl.org" url = "http://downloads.sourceforge.net/libjpeg-turbo/libjpeg-turbo-1.3.1.tar.gz" + version('1.5.0', '3fc5d9b6a8bce96161659ae7a9939257') version('1.3.1', '2c3a68129dac443a72815ff5bb374b05') - # Can use either of these. - depends_on("yasm", type='build') + # Can use either of these. But in the current version of the package + # only nasm is used. In order to use yasm an environmental variable + # NASM must be set. + # TODO: Implement the selection between two supported assemblers. + # depends_on("yasm", type='build') depends_on("nasm", type='build') def install(self, spec, prefix): - configure("--prefix=%s" % prefix) + configure("--prefix=" + prefix) make() make("install") diff --git a/var/spack/repos/builtin/packages/libsplash/package.py b/var/spack/repos/builtin/packages/libsplash/package.py index 21a6eede3f..c20e6fe192 100644 --- a/var/spack/repos/builtin/packages/libsplash/package.py +++ b/var/spack/repos/builtin/packages/libsplash/package.py @@ -37,6 +37,10 @@ class Libsplash(Package): homepage = "https://github.com/ComputationalRadiationPhysics/libSplash" url = "https://github.com/ComputationalRadiationPhysics/libSplash/archive/v1.4.0.tar.gz" + version('dev', branch='dev', + git='https://github.com/ComputationalRadiationPhysics/libSplash.git') + version('master', branch='master', + git='https://github.com/ComputationalRadiationPhysics/libSplash.git') version('1.4.0', '2de37bcef6fafa1960391bf44b1b50e0') version('1.3.1', '524580ba088d97253d03b4611772f37c') version('1.2.4', '3fccb314293d22966beb7afd83b746d0') diff --git a/var/spack/repos/builtin/packages/libtiff/package.py b/var/spack/repos/builtin/packages/libtiff/package.py index cef9fcaae5..6c282dee7c 100644 --- a/var/spack/repos/builtin/packages/libtiff/package.py +++ b/var/spack/repos/builtin/packages/libtiff/package.py @@ -27,9 +27,10 @@ from spack import * class Libtiff(Package): """libtiff graphics format library""" - homepage = "http://www.remotesensing.org/libtiff/" - url = "http://download.osgeo.org/libtiff/tiff-4.0.3.tar.gz" + homepage = "http://www.simplesystems.org/libtiff/" + url = "ftp://download.osgeo.org/libtiff/tiff-4.0.3.tar.gz" + version('4.0.6', 'd1d2e940dea0b5ad435f21f03d96dd72') version('4.0.3', '051c1068e6a0627f461948c365290410') depends_on('jpeg') diff --git a/var/spack/repos/builtin/packages/mfem/package.py b/var/spack/repos/builtin/packages/mfem/package.py index cbf9059f65..9aa4ab8cf0 100644 --- a/var/spack/repos/builtin/packages/mfem/package.py +++ b/var/spack/repos/builtin/packages/mfem/package.py @@ -23,8 +23,6 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import glob -import string class Mfem(Package): @@ -35,11 +33,11 @@ class Mfem(Package): version('3.2', '2938c3deed4ec4f7fd5b5f5cfe656845282e86e2dcd477d292390058b7b94340', - url='http://goo.gl/Y9T75B', expand=False, preferred=True) + url='http://goo.gl/Y9T75B', preferred=True, extension='.tar.gz') version('3.1', '841ea5cf58de6fae4de0f553b0e01ebaab9cd9c67fa821e8a715666ecf18fc57', - url='http://goo.gl/xrScXn', expand=False) + url='http://goo.gl/xrScXn', extension='.tar.gz') # version('3.1', git='https://github.com/mfem/mfem.git', # commit='dbae60fe32e071989b52efaaf59d7d0eb2a3b574') @@ -48,8 +46,11 @@ class Mfem(Package): variant('suite-sparse', default=False, description='Activate support for SuiteSparse') variant('mpi', default=False, description='Activate support for MPI') + variant('superlu-dist', default=False, + description='Activate support for SuperLU_Dist') variant('lapack', default=False, description='Activate support for LAPACK') variant('debug', default=False, description='Build debug version') + variant('netcdf', default=False, description='Activate NetCDF support') depends_on('blas', when='+lapack') depends_on('lapack', when='+lapack') @@ -68,6 +69,12 @@ class Mfem(Package): depends_on('metis@5:', when='+suite-sparse ^suite-sparse@4.5:') depends_on('cmake', when='^metis@5:', type='build') + depends_on('superlu-dist', when='@3.2: +superlu-dist') + + depends_on('netcdf', when='@3.2: +netcdf') + depends_on('zlib', when='@3.2: +netcdf') + depends_on('hdf5', when='@3.2: +netcdf') + def check_variants(self, spec): if '+mpi' in spec and ('+hypre' not in spec or '+metis' not in spec): raise InstallError('mfem+mpi must be built with +hypre ' + @@ -81,6 +88,12 @@ class Mfem(Package): raise InstallError('To work around CMake bug with clang, must ' + 'build mfem with mfem[+variants] %clang ' + '^cmake %gcc to force CMake to build with gcc') + if '@:3.1' in spec and '+superlu-dist' in spec: + raise InstallError('MFEM does not support SuperLU_DIST for ' + + 'versions 3.1 and earlier') + if '@:3.1' in spec and '+netcdf' in spec: + raise InstallError('MFEM does not support NetCDF for versions' + + '3.1 and earlier') return def install(self, spec, prefix): @@ -102,7 +115,14 @@ class Mfem(Package): 'HYPRE_LIB=-L%s' % spec['hypre'].prefix.lib + ' -lHYPRE']) - if '+metis' in spec: + if 'parmetis' in spec: + metis_lib = '-L%s -lparmetis -lmetis' % spec['parmetis'].prefix.lib + metis_str = 'MFEM_USE_METIS_5=YES' + options.extend([metis_str, + 'METIS_DIR=%s' % spec['parmetis'].prefix, + 'METIS_OPT=-I%s' % spec['parmetis'].prefix.include, + 'METIS_LIB=%s' % metis_lib]) + elif 'metis' in spec: metis_lib = '-L%s -lmetis' % spec['metis'].prefix.lib if spec['metis'].satisfies('@5:'): metis_str = 'MFEM_USE_METIS_5=YES' @@ -114,14 +134,27 @@ class Mfem(Package): 'METIS_OPT=-I%s' % spec['metis'].prefix.include, 'METIS_LIB=%s' % metis_lib]) - if '+mpi' in spec: + if 'mpi' in spec: options.extend(['MFEM_USE_MPI=YES']) + if '+superlu-dist' in spec: + superlu_lib = '-L%s' % spec['superlu-dist'].prefix.lib + superlu_lib += ' -lsuperlu_dist' + sl_inc = 'SUPERLU_OPT=-I%s' % spec['superlu-dist'].prefix.include + options.extend(['MFEM_USE_SUPERLU=YES', + 'SUPERLU_DIR=%s' % spec['superlu-dist'].prefix, + sl_inc, + 'SUPERLU_LIB=%s' % superlu_lib]) + if '+suite-sparse' in spec: ssp = spec['suite-sparse'].prefix ss_lib = '-L%s' % ssp.lib - ss_lib += (' -lumfpack -lcholmod -lcolamd -lamd -lcamd' + - ' -lccolamd -lsuitesparseconfig') + + if '@3.2:' in spec: + ss_lib += ' -lklu -lbtf' + + ss_lib += (' -lumfpack -lcholmod -lcolamd' + + ' -lamd -lcamd -lccolamd -lsuitesparseconfig') no_librt_archs = ['darwin-i686', 'darwin-x86_64'] no_rt = any(map(lambda a: spec.satisfies('=' + a), @@ -135,16 +168,23 @@ class Mfem(Package): 'SUITESPARSE_OPT=-I%s' % ssp.include, 'SUITESPARSE_LIB=%s' % ss_lib]) + if '+netcdf' in spec: + np = spec['netcdf'].prefix + zp = spec['zlib'].prefix + h5p = spec['hdf5'].prefix + nlib = '-L%s -lnetcdf ' % np.lib + nlib += '-L%s -lhdf5_hl -lhdf5 ' % h5p.lib + nlib += '-L%s -lz' % zp.lib + options.extend(['MFEM_USE_NETCDF=YES', + 'NETCDF_DIR=%s' % np, + 'HDF5_DIR=%s' % h5p, + 'ZLIB_DIR=%s' % zp, + 'NETCDF_OPT=-I%s' % np.include, + 'NETCDF_LIB=%s' % nlib]) + if '+debug' in spec: options.extend(['MFEM_DEBUG=YES']) - # Dirty hack to cope with URL redirect - tgz_file = string.split(self.url, '/')[-1] - tar = which('tar') - tar('xzvf', tgz_file) - cd(glob.glob('mfem*')[0]) - # End dirty hack to cope with URL redirect - make('config', *options) make('all') diff --git a/var/spack/repos/builtin/packages/mkl/package.py b/var/spack/repos/builtin/packages/mkl/package.py index 8a31858bf5..4a9a8785f7 100644 --- a/var/spack/repos/builtin/packages/mkl/package.py +++ b/var/spack/repos/builtin/packages/mkl/package.py @@ -66,13 +66,6 @@ class Mkl(IntelInstaller): for f in os.listdir(mkl_dir): os.symlink(os.path.join(mkl_dir, f), os.path.join(self.prefix, f)) - # Unfortunately MKL libs are natively distrubted in prefix/lib/intel64. - # To make MKL play nice with Spack, symlink all files to prefix/lib: - mkl_lib_dir = os.path.join(prefix, "lib", "intel64") - for f in os.listdir(mkl_lib_dir): - os.symlink(os.path.join(mkl_lib_dir, f), - os.path.join(self.prefix, "lib", f)) - def setup_dependent_environment(self, spack_env, run_env, dependent_spec): # set up MKLROOT for everyone using MKL package spack_env.set('MKLROOT', self.prefix) diff --git a/var/spack/repos/builtin/packages/mpc/package.py b/var/spack/repos/builtin/packages/mpc/package.py index 71cacd5dfe..2fe3900981 100644 --- a/var/spack/repos/builtin/packages/mpc/package.py +++ b/var/spack/repos/builtin/packages/mpc/package.py @@ -35,12 +35,12 @@ class Mpc(Package): version('1.0.3', 'd6a1d5f8ddea3abd2cc3e98f58352d26') version('1.0.2', '68fadff3358fb3e7976c7a398a0af4c3') - depends_on("gmp") - depends_on("mpfr") + depends_on('gmp') # mpir is a drop-in replacement for this + depends_on('mpfr') # Could also be built against mpir def url_for_version(self, version): if version < Version("1.0.1"): - return "http://www.multiprecision.org/mpc/download/mpc-%s.tar.gz" % version + return "http://www.multiprecision.org/mpc/download/mpc-%s.tar.gz" % version # NOQA else: return "ftp://ftp.gnu.org/gnu/mpc/mpc-%s.tar.gz" % version diff --git a/var/spack/repos/builtin/packages/mpfr/package.py b/var/spack/repos/builtin/packages/mpfr/package.py index 5777cd1926..4612d03849 100644 --- a/var/spack/repos/builtin/packages/mpfr/package.py +++ b/var/spack/repos/builtin/packages/mpfr/package.py @@ -35,7 +35,7 @@ class Mpfr(Package): version('3.1.3', '5fdfa3cfa5c86514ee4a241a1affa138') version('3.1.2', 'ee2c3ac63bf0c2359bf08fc3ee094c19') - depends_on('gmp') + depends_on('gmp') # mpir is a drop-in replacement for this def install(self, spec, prefix): configure("--prefix=%s" % prefix) diff --git a/var/spack/repos/builtin/packages/mpich/package.py b/var/spack/repos/builtin/packages/mpich/package.py index a36ab4206e..bb034f9fc7 100644 --- a/var/spack/repos/builtin/packages/mpich/package.py +++ b/var/spack/repos/builtin/packages/mpich/package.py @@ -27,9 +27,10 @@ from spack import * class Mpich(Package): """MPICH is a high performance and widely portable implementation of - the Message Passing Interface (MPI) standard.""" + the Message Passing Interface (MPI) standard.""" + homepage = "http://www.mpich.org" - url = "http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz" + url = "http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz" list_url = "http://www.mpich.org/static/downloads/" list_depth = 2 @@ -41,10 +42,10 @@ class Mpich(Package): version('3.1', '5643dd176499bfb7d25079aaff25f2ec') version('3.0.4', '9c5d5d4fe1e17dd12153f40bc5b6dbc0') - variant('verbs', default=False, - description='Build support for OpenFabrics verbs.') - variant('pmi', default=True, description='Build with PMI support') - variant('hydra', default=True, description='Build the hydra process manager') + variant('hydra', default=True, description='Build the hydra process manager') + variant('pmi', default=True, description='Build with PMI support') + variant('romio', default=True, description='Enable ROMIO MPI I/O implementation') + variant('verbs', default=False, description='Build support for OpenFabrics verbs.') provides('mpi@:3.0', when='@3:') provides('mpi@:1.3', when='@1:') @@ -62,26 +63,32 @@ class Mpich(Package): spack_env.set('MPICH_FC', spack_fc) def setup_dependent_package(self, module, dep_spec): - self.spec.mpicc = join_path(self.prefix.bin, 'mpicc') - self.spec.mpicxx = join_path(self.prefix.bin, 'mpic++') - self.spec.mpifc = join_path(self.prefix.bin, 'mpif90') - self.spec.mpif77 = join_path(self.prefix.bin, 'mpif77') + # Is this a Cray machine? (TODO: We need a better test than this.) + if os.environ.get('CRAYPE_VERSION'): + self.spec.mpicc = spack_cc + self.spec.mpicxx = spack_cxx + self.spec.mpifc = spack_fc + self.spec.mpif77 = spack_f77 + else: + self.spec.mpicc = join_path(self.prefix.bin, 'mpicc') + self.spec.mpicxx = join_path(self.prefix.bin, 'mpic++') + self.spec.mpifc = join_path(self.prefix.bin, 'mpif90') + self.spec.mpif77 = join_path(self.prefix.bin, 'mpif77') + self.spec.mpicxx_shared_libs = [ join_path(self.prefix.lib, 'libmpicxx.{0}'.format(dso_suffix)), join_path(self.prefix.lib, 'libmpi.{0}'.format(dso_suffix)) ] def install(self, spec, prefix): - config_args = ["--prefix=" + prefix, - "--with-pmi=" + ("yes" if '+pmi' in spec else 'no'), - "--with-pm=" + ('hydra' if '+hydra' in spec else 'no'), - "--enable-shared"] - - # Variants - if '+verbs' in spec: - config_args.append("--with-ibverbs") - else: - config_args.append("--without-ibverbs") + config_args = [ + '--prefix={0}'.format(prefix), + '--enable-shared', + '--with-pm={0}'.format('hydra' if '+hydra' in spec else 'no'), + '--with-pmi={0}'.format('yes' if '+pmi' in spec else 'no'), + '--{0}-romio'.format('enable' if '+romio' in spec else 'disable'), + '--{0}-ibverbs'.format('with' if '+verbs' in spec else 'without') + ] # TODO: Spack should make it so that you can't actually find # these compilers if they're "disabled" for the current @@ -96,32 +103,33 @@ class Mpich(Package): config_args.append("--disable-fortran") configure(*config_args) + make() - make("install") + make('check') + make('install') - self.filter_compilers() + self.filter_compilers(prefix) - def filter_compilers(self): + def filter_compilers(self, prefix): """Run after install to make the MPI compilers use the - compilers that Spack built the package with. - - If this isn't done, they'll have CC, CXX, F77, and FC set - to Spack's generic cc, c++, f77, and f90. We want them to - be bound to whatever compiler they were built with. - """ - bin = self.prefix.bin - mpicc = join_path(bin, 'mpicc') - mpicxx = join_path(bin, 'mpicxx') - mpif77 = join_path(bin, 'mpif77') - mpif90 = join_path(bin, 'mpif90') + compilers that Spack built the package with. + + If this isn't done, they'll have CC, CXX, F77, and FC set + to Spack's generic cc, c++, f77, and f90. We want them to + be bound to whatever compiler they were built with.""" + + mpicc = join_path(prefix.bin, 'mpicc') + mpicxx = join_path(prefix.bin, 'mpicxx') + mpif77 = join_path(prefix.bin, 'mpif77') + mpif90 = join_path(prefix.bin, 'mpif90') # Substitute Spack compile wrappers for the real # underlying compiler kwargs = {'ignore_absent': True, 'backup': False, 'string': True} - filter_file(env['CC'], self.compiler.cc, mpicc, **kwargs) + filter_file(env['CC'], self.compiler.cc, mpicc, **kwargs) filter_file(env['CXX'], self.compiler.cxx, mpicxx, **kwargs) filter_file(env['F77'], self.compiler.f77, mpif77, **kwargs) - filter_file(env['FC'], self.compiler.fc, mpif90, **kwargs) + filter_file(env['FC'], self.compiler.fc, mpif90, **kwargs) # Remove this linking flag if present # (it turns RPATH into RUNPATH) diff --git a/var/spack/repos/builtin/packages/mpir/package.py b/var/spack/repos/builtin/packages/mpir/package.py new file mode 100644 index 0000000000..b939a690b2 --- /dev/null +++ b/var/spack/repos/builtin/packages/mpir/package.py @@ -0,0 +1,62 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Mpir(Package): + """Multiple Precision Integers and Rationals.""" + + homepage = "https://github.com/wbhart/mpir" + url = "https://github.com/wbhart/mpir/archive/mpir-2.7.0.tar.gz" + + version('2.7.0', '985b5d57bd0e74c74125ee885b9c8f71') + version('2.6.0', 'ec17d6a7e026114ceb734b2466aa0a91') + version('develop', git='https://github.com/wbhart/mpir.git') + + # This setting allows mpir to act as a drop-in replacement for gmp + variant('gmp_compat', default=False, + description='Compile with GMP library compatibility') + + # Build dependencies + depends_on('autoconf', type='build') + + # Other dependencies + depends_on('yasm') + + def install(self, spec, prefix): + # We definitely don't want to have MPIR build its + # own version of YASM. This tries to install it + # to a system directory. + options = ['--prefix={0}'.format(prefix), + '--with-system-yasm'] + + if '+gmp_compat' in spec: + options.extend(['--enable-gmpcompat']) + + configure(*options) + make() + if self.run_tests: + make('check') + make('install') diff --git a/var/spack/repos/builtin/packages/mumps/package.py b/var/spack/repos/builtin/packages/mumps/package.py index 3466f091a0..e0d7a00c55 100644 --- a/var/spack/repos/builtin/packages/mumps/package.py +++ b/var/spack/repos/builtin/packages/mumps/package.py @@ -34,6 +34,8 @@ class Mumps(Package): homepage = "http://mumps.enseeiht.fr" url = "http://mumps.enseeiht.fr/MUMPS_5.0.1.tar.gz" + # Alternate location if main server is down. + # version('5.0.1', 'b477573fdcc87babe861f62316833db0', url='http://pkgs.fedoraproject.org/repo/pkgs/MUMPS/MUMPS_5.0.1.tar.gz/md5/b477573fdcc87babe861f62316833db0/MUMPS_5.0.1.tar.gz') version('5.0.1', 'b477573fdcc87babe861f62316833db0') variant('mpi', default=True, diff --git a/var/spack/repos/builtin/packages/nco/package.py b/var/spack/repos/builtin/packages/nco/package.py index a25d69d9f6..28dfe8f059 100644 --- a/var/spack/repos/builtin/packages/nco/package.py +++ b/var/spack/repos/builtin/packages/nco/package.py @@ -32,6 +32,7 @@ class Nco(Package): homepage = "https://sourceforge.net/projects/nco" url = "https://github.com/nco/nco/archive/4.5.5.tar.gz" + version('4.6.1', 'ef43cc989229c2790a9094bd84728fd8') version('4.5.5', '9f1f1cb149ad6407c5a03c20122223ce') # See "Compilation Requirements" at: @@ -39,18 +40,21 @@ class Nco(Package): variant('mpi', default=True) depends_on('netcdf') - depends_on('netcdf+mpi', when='+mpi') - depends_on('netcdf~mpi', when='~mpi') - depends_on('antlr@2.7.7+cxx') # (required for ncap2) - depends_on('gsl') # (desirable for ncap2) - depends_on('udunits2') # (allows dimensional unit transformations) - # depends_on('opendap') # (enables network transparency), + depends_on('antlr@2.7.7+cxx') # required for ncap2 + depends_on('gsl') # desirable for ncap2 + depends_on('udunits2') # allows dimensional unit transformations + # depends_on('opendap') # enables network transparency def install(self, spec, prefix): + # Workaround until variant forwarding works properly + if '+mpi' in spec and spec.satisfies('^netcdf~mpi'): + raise RuntimeError('Invalid spec. Package netcdf requires ' + 'netcdf+mpi, but spec asked for netcdf~mpi.') + opts = [ '--prefix=%s' % prefix, - '--disable-openmp', # TODO: Make this a variant - '--disable-dap', # TODO: Make this a variant + '--disable-openmp', # TODO: Make this a variant + '--disable-dap', # TODO: Make this a variant '--disable-esmf'] configure(*opts) make() diff --git a/var/spack/repos/builtin/packages/netcdf/package.py b/var/spack/repos/builtin/packages/netcdf/package.py index 5dc686c907..d4d7fd1691 100644 --- a/var/spack/repos/builtin/packages/netcdf/package.py +++ b/var/spack/repos/builtin/packages/netcdf/package.py @@ -46,10 +46,10 @@ class Netcdf(Package): depends_on("hdf", when='+hdf4') # Required for DAP support - depends_on("curl") + depends_on("curl@7.18.0:") # Required for NetCDF-4 support - depends_on("zlib") + depends_on("zlib@1.2.5:") depends_on('hdf5') # NetCDF 4.4.0 and prior have compatibility issues with HDF5 1.10 and later @@ -105,7 +105,7 @@ class Netcdf(Package): LDFLAGS.append("-L%s/lib" % spec['hdf'].prefix) LIBS.append("-l%s" % "jpeg") - if 'szip' in spec: + if '+szip' in spec: CPPFLAGS.append("-I%s/include" % spec['szip'].prefix) LDFLAGS.append("-L%s/lib" % spec['szip'].prefix) LIBS.append("-l%s" % "sz") @@ -120,4 +120,8 @@ class Netcdf(Package): configure(*config_args) make() + + if self.run_tests: + make("check") + make("install") diff --git a/var/spack/repos/builtin/packages/nettle/package.py b/var/spack/repos/builtin/packages/nettle/package.py index b4c873a8a1..7e2b758bc0 100644 --- a/var/spack/repos/builtin/packages/nettle/package.py +++ b/var/spack/repos/builtin/packages/nettle/package.py @@ -36,6 +36,7 @@ class Nettle(Package): version('2.7', '2caa1bd667c35db71becb93c5d89737f') depends_on('gmp') + depends_on('m4', type='build') def install(self, spec, prefix): configure('--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/pango/package.py b/var/spack/repos/builtin/packages/pango/package.py index 75c4ac807d..5cf3edb8da 100644 --- a/var/spack/repos/builtin/packages/pango/package.py +++ b/var/spack/repos/builtin/packages/pango/package.py @@ -41,6 +41,7 @@ class Pango(Package): depends_on("pkg-config", type="build") depends_on("harfbuzz") depends_on("cairo") + depends_on("glib") def install(self, spec, prefix): configure("--prefix=%s" % prefix) diff --git a/var/spack/repos/builtin/packages/piranha/package.py b/var/spack/repos/builtin/packages/piranha/package.py new file mode 100644 index 0000000000..dbf949f000 --- /dev/null +++ b/var/spack/repos/builtin/packages/piranha/package.py @@ -0,0 +1,73 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Piranha(Package): + """Piranha is a computer-algebra library for the symbolic manipulation of + sparse multivariate polynomials and other closely-related symbolic objects + (such as Poisson series).""" + + homepage = "https://bluescarni.github.io/piranha/sphinx/" + url = "https://github.com/bluescarni/piranha/archive/v0.5.tar.gz" + + version('0.5', '99546bae2be115737b6316751eb0b84d') + version('develop', git='https://github.com/bluescarni/piranha.git') + + variant('python', default=True, + description='Build the Python bindings') + + # Build dependencies + depends_on('cmake@3.0:', type='build') + extends('python', when='+pyranha') + depends_on('python@2.6:', type='build', when='+pyranha') + + # Other dependencies + depends_on('boost+iostreams+regex+serialization', + when='~python') + depends_on('boost+iostreams+regex+serialization+python', + when='+python') + depends_on('bzip2') + depends_on('gmp') # mpir is a drop-in replacement for this + depends_on('mpfr') # Could also be built against mpir + + def install(self, spec, prefix): + options = [] + options.extend(std_cmake_args) + + # Python bindings + options.extend([ + '-DBUILD_PYRANHA=%s' % ( + 'ON' if '+python' in spec else 'OFF'), + '-DBUILD_TESTS:BOOL=ON', + ]) + + with working_dir('spack-build', create=True): + cmake('..', *options) + + make() + make('install') + if self.run_tests: + make('test') diff --git a/var/spack/repos/builtin/packages/pixman/package.py b/var/spack/repos/builtin/packages/pixman/package.py index 41aad0c90a..8fe3e1f9d9 100644 --- a/var/spack/repos/builtin/packages/pixman/package.py +++ b/var/spack/repos/builtin/packages/pixman/package.py @@ -23,6 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * +import sys class Pixman(Package): @@ -38,8 +39,13 @@ class Pixman(Package): depends_on("libpng") def install(self, spec, prefix): - configure("--prefix=%s" % prefix, - "--disable-mmx", - "--disable-gtk") + config_args = ["--prefix=" + prefix, + "--disable-gtk"] + + if sys.platform == "darwin": + config_args.append("--disable-mmx") + + configure(*config_args) + make() make("install") diff --git a/var/spack/repos/builtin/packages/pngwriter/package.py b/var/spack/repos/builtin/packages/pngwriter/package.py index c51f1f82a8..4c0370a7ef 100644 --- a/var/spack/repos/builtin/packages/pngwriter/package.py +++ b/var/spack/repos/builtin/packages/pngwriter/package.py @@ -38,6 +38,10 @@ class Pngwriter(Package): homepage = "http://pngwriter.sourceforge.net/" url = "https://github.com/pngwriter/pngwriter/archive/0.5.6.tar.gz" + version('dev', branch='dev', + git='https://github.com/pngwriter/pngwriter.git') + version('master', branch='master', + git='https://github.com/pngwriter/pngwriter.git') version('0.5.6', 'c13bd1fdc0e331a246e6127b5f262136') depends_on('cmake', type='build') diff --git a/var/spack/repos/builtin/packages/py-3to2/package.py b/var/spack/repos/builtin/packages/py-3to2/package.py index 1071a3c209..d0b6857aaf 100644 --- a/var/spack/repos/builtin/packages/py-3to2/package.py +++ b/var/spack/repos/builtin/packages/py-3to2/package.py @@ -37,4 +37,4 @@ class Py3to2(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-SQLAlchemy/package.py b/var/spack/repos/builtin/packages/py-SQLAlchemy/package.py index ca59105b4c..73e144b00e 100644 --- a/var/spack/repos/builtin/packages/py-SQLAlchemy/package.py +++ b/var/spack/repos/builtin/packages/py-SQLAlchemy/package.py @@ -36,4 +36,4 @@ class PySqlalchemy(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-argcomplete/package.py b/var/spack/repos/builtin/packages/py-argcomplete/package.py index 2549972a6d..64312da9dc 100644 --- a/var/spack/repos/builtin/packages/py-argcomplete/package.py +++ b/var/spack/repos/builtin/packages/py-argcomplete/package.py @@ -36,4 +36,4 @@ class PyArgcomplete(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-astroid/package.py b/var/spack/repos/builtin/packages/py-astroid/package.py index a47b7ffa33..ff5683c705 100644 --- a/var/spack/repos/builtin/packages/py-astroid/package.py +++ b/var/spack/repos/builtin/packages/py-astroid/package.py @@ -42,4 +42,4 @@ class PyAstroid(Package): depends_on('py-six', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-astropy/package.py b/var/spack/repos/builtin/packages/py-astropy/package.py index 25dce87e49..1565db0bdd 100644 --- a/var/spack/repos/builtin/packages/py-astropy/package.py +++ b/var/spack/repos/builtin/packages/py-astropy/package.py @@ -56,6 +56,5 @@ class PyAstropy(Package): depends_on('expat') def install(self, spec, prefix): - python('setup.py', 'build', '--use-system-cfitsio', - '--use-system-expat') - python('setup.py', 'install', '--prefix={0}'.format(prefix)) + setup_py('build', '--use-system-cfitsio', '--use-system-expat') + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-autopep8/package.py b/var/spack/repos/builtin/packages/py-autopep8/package.py index f6c08e2728..6d093f32f6 100644 --- a/var/spack/repos/builtin/packages/py-autopep8/package.py +++ b/var/spack/repos/builtin/packages/py-autopep8/package.py @@ -1,16 +1,53 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## from spack import * class PyAutopep8(Package): - """Automatic pep8 formatter""" + """autopep8 automatically formats Python code to conform to the + PEP 8 style guide.""" + homepage = "https://github.com/hhatto/autopep8" - url = "https://github.com/hhatto/autopep8/archive/ver1.2.2.tar.gz" + url = "https://github.com/hhatto/autopep8/archive/v1.2.4.tar.gz" + version('1.2.4', '0458db85159a9e1b45f3e71ce6c158da') version('1.2.2', 'def3d023fc9dfd1b7113602e965ad8e1') - extends('python') + extends('python', ignore='bin/pep8') + depends_on('python@2.6:2.7,3.2:') + + depends_on('py-pycodestyle@1.5.7:1.7.0', type=nolink) + depends_on('py-setuptools', type='build') - depends_on('py-pep8', type=nolink) + + def url_for_version(self, version): + url = "https://github.com/hhatto/autopep8/archive/{0}{1}.tar.gz" + if version >= Version('1.2.3'): + return url.format('v', version) + else: + return url.format('ver', version) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-basemap/package.py b/var/spack/repos/builtin/packages/py-basemap/package.py index 9c7f6454df..5b0026eda9 100644 --- a/var/spack/repos/builtin/packages/py-basemap/package.py +++ b/var/spack/repos/builtin/packages/py-basemap/package.py @@ -43,4 +43,4 @@ class PyBasemap(Package): def install(self, spec, prefix): env['GEOS_DIR'] = spec['geos'].prefix - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-beautifulsoup4/package.py b/var/spack/repos/builtin/packages/py-beautifulsoup4/package.py index d3a260bd7f..71014b5bdb 100644 --- a/var/spack/repos/builtin/packages/py-beautifulsoup4/package.py +++ b/var/spack/repos/builtin/packages/py-beautifulsoup4/package.py @@ -40,4 +40,4 @@ class PyBeautifulsoup4(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix={0}'.format(prefix)) + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-biopython/package.py b/var/spack/repos/builtin/packages/py-biopython/package.py index c3edf9735b..9e1b693a0d 100644 --- a/var/spack/repos/builtin/packages/py-biopython/package.py +++ b/var/spack/repos/builtin/packages/py-biopython/package.py @@ -41,4 +41,4 @@ class PyBiopython(Package): depends_on('py-numpy', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-blessings/package.py b/var/spack/repos/builtin/packages/py-blessings/package.py index e6fc6aa983..700c0ff4b3 100644 --- a/var/spack/repos/builtin/packages/py-blessings/package.py +++ b/var/spack/repos/builtin/packages/py-blessings/package.py @@ -37,4 +37,4 @@ class PyBlessings(Package): extends("python") def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-bottleneck/package.py b/var/spack/repos/builtin/packages/py-bottleneck/package.py index ad2ee749d3..20d78846bb 100644 --- a/var/spack/repos/builtin/packages/py-bottleneck/package.py +++ b/var/spack/repos/builtin/packages/py-bottleneck/package.py @@ -36,4 +36,4 @@ class PyBottleneck(Package): depends_on('py-numpy', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-cffi/package.py b/var/spack/repos/builtin/packages/py-cffi/package.py index 7c08e51de8..5cd983b343 100644 --- a/var/spack/repos/builtin/packages/py-cffi/package.py +++ b/var/spack/repos/builtin/packages/py-cffi/package.py @@ -49,4 +49,4 @@ class PyCffi(Package): # building the shared library. os.environ['LDSHARED'] = "{0} -shared -pthread".format(spack_cc) - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-configparser/package.py b/var/spack/repos/builtin/packages/py-configparser/package.py new file mode 100644 index 0000000000..1ad4ed619e --- /dev/null +++ b/var/spack/repos/builtin/packages/py-configparser/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyConfigparser(Package): + """This library brings the updated configparser from Python 3.5 to + Python 2.6-3.5.""" + + homepage = "https://pypi.python.org/pypi/configparser" + url = "https://pypi.python.org/packages/source/c/configparser/configparser-3.5.0.tar.gz" + + version('3.5.0', 'cfdd915a5b7a6c09917a64a573140538', + url="https://pypi.python.org/packages/7c/69/c2ce7e91c89dc073eb1aa74c0621c3eefbffe8216b3f9af9d3885265c01c/configparser-3.5.0.tar.gz") + + extends('python') + depends_on('python@2.6:2.7,3.4:') + + depends_on('py-ordereddict', when='^python@2.6:2.6.999', type=nolink) + + depends_on('py-setuptools', type='build') + + def install(self, spec, prefix): + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-coverage/package.py b/var/spack/repos/builtin/packages/py-coverage/package.py index 1a5b6df3d7..8cd8440b7e 100644 --- a/var/spack/repos/builtin/packages/py-coverage/package.py +++ b/var/spack/repos/builtin/packages/py-coverage/package.py @@ -38,4 +38,4 @@ class PyCoverage(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-csvkit/package.py b/var/spack/repos/builtin/packages/py-csvkit/package.py index 5f50e3b6c2..5b0394a138 100644 --- a/var/spack/repos/builtin/packages/py-csvkit/package.py +++ b/var/spack/repos/builtin/packages/py-csvkit/package.py @@ -44,4 +44,4 @@ class PyCsvkit(Package): depends_on('py-openpyxl', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-cython/package.py b/var/spack/repos/builtin/packages/py-cython/package.py index 4b3e1cabe1..e532286081 100644 --- a/var/spack/repos/builtin/packages/py-cython/package.py +++ b/var/spack/repos/builtin/packages/py-cython/package.py @@ -40,4 +40,4 @@ class PyCython(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-dask/package.py b/var/spack/repos/builtin/packages/py-dask/package.py index 4bc2c6fc99..c72046b627 100644 --- a/var/spack/repos/builtin/packages/py-dask/package.py +++ b/var/spack/repos/builtin/packages/py-dask/package.py @@ -37,4 +37,4 @@ class PyDask(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-dateutil/package.py b/var/spack/repos/builtin/packages/py-dateutil/package.py index 40945232c1..f147e2357b 100644 --- a/var/spack/repos/builtin/packages/py-dateutil/package.py +++ b/var/spack/repos/builtin/packages/py-dateutil/package.py @@ -39,4 +39,4 @@ class PyDateutil(Package): depends_on('py-six', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-dbf/package.py b/var/spack/repos/builtin/packages/py-dbf/package.py index 7f83bce75e..eff893cc82 100644 --- a/var/spack/repos/builtin/packages/py-dbf/package.py +++ b/var/spack/repos/builtin/packages/py-dbf/package.py @@ -37,4 +37,4 @@ class PyDbf(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-decorator/package.py b/var/spack/repos/builtin/packages/py-decorator/package.py index 9101b07a0d..30f764edc3 100644 --- a/var/spack/repos/builtin/packages/py-decorator/package.py +++ b/var/spack/repos/builtin/packages/py-decorator/package.py @@ -39,4 +39,4 @@ class PyDecorator(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-emcee/package.py b/var/spack/repos/builtin/packages/py-emcee/package.py index 397f737cb1..2045ec9d59 100644 --- a/var/spack/repos/builtin/packages/py-emcee/package.py +++ b/var/spack/repos/builtin/packages/py-emcee/package.py @@ -38,4 +38,4 @@ class PyEmcee(Package): depends_on('py-numpy', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix={0}'.format(prefix)) + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-enum34/package.py b/var/spack/repos/builtin/packages/py-enum34/package.py new file mode 100644 index 0000000000..2f294bac12 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-enum34/package.py @@ -0,0 +1,45 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyEnum34(Package): + """Python 3.4 Enum backported to 3.3, 3.2, 3.1, 2.7, 2.6, 2.5, and 2.4.""" + + homepage = "https://pypi.python.org/pypi/enum34" + url = "https://pypi.python.org/packages/source/e/enum34/enum34-1.1.6.tar.gz" + + version('1.1.6', '5f13a0841a61f7fc295c514490d120d0', + url="https://pypi.python.org/packages/bf/3e/31d502c25302814a7c2f1d3959d2a3b3f78e509002ba91aea64993936876/enum34-1.1.6.tar.gz") + + extends('python') + depends_on('python@2.4:2.8,3.3:') + + depends_on('py-ordereddict', when='^python@:2.6.999', type=nolink) + + depends_on('py-setuptools', type='build') + + def install(self, spec, prefix): + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-epydoc/package.py b/var/spack/repos/builtin/packages/py-epydoc/package.py index 9d4b93dad4..ed490cb396 100644 --- a/var/spack/repos/builtin/packages/py-epydoc/package.py +++ b/var/spack/repos/builtin/packages/py-epydoc/package.py @@ -36,4 +36,4 @@ class PyEpydoc(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-flake8/package.py b/var/spack/repos/builtin/packages/py-flake8/package.py index 2fabe03d66..8bb36bc02f 100644 --- a/var/spack/repos/builtin/packages/py-flake8/package.py +++ b/var/spack/repos/builtin/packages/py-flake8/package.py @@ -28,13 +28,40 @@ from spack import * class PyFlake8(Package): """Flake8 is a wrapper around PyFlakes, pep8 and Ned Batchelder's McCabe script.""" - homepage = "http://flake8.readthedocs.io/en/latest/" - url = "https://pypi.python.org/packages/source/f/flake8/flake8-2.5.4.tar.gz" - version('2.5.4', 'a4585b3569b95c3f66acb8294a7f06ef') + homepage = "https://github.com/PyCQA/flake8" + url = "https://github.com/PyCQA/flake8/archive/3.0.4.tar.gz" - extends('python') - depends_on('py-setuptools', type='build') + version('3.0.4', 'cf2a7d8c92070f7b62253404ffb54df7') + version('2.5.4', '366dd1de6c300254c830b81e66979f06') + + extends('python', ignore='bin/(pyflakes|pycodestyle)') + depends_on('python@2.7:2.8,3.4:') + + # Most Python packages only require py-setuptools as a build dependency. + # However, py-flake8 requires py-setuptools during runtime as well. + depends_on('py-setuptools', type=nolink) + + # pyflakes >= 0.8.1, != 1.2.0, != 1.2.1, != 1.2.2, < 1.3.0 + depends_on('py-pyflakes@0.8.1:1.1.0,1.2.3:1.2.3', when='@3.0.4', type=nolink) # noqa + # pyflakes >= 0.8.1, < 1.1 + depends_on('py-pyflakes@0.8.1:1.0.0', when='@2.5.4', type=nolink) + + # pycodestyle >= 2.0.0, < 2.1.0 + depends_on('py-pycodestyle@2.0.0:2.0.999', when='@3.0.4', type=nolink) + # pep8 >= 1.5.7, != 1.6.0, != 1.6.1, != 1.6.2 + depends_on('py-pycodestyle@1.5.7,1.7.0:', when='@2.5.4', type=nolink) + + # mccabe >= 0.5.0, < 0.6.0 + depends_on('py-mccabe@0.5.0:0.5.999', when='@3.0.4', type=nolink) + # mccabe >= 0.2.1, < 0.5 + depends_on('py-mccabe@0.2.1:0.4.0', when='@2.5.4', type=nolink) + + depends_on('py-configparser', when='^python@:3.3.999', type=nolink) + depends_on('py-enum34', when='^python@:3.1.999', type=nolink) + + # TODO: Add test dependencies + # depends_on('py-nose', type='test') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-funcsigs/package.py b/var/spack/repos/builtin/packages/py-funcsigs/package.py index c3d37f6b98..b82a37cae9 100644 --- a/var/spack/repos/builtin/packages/py-funcsigs/package.py +++ b/var/spack/repos/builtin/packages/py-funcsigs/package.py @@ -37,4 +37,4 @@ class PyFuncsigs(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-genshi/package.py b/var/spack/repos/builtin/packages/py-genshi/package.py index ea8d26c796..e7eb7bebdd 100644 --- a/var/spack/repos/builtin/packages/py-genshi/package.py +++ b/var/spack/repos/builtin/packages/py-genshi/package.py @@ -39,4 +39,4 @@ class PyGenshi(Package): depends_on("py-setuptools", type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-gnuplot/package.py b/var/spack/repos/builtin/packages/py-gnuplot/package.py index a448a66e51..cc273103f2 100644 --- a/var/spack/repos/builtin/packages/py-gnuplot/package.py +++ b/var/spack/repos/builtin/packages/py-gnuplot/package.py @@ -37,4 +37,4 @@ class PyGnuplot(Package): depends_on('py-numpy', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-h5py/package.py b/var/spack/repos/builtin/packages/py-h5py/package.py index 90a67c51bd..0579787ba2 100644 --- a/var/spack/repos/builtin/packages/py-h5py/package.py +++ b/var/spack/repos/builtin/packages/py-h5py/package.py @@ -56,11 +56,10 @@ class PyH5py(Package): depends_on('py-six', type=nolink) def install(self, spec, prefix): - python('setup.py', 'configure', - '--hdf5={0}'.format(spec['hdf5'].prefix)) + setup_py('configure', '--hdf5={0}'.format(spec['hdf5'].prefix)) if '+mpi' in spec: env['CC'] = spec['mpi'].mpicc - python('setup.py', 'configure', '--mpi') + setup_py('configure', '--mpi') - python('setup.py', 'install', '--prefix={0}'.format(prefix)) + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-iminuit/package.py b/var/spack/repos/builtin/packages/py-iminuit/package.py index d7446c06d4..c58b722e3b 100644 --- a/var/spack/repos/builtin/packages/py-iminuit/package.py +++ b/var/spack/repos/builtin/packages/py-iminuit/package.py @@ -43,4 +43,4 @@ class PyIminuit(Package): depends_on('py-cython', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix={0}'.format(prefix)) + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-ipython/package.py b/var/spack/repos/builtin/packages/py-ipython/package.py index ac3291e21e..d7ee2e3c95 100644 --- a/var/spack/repos/builtin/packages/py-ipython/package.py +++ b/var/spack/repos/builtin/packages/py-ipython/package.py @@ -39,4 +39,4 @@ class PyIpython(Package): depends_on('py-setuptools', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-jdcal/package.py b/var/spack/repos/builtin/packages/py-jdcal/package.py index 32acf75131..60ee91c9b6 100644 --- a/var/spack/repos/builtin/packages/py-jdcal/package.py +++ b/var/spack/repos/builtin/packages/py-jdcal/package.py @@ -36,4 +36,4 @@ class PyJdcal(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-lockfile/package.py b/var/spack/repos/builtin/packages/py-lockfile/package.py index b873625bdb..856276ec89 100644 --- a/var/spack/repos/builtin/packages/py-lockfile/package.py +++ b/var/spack/repos/builtin/packages/py-lockfile/package.py @@ -45,4 +45,4 @@ class PyLockfile(Package): depends_on("py-setuptools", type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-logilab-common/package.py b/var/spack/repos/builtin/packages/py-logilab-common/package.py index ac1b933e43..e66cdc8479 100644 --- a/var/spack/repos/builtin/packages/py-logilab-common/package.py +++ b/var/spack/repos/builtin/packages/py-logilab-common/package.py @@ -38,4 +38,4 @@ class PyLogilabCommon(Package): depends_on("py-six", type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-mako/package.py b/var/spack/repos/builtin/packages/py-mako/package.py index 18a8dc0e68..ed4ccc7364 100644 --- a/var/spack/repos/builtin/packages/py-mako/package.py +++ b/var/spack/repos/builtin/packages/py-mako/package.py @@ -38,4 +38,4 @@ class PyMako(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-mccabe/package.py b/var/spack/repos/builtin/packages/py-mccabe/package.py new file mode 100644 index 0000000000..ec913acb16 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-mccabe/package.py @@ -0,0 +1,53 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyMccabe(Package): + """Ned's script to check McCabe complexity.""" + + homepage = "https://github.com/PyCQA/mccabe" + url = "https://github.com/PyCQA/mccabe/archive/0.5.2.tar.gz" + + version('0.5.2', '3cdf2d7faa1464b18905fe9a7063a632') + version('0.5.1', '864b364829156701bec797712be8ece0') + version('0.5.0', '71c0ce5e5c4676753525154f6c5d3af8') + version('0.4.0', '9cf5712e5f1785aaa27273a4328babe4') + version('0.3.1', '45c48c0978e6fc1f31fedcb918178abb') + version('0.3', 'c583f58ea28be12842c001473d77504d') + version('0.2.1', 'fcba311ebd999f48359a8ab28da94b30') + version('0.2', '36d4808c37e187dbb1fe2373a0ac6645') + version('0.1', '3c9e8e72612a9c01d865630cc569150a') + + extends('python') + depends_on('python@2.7:2.8,3.3:') + + depends_on('py-setuptools', type='build') + + # TODO: Add test dependencies + # depends_on('py-pytest', type='test') + + def install(self, spec, prefix): + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-mistune/package.py b/var/spack/repos/builtin/packages/py-mistune/package.py index 399c10005e..2daee1ed9a 100644 --- a/var/spack/repos/builtin/packages/py-mistune/package.py +++ b/var/spack/repos/builtin/packages/py-mistune/package.py @@ -43,4 +43,4 @@ class PyMistune(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-mock/package.py b/var/spack/repos/builtin/packages/py-mock/package.py index 2c70535f19..d397b72329 100644 --- a/var/spack/repos/builtin/packages/py-mock/package.py +++ b/var/spack/repos/builtin/packages/py-mock/package.py @@ -40,4 +40,4 @@ class PyMock(Package): depends_on('py-setuptools@17.1:', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-mpi4py/package.py b/var/spack/repos/builtin/packages/py-mpi4py/package.py index 1f0e52804e..11b1584397 100644 --- a/var/spack/repos/builtin/packages/py-mpi4py/package.py +++ b/var/spack/repos/builtin/packages/py-mpi4py/package.py @@ -43,4 +43,4 @@ class PyMpi4py(Package): depends_on('mpi') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-mpmath/package.py b/var/spack/repos/builtin/packages/py-mpmath/package.py index e5bae34694..846852aeb5 100644 --- a/var/spack/repos/builtin/packages/py-mpmath/package.py +++ b/var/spack/repos/builtin/packages/py-mpmath/package.py @@ -35,4 +35,4 @@ class PyMpmath(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-mx/package.py b/var/spack/repos/builtin/packages/py-mx/package.py index f5631916f6..e72b281665 100644 --- a/var/spack/repos/builtin/packages/py-mx/package.py +++ b/var/spack/repos/builtin/packages/py-mx/package.py @@ -40,4 +40,4 @@ class PyMx(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-mysqldb1/package.py b/var/spack/repos/builtin/packages/py-mysqldb1/package.py index 693fda6dbb..14534a57ca 100644 --- a/var/spack/repos/builtin/packages/py-mysqldb1/package.py +++ b/var/spack/repos/builtin/packages/py-mysqldb1/package.py @@ -36,4 +36,4 @@ class PyMysqldb1(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-nestle/package.py b/var/spack/repos/builtin/packages/py-nestle/package.py index 81f9fe4d09..03096586b9 100644 --- a/var/spack/repos/builtin/packages/py-nestle/package.py +++ b/var/spack/repos/builtin/packages/py-nestle/package.py @@ -41,4 +41,4 @@ class PyNestle(Package): depends_on('py-scipy', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix={0}'.format(prefix)) + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-netcdf/package.py b/var/spack/repos/builtin/packages/py-netcdf/package.py index e4f67d75a6..497f81f86d 100644 --- a/var/spack/repos/builtin/packages/py-netcdf/package.py +++ b/var/spack/repos/builtin/packages/py-netcdf/package.py @@ -38,4 +38,4 @@ class PyNetcdf(Package): depends_on('netcdf') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-networkx/package.py b/var/spack/repos/builtin/packages/py-networkx/package.py index 79ad420f8f..aaeaac9674 100644 --- a/var/spack/repos/builtin/packages/py-networkx/package.py +++ b/var/spack/repos/builtin/packages/py-networkx/package.py @@ -39,4 +39,4 @@ class PyNetworkx(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-nose/package.py b/var/spack/repos/builtin/packages/py-nose/package.py index eb3dd77219..f1872c85b4 100644 --- a/var/spack/repos/builtin/packages/py-nose/package.py +++ b/var/spack/repos/builtin/packages/py-nose/package.py @@ -40,4 +40,4 @@ class PyNose(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-numexpr/package.py b/var/spack/repos/builtin/packages/py-numexpr/package.py index b3b2e1d47d..51b4ef2e92 100644 --- a/var/spack/repos/builtin/packages/py-numexpr/package.py +++ b/var/spack/repos/builtin/packages/py-numexpr/package.py @@ -37,4 +37,4 @@ class PyNumexpr(Package): depends_on('py-numpy', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-numpy/package.py b/var/spack/repos/builtin/packages/py-numpy/package.py index 0d68a892f2..8cb2331637 100644 --- a/var/spack/repos/builtin/packages/py-numpy/package.py +++ b/var/spack/repos/builtin/packages/py-numpy/package.py @@ -66,21 +66,21 @@ class PyNumpy(Package): 'numpy/core/include') def install(self, spec, prefix): - libraries = [] - library_dirs = [] + # for build notes see http://www.scipy.org/scipylib/building/linux.html + lapackblas = LibraryList('') + if '+lapack' in spec: + lapackblas += spec['lapack'].lapack_libs if '+blas' in spec: - libraries.append('blas') - library_dirs.append(spec['blas'].prefix.lib) - if '+lapack' in spec: - libraries.append('lapack') - library_dirs.append(spec['lapack'].prefix.lib) + lapackblas += spec['blas'].blas_libs if '+blas' in spec or '+lapack' in spec: with open('site.cfg', 'w') as f: f.write('[DEFAULT]\n') - f.write('libraries=%s\n' % ','.join(libraries)) - f.write('library_dirs=%s\n' % ':'.join(library_dirs)) - f.write('rpath=%s\n' % ':'.join(library_dirs)) + f.write('libraries=%s\n' % ','.join(lapackblas.names)) + f.write('library_dirs=%s\n' % ':'.join(lapackblas.directories)) + if not ((platform.system() == "Darwin") and + (platform.mac_ver()[0] == '10.12')): + f.write('rpath=%s\n' % ':'.join(lapackblas.directories)) setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-openpyxl/package.py b/var/spack/repos/builtin/packages/py-openpyxl/package.py index fa32cb879f..94949076ef 100644 --- a/var/spack/repos/builtin/packages/py-openpyxl/package.py +++ b/var/spack/repos/builtin/packages/py-openpyxl/package.py @@ -39,4 +39,4 @@ class PyOpenpyxl(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-ordereddict/package.py b/var/spack/repos/builtin/packages/py-ordereddict/package.py new file mode 100644 index 0000000000..6e038b789c --- /dev/null +++ b/var/spack/repos/builtin/packages/py-ordereddict/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyOrdereddict(Package): + """A drop-in substitute for Py2.7's new collections. + OrderedDict that works in Python 2.4-2.6.""" + + homepage = "https://pypi.python.org/pypi/ordereddict" + url = "https://pypi.python.org/packages/source/o/ordereddict/ordereddict-1.1.tar.gz" + + version('1.1', 'a0ed854ee442051b249bfad0f638bbec') + + extends('python') + depends_on('python@2.4:2.6.999') + + def install(self, spec, prefix): + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-pandas/package.py b/var/spack/repos/builtin/packages/py-pandas/package.py index 37234ae652..ae797cee40 100644 --- a/var/spack/repos/builtin/packages/py-pandas/package.py +++ b/var/spack/repos/builtin/packages/py-pandas/package.py @@ -51,4 +51,4 @@ class PyPandas(Package): depends_on('py-bottleneck', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pbr/package.py b/var/spack/repos/builtin/packages/py-pbr/package.py index a0cfe0e5a5..0251e436b1 100644 --- a/var/spack/repos/builtin/packages/py-pbr/package.py +++ b/var/spack/repos/builtin/packages/py-pbr/package.py @@ -38,4 +38,4 @@ class PyPbr(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pep8/package.py b/var/spack/repos/builtin/packages/py-pep8/package.py deleted file mode 100644 index 87d1da9ab0..0000000000 --- a/var/spack/repos/builtin/packages/py-pep8/package.py +++ /dev/null @@ -1,15 +0,0 @@ -from spack import * - - -class PyPep8(Package): - """python pep8 format checker""" - homepage = "https://github.com/PyCQA/pycodestyle" - url = "https://github.com/PyCQA/pycodestyle/archive/1.7.0.tar.gz" - - version('1.7.0', '31070a3a6391928893cbf5fa523eb8d9') - - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-periodictable/package.py b/var/spack/repos/builtin/packages/py-periodictable/package.py index 51d9cc2046..4a5b015e60 100644 --- a/var/spack/repos/builtin/packages/py-periodictable/package.py +++ b/var/spack/repos/builtin/packages/py-periodictable/package.py @@ -39,4 +39,4 @@ class PyPeriodictable(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pexpect/package.py b/var/spack/repos/builtin/packages/py-pexpect/package.py index 8a99c0473b..9e43e4526e 100644 --- a/var/spack/repos/builtin/packages/py-pexpect/package.py +++ b/var/spack/repos/builtin/packages/py-pexpect/package.py @@ -35,4 +35,4 @@ class PyPexpect(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-phonopy/package.py b/var/spack/repos/builtin/packages/py-phonopy/package.py index d5b3313a98..a4ad03f34d 100644 --- a/var/spack/repos/builtin/packages/py-phonopy/package.py +++ b/var/spack/repos/builtin/packages/py-phonopy/package.py @@ -40,4 +40,4 @@ class PyPhonopy(Package): depends_on('py-pyyaml', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--home=%s' % prefix) + setup_py('install', '--home=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pil/package.py b/var/spack/repos/builtin/packages/py-pil/package.py index 29a86d1e85..f5d684962d 100644 --- a/var/spack/repos/builtin/packages/py-pil/package.py +++ b/var/spack/repos/builtin/packages/py-pil/package.py @@ -43,4 +43,4 @@ class PyPil(Package): depends_on('python@1.5.2:2.8') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pillow/package.py b/var/spack/repos/builtin/packages/py-pillow/package.py index 211e3b4199..3125a822b4 100644 --- a/var/spack/repos/builtin/packages/py-pillow/package.py +++ b/var/spack/repos/builtin/packages/py-pillow/package.py @@ -129,5 +129,5 @@ class PyPillow(Package): variants = ['jpeg', 'zlib', 'tiff', 'freetype', 'lcms', 'jpeg2000'] build_args = list(map(variant_to_flag, variants)) - python('setup.py', 'build_ext', *build_args) - python('setup.py', 'install', '--prefix={0}'.format(prefix)) + setup_py('build_ext', *build_args) + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-ply/package.py b/var/spack/repos/builtin/packages/py-ply/package.py index 47cd3b5dc8..d249de64fa 100644 --- a/var/spack/repos/builtin/packages/py-ply/package.py +++ b/var/spack/repos/builtin/packages/py-ply/package.py @@ -35,4 +35,4 @@ class PyPly(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pmw/package.py b/var/spack/repos/builtin/packages/py-pmw/package.py index e0a332a6bf..5173864f62 100644 --- a/var/spack/repos/builtin/packages/py-pmw/package.py +++ b/var/spack/repos/builtin/packages/py-pmw/package.py @@ -36,4 +36,4 @@ class PyPmw(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-prettytable/package.py b/var/spack/repos/builtin/packages/py-prettytable/package.py index fa1c17ae8c..55a323a0d6 100644 --- a/var/spack/repos/builtin/packages/py-prettytable/package.py +++ b/var/spack/repos/builtin/packages/py-prettytable/package.py @@ -40,4 +40,4 @@ class PyPrettytable(Package): depends_on("py-setuptools", type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-protobuf/package.py b/var/spack/repos/builtin/packages/py-protobuf/package.py index dd2b5651de..d1186775bb 100644 --- a/var/spack/repos/builtin/packages/py-protobuf/package.py +++ b/var/spack/repos/builtin/packages/py-protobuf/package.py @@ -47,4 +47,4 @@ class PyProtobuf(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix={0}'.format(prefix)) + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-py2neo/package.py b/var/spack/repos/builtin/packages/py-py2neo/package.py index 97632493af..aed0859021 100644 --- a/var/spack/repos/builtin/packages/py-py2neo/package.py +++ b/var/spack/repos/builtin/packages/py-py2neo/package.py @@ -43,4 +43,4 @@ class PyPy2neo(Package): extends("python") def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pychecker/package.py b/var/spack/repos/builtin/packages/py-pychecker/package.py index e81c3dbc9b..b1f8aad33f 100644 --- a/var/spack/repos/builtin/packages/py-pychecker/package.py +++ b/var/spack/repos/builtin/packages/py-pychecker/package.py @@ -35,4 +35,4 @@ class PyPychecker(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pycodestyle/package.py b/var/spack/repos/builtin/packages/py-pycodestyle/package.py new file mode 100644 index 0000000000..964822aac9 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-pycodestyle/package.py @@ -0,0 +1,52 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyPycodestyle(Package): + """pycodestyle is a tool to check your Python code against some of the + style conventions in PEP 8. Note: formerly called pep8.""" + + homepage = "https://github.com/PyCQA/pycodestyle" + url = "https://github.com/PyCQA/pycodestyle/archive/2.0.0.tar.gz" + + version('2.0.0', '5c3e90001f538bf3b7896d60e92eb6f6') + version('1.7.0', '31070a3a6391928893cbf5fa523eb8d9') + version('1.6.2', '8df18246d82ddd3d19ffe7518f983955') + version('1.6.1', '9d59bdc7c60f46f7cee86c732e28aa1a') + version('1.6', '340fa7e39bb44fb08db6eddf7cdc880a') + version('1.5.7', '6d0f5fc7d95755999bc9275cad5cbf3e') + version('1.5.6', 'c5c30e3d267b48bf3dfe7568e803a813') + version('1.5.5', 'cfa12df9b86b3a1dfb13aced1927e12f') + version('1.5.4', '3977a760829652543544074c684610ee') + + extends('python') + + # Most Python packages only require py-setuptools as a build dependency. + # However, py-pycodestyle requires py-setuptools during runtime as well. + depends_on('py-setuptools', type=nolink) + + def install(self, spec, prefix): + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-pycparser/package.py b/var/spack/repos/builtin/packages/py-pycparser/package.py index ef1b772ffc..e7b91f4495 100644 --- a/var/spack/repos/builtin/packages/py-pycparser/package.py +++ b/var/spack/repos/builtin/packages/py-pycparser/package.py @@ -36,4 +36,4 @@ class PyPycparser(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pydatalog/package.py b/var/spack/repos/builtin/packages/py-pydatalog/package.py index da157d3679..b2203ae04c 100644 --- a/var/spack/repos/builtin/packages/py-pydatalog/package.py +++ b/var/spack/repos/builtin/packages/py-pydatalog/package.py @@ -35,4 +35,4 @@ class PyPydatalog(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pyelftools/package.py b/var/spack/repos/builtin/packages/py-pyelftools/package.py index bf781daf83..96a5645541 100644 --- a/var/spack/repos/builtin/packages/py-pyelftools/package.py +++ b/var/spack/repos/builtin/packages/py-pyelftools/package.py @@ -36,4 +36,4 @@ class PyPyelftools(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pyflakes/package.py b/var/spack/repos/builtin/packages/py-pyflakes/package.py new file mode 100644 index 0000000000..50bc8ab462 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-pyflakes/package.py @@ -0,0 +1,52 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyPyflakes(Package): + """A simple program which checks Python source files for errors..""" + + homepage = "https://github.com/PyCQA/pyflakes" + url = "https://github.com/PyCQA/pyflakes/archive/1.3.0.tar.gz" + + version('1.3.0', 'a76173deb7a84fe860c0b60e2fbcdfe2') + version('1.2.3', '2ac2e148a5c46b6bb06c4785be76f7cc') + version('1.2.2', 'fe759b9381a6500e67a2ddbbeb5161a4') + version('1.2.1', '444a06b256e0a70e41c11698b7190e84') + version('1.2.0', '5d1c87bf09696c4c35dc3103f2a1185c') + version('1.1.0', '4e18bf78c0455ebcd41e5d6104392c88') + version('1.0.0', 'e2ea22a825c5100f12e54b71771cde71') + version('0.9.2', 'd02d5f68e944085fd6ec163a34737a96') + version('0.9.1', '8108d2248e93ca6a315fa2dd31ee9bb1') + version('0.9.0', '43c2bcee88606bde55dbf25a253ef886') + + extends('python') + + # Most Python packages only require py-setuptools as a build dependency. + # However, py-pyflakes requires py-setuptools during runtime as well. + depends_on('py-setuptools', type=nolink) + + def install(self, spec, prefix): + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-pylint/package.py b/var/spack/repos/builtin/packages/py-pylint/package.py index c505d44530..10f60f0ab9 100644 --- a/var/spack/repos/builtin/packages/py-pylint/package.py +++ b/var/spack/repos/builtin/packages/py-pylint/package.py @@ -38,4 +38,4 @@ class PyPylint(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pypar/package.py b/var/spack/repos/builtin/packages/py-pypar/package.py index 6fef71304c..90d1f957b6 100644 --- a/var/spack/repos/builtin/packages/py-pypar/package.py +++ b/var/spack/repos/builtin/packages/py-pypar/package.py @@ -39,4 +39,4 @@ class PyPypar(Package): def install(self, spec, prefix): with working_dir('source'): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pyparsing/package.py b/var/spack/repos/builtin/packages/py-pyparsing/package.py index 67d255b02d..c3b4432d33 100644 --- a/var/spack/repos/builtin/packages/py-pyparsing/package.py +++ b/var/spack/repos/builtin/packages/py-pyparsing/package.py @@ -35,4 +35,4 @@ class PyPyparsing(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pytables/package.py b/var/spack/repos/builtin/packages/py-pytables/package.py index f87e74211f..289d76242b 100644 --- a/var/spack/repos/builtin/packages/py-pytables/package.py +++ b/var/spack/repos/builtin/packages/py-pytables/package.py @@ -42,4 +42,4 @@ class PyPytables(Package): def install(self, spec, prefix): env["HDF5_DIR"] = spec['hdf5'].prefix - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-python-daemon/package.py b/var/spack/repos/builtin/packages/py-python-daemon/package.py index a30dc00ba4..c696b7490b 100644 --- a/var/spack/repos/builtin/packages/py-python-daemon/package.py +++ b/var/spack/repos/builtin/packages/py-python-daemon/package.py @@ -47,4 +47,4 @@ class PyPythonDaemon(Package): depends_on("py-lockfile", type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pyyaml/package.py b/var/spack/repos/builtin/packages/py-pyyaml/package.py index 8da391fac1..d760fcaae9 100644 --- a/var/spack/repos/builtin/packages/py-pyyaml/package.py +++ b/var/spack/repos/builtin/packages/py-pyyaml/package.py @@ -35,4 +35,4 @@ class PyPyyaml(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-restview/package.py b/var/spack/repos/builtin/packages/py-restview/package.py index 047214c58e..9b0bd437c0 100644 --- a/var/spack/repos/builtin/packages/py-restview/package.py +++ b/var/spack/repos/builtin/packages/py-restview/package.py @@ -38,4 +38,4 @@ class PyRestview(Package): depends_on('py-pygments', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix={0}'.format(prefix)) + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-rpy2/package.py b/var/spack/repos/builtin/packages/py-rpy2/package.py index f86d813766..9db55e949b 100644 --- a/var/spack/repos/builtin/packages/py-rpy2/package.py +++ b/var/spack/repos/builtin/packages/py-rpy2/package.py @@ -44,4 +44,4 @@ class PyRpy2(Package): depends_on('R') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-scientificpython/package.py b/var/spack/repos/builtin/packages/py-scientificpython/package.py index e2273dc164..6e8b9d38c1 100644 --- a/var/spack/repos/builtin/packages/py-scientificpython/package.py +++ b/var/spack/repos/builtin/packages/py-scientificpython/package.py @@ -38,4 +38,4 @@ class PyScientificpython(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-scikit-image/package.py b/var/spack/repos/builtin/packages/py-scikit-image/package.py index fbeb5c95ca..124d2ec4b7 100644 --- a/var/spack/repos/builtin/packages/py-scikit-image/package.py +++ b/var/spack/repos/builtin/packages/py-scikit-image/package.py @@ -45,4 +45,4 @@ class PyScikitImage(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-scikit-learn/package.py b/var/spack/repos/builtin/packages/py-scikit-learn/package.py index 3cd7ea74f3..09318a6c56 100644 --- a/var/spack/repos/builtin/packages/py-scikit-learn/package.py +++ b/var/spack/repos/builtin/packages/py-scikit-learn/package.py @@ -41,4 +41,4 @@ class PyScikitLearn(Package): depends_on('py-scipy', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-scipy/package.py b/var/spack/repos/builtin/packages/py-scipy/package.py index abb843f8ee..71bf83c3f0 100644 --- a/var/spack/repos/builtin/packages/py-scipy/package.py +++ b/var/spack/repos/builtin/packages/py-scipy/package.py @@ -45,15 +45,10 @@ class PyScipy(Package): # Known not to work with 2.23, 2.25 depends_on('binutils@2.26:', type='build') depends_on('py-numpy@1.7.1:+blas+lapack', type=nolink) + depends_on('blas') + depends_on('lapack') def install(self, spec, prefix): - if 'atlas' in spec: - # libatlas.so actually isn't always installed, but this - # seems to make the build autodetect things correctly. - env['ATLAS'] = join_path( - spec['atlas'].prefix.lib, 'libatlas.' + dso_suffix) - else: - env['BLAS'] = spec['blas'].blas_libs.joined() - env['LAPACK'] = spec['lapack'].lapack_libs.joined() - + # NOTE: scipy picks up Blas/Lapack from numpy, see + # http://www.scipy.org/scipylib/building/linux.html#step-4-build-numpy-1-5-0 setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-shiboken/package.py b/var/spack/repos/builtin/packages/py-shiboken/package.py index 0713f26ebc..c6c23acd33 100644 --- a/var/spack/repos/builtin/packages/py-shiboken/package.py +++ b/var/spack/repos/builtin/packages/py-shiboken/package.py @@ -64,6 +64,4 @@ class PyShiboken(Package): 'shiboken_postinstall.py') def install(self, spec, prefix): - python('setup.py', 'install', - '--prefix=%s' % prefix, - '--jobs=%s' % make_jobs) + setup_py('install', '--prefix=%s' % prefix, '--jobs=%s' % make_jobs) diff --git a/var/spack/repos/builtin/packages/py-sncosmo/package.py b/var/spack/repos/builtin/packages/py-sncosmo/package.py index feb3856e8b..d5e32fd5e2 100644 --- a/var/spack/repos/builtin/packages/py-sncosmo/package.py +++ b/var/spack/repos/builtin/packages/py-sncosmo/package.py @@ -48,4 +48,4 @@ class PySncosmo(Package): depends_on('py-nestle', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix={0}'.format(prefix)) + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-storm/package.py b/var/spack/repos/builtin/packages/py-storm/package.py index 0e972480f3..74fb2add0d 100644 --- a/var/spack/repos/builtin/packages/py-storm/package.py +++ b/var/spack/repos/builtin/packages/py-storm/package.py @@ -37,4 +37,4 @@ class PyStorm(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-symengine/package.py b/var/spack/repos/builtin/packages/py-symengine/package.py new file mode 100644 index 0000000000..7f7cd84a77 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-symengine/package.py @@ -0,0 +1,47 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PySymengine(Package): + """Python wrappers for SymEngine, a symbolic manipulation library.""" + + homepage = "https://github.com/symengine/symengine.py" + url = "https://github.com/symengine/symengine.py/archive/v0.2.0.tar.gz" + + version('0.2.0', 'e1d114fa12be4c8c7e9f24007e07718c') + version('develop', git='https://github.com/symengine/symengine.py.git') + + # Build dependencies + extends('python') + depends_on('python@2.7:2.8,3.3:') + depends_on('py-setuptools', type='build') + depends_on('py-cython@0.19.1:') + depends_on('cmake@2.8.7:', type='build') + depends_on('symengine@0.2.0:') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s --symengine-dir=%s' % + (prefix, spec['symengine'].prefix)) diff --git a/var/spack/repos/builtin/packages/py-sympy/package.py b/var/spack/repos/builtin/packages/py-sympy/package.py index 3d8b86ac4d..7d1b016263 100644 --- a/var/spack/repos/builtin/packages/py-sympy/package.py +++ b/var/spack/repos/builtin/packages/py-sympy/package.py @@ -37,4 +37,4 @@ class PySympy(Package): depends_on('py-mpmath', when='@1.0:') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-tappy/package.py b/var/spack/repos/builtin/packages/py-tappy/package.py index 03e9528ad7..c195d08fd9 100644 --- a/var/spack/repos/builtin/packages/py-tappy/package.py +++ b/var/spack/repos/builtin/packages/py-tappy/package.py @@ -37,4 +37,4 @@ class PyTappy(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-tuiview/package.py b/var/spack/repos/builtin/packages/py-tuiview/package.py index 5caf3ff143..e20de3ff79 100644 --- a/var/spack/repos/builtin/packages/py-tuiview/package.py +++ b/var/spack/repos/builtin/packages/py-tuiview/package.py @@ -41,4 +41,4 @@ class PyTuiview(Package): depends_on("gdal") def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-twisted/package.py b/var/spack/repos/builtin/packages/py-twisted/package.py index edf1e7b0d7..80023c2123 100644 --- a/var/spack/repos/builtin/packages/py-twisted/package.py +++ b/var/spack/repos/builtin/packages/py-twisted/package.py @@ -38,4 +38,4 @@ class PyTwisted(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-unittest2/package.py b/var/spack/repos/builtin/packages/py-unittest2/package.py index 174ab0ca5f..ddd50a37d4 100644 --- a/var/spack/repos/builtin/packages/py-unittest2/package.py +++ b/var/spack/repos/builtin/packages/py-unittest2/package.py @@ -38,4 +38,4 @@ class PyUnittest2(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-unittest2py3k/package.py b/var/spack/repos/builtin/packages/py-unittest2py3k/package.py index 95e6dcbff0..4aee545d74 100644 --- a/var/spack/repos/builtin/packages/py-unittest2py3k/package.py +++ b/var/spack/repos/builtin/packages/py-unittest2py3k/package.py @@ -39,4 +39,4 @@ class PyUnittest2py3k(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-urwid/package.py b/var/spack/repos/builtin/packages/py-urwid/package.py index 943fb250f6..61dec3f1cd 100644 --- a/var/spack/repos/builtin/packages/py-urwid/package.py +++ b/var/spack/repos/builtin/packages/py-urwid/package.py @@ -37,4 +37,4 @@ class PyUrwid(Package): extends("python") def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-virtualenv/package.py b/var/spack/repos/builtin/packages/py-virtualenv/package.py index 0ed567df95..f373067144 100644 --- a/var/spack/repos/builtin/packages/py-virtualenv/package.py +++ b/var/spack/repos/builtin/packages/py-virtualenv/package.py @@ -38,4 +38,4 @@ class PyVirtualenv(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-wcsaxes/package.py b/var/spack/repos/builtin/packages/py-wcsaxes/package.py index 9588b879fa..ddc10d3e22 100644 --- a/var/spack/repos/builtin/packages/py-wcsaxes/package.py +++ b/var/spack/repos/builtin/packages/py-wcsaxes/package.py @@ -40,4 +40,4 @@ class PyWcsaxes(Package): depends_on('py-astropy', type=nolink) def install(self, spec, prefix): - python('setup.py', 'install', '--prefix={0}'.format(prefix)) + setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-wheel/package.py b/var/spack/repos/builtin/packages/py-wheel/package.py index f0ad340835..ce495bf6d0 100644 --- a/var/spack/repos/builtin/packages/py-wheel/package.py +++ b/var/spack/repos/builtin/packages/py-wheel/package.py @@ -37,4 +37,4 @@ class PyWheel(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-xlrd/package.py b/var/spack/repos/builtin/packages/py-xlrd/package.py index 81c3c928c0..9638b8a36b 100644 --- a/var/spack/repos/builtin/packages/py-xlrd/package.py +++ b/var/spack/repos/builtin/packages/py-xlrd/package.py @@ -37,4 +37,4 @@ class PyXlrd(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-yapf/package.py b/var/spack/repos/builtin/packages/py-yapf/package.py index bc26b82b07..eab4d54abc 100644 --- a/var/spack/repos/builtin/packages/py-yapf/package.py +++ b/var/spack/repos/builtin/packages/py-yapf/package.py @@ -37,4 +37,4 @@ class PyYapf(Package): depends_on('py-setuptools', type='build') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/scons/package.py b/var/spack/repos/builtin/packages/scons/package.py index 2c32bde4a1..d20e529384 100644 --- a/var/spack/repos/builtin/packages/scons/package.py +++ b/var/spack/repos/builtin/packages/scons/package.py @@ -35,4 +35,4 @@ class Scons(Package): extends('python') def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s' % prefix) + setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/sqlite/package.py b/var/spack/repos/builtin/packages/sqlite/package.py index 513f8ec6d4..78c2e14b34 100644 --- a/var/spack/repos/builtin/packages/sqlite/package.py +++ b/var/spack/repos/builtin/packages/sqlite/package.py @@ -23,6 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * +from spack import architecture class Sqlite(Package): @@ -35,7 +36,15 @@ class Sqlite(Package): version('3.8.5', '0544ef6d7afd8ca797935ccc2685a9ed', url='http://www.sqlite.org/2014/sqlite-autoconf-3080500.tar.gz') + def get_arch(self): + arch = architecture.Arch() + arch.platform = architecture.platform() + return str(arch.platform.target('default_target')) + def install(self, spec, prefix): - configure("--prefix=" + prefix) + config = ["--prefix=" + prefix] + if self.get_arch() == 'ppc64le': + config.append("--build=powerpc64le-redhat-linux-gnu") + configure(*config) make() make("install") diff --git a/var/spack/repos/builtin/packages/symengine/package.py b/var/spack/repos/builtin/packages/symengine/package.py new file mode 100644 index 0000000000..f3fc13474c --- /dev/null +++ b/var/spack/repos/builtin/packages/symengine/package.py @@ -0,0 +1,113 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Symengine(Package): + """SymEngine is a fast symbolic manipulation library, written in C++.""" + + homepage = "https://github.com/symengine/symengine" + url = "https://github.com/symengine/symengine/archive/v0.2.0.tar.gz" + + version('0.2.0', '45401561add36a13c1f0b0c5f8d7422d') + version('0.1.0', '41ad7daed61fc5a77c285eb6c7303425') + version('develop', git='https://github.com/symengine/symengine.git') + + variant('flint', default=True, + description='Compile with Flint integer library') + variant('mpc', default=True, + description='Compile with MPC library') + variant('mpfr', default=True, + description='Compile with MPFR library') + variant('piranha', default=False, + description='Compile with Piranha integer library') + variant('thread_safe', default=True, + description='Enable thread safety option') + variant('openmp', default=False, + description='Enable OpenMP support') + variant('shared', default=True, + description='Enables the build of shared libraries') + + # Build dependencies + depends_on('cmake', type='build') + + # Other dependencies + depends_on('gmp') # mpir is a drop-in replacement for this + depends_on('mpc', when='+mpc') # Could also be built against mpir + depends_on('mpfr', when='+mpfr') # Could also be built against mpir + depends_on('flint', when='+flint') # Could also be built against mpir + depends_on('piranha', when='+piranha~flint') # Could also be built against mpir # NOQA + + def install(self, spec, prefix): + options = [] + options.extend(std_cmake_args) + + # CMAKE_BUILD_TYPE should be Debug | Release + for word in options[:]: + if word.startswith('-DCMAKE_BUILD_TYPE'): + options.remove(word) + + # See https://github.com/symengine/symengine/blob/master/README.md + # for build options + options.extend([ + '-DCMAKE_BUILD_TYPE=Release', + '-DWITH_SYMENGINE_RCP:BOOL=ON', + '-DWITH_SYMENGINE_THREAD_SAFE:BOOL=%s' % ( + 'ON' if ('+thread_safe' or '+openmp') in spec else 'OFF'), + '-DBUILD_TESTS:BOOL=ON', + '-DBUILD_BENCHMARKS:BOOL=ON', + '-DWITH_MPC:BOOL=%s' % ( + 'ON' if '+mpc' in spec else 'OFF'), + '-DWITH_MPFR:BOOL=%s' % ( + 'ON' if '+mpfr' in spec else 'OFF'), + '-DINTEGER_CLASS:STRING=gmp', + '-DWITH_OPENMP:BOOL=%s' % ( + 'ON' if '+openmp' in spec else 'OFF'), + '-DBUILD_SHARED_LIBS:BOOL=%s' % ( + 'ON' if '+shared' in spec else 'OFF'), + ]) + + if '+flint' in spec: + options.extend([ + '-DWITH_FLINT:BOOL=ON', + '-DINTEGER_CLASS:STRING=flint' + ]) + elif '+piranha' in spec: + options.extend([ + '-DWITH_PIRANHA:BOOL=ON', + '-DINTEGER_CLASS:STRING=piranha' + ]) + else: + options.extend([ + '-DINTEGER_CLASS:STRING=gmp' + ]) + + with working_dir('spack-build', create=True): + cmake('..', *options) + + make() + make('install') + if self.run_tests: + ctest() diff --git a/var/spack/repos/builtin/packages/tethex/package.py b/var/spack/repos/builtin/packages/tethex/package.py new file mode 100644 index 0000000000..624942498e --- /dev/null +++ b/var/spack/repos/builtin/packages/tethex/package.py @@ -0,0 +1,49 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Tethex(Package): + """Tethex is designed to convert triangular (in 2D) or tetrahedral (in 3D) + Gmsh's mesh to quadrilateral or hexahedral one respectively. These meshes + can be used in software packages working with hexahedrals only - for + example, deal.II. + """ + + homepage = "https://github.com/martemyev/tethex" + url = "https://github.com/martemyev/tethex/archive/v0.0.7.tar.gz" + + version('0.0.7', '6c9e4a18a6637deb4400c6d77ec03184') + version('develop', git='https://github.com/martemyev/tethex.git') + + depends_on('cmake', type='build') + + def install(self, spec, prefix): + cmake('.') + make() + + # install by hand + mkdirp(prefix.bin) + install('tethex', prefix.bin) diff --git a/var/spack/repos/builtin/packages/trilinos/package.py b/var/spack/repos/builtin/packages/trilinos/package.py index 203e1502d6..4c7a94ce3f 100644 --- a/var/spack/repos/builtin/packages/trilinos/package.py +++ b/var/spack/repos/builtin/packages/trilinos/package.py @@ -149,10 +149,10 @@ class Trilinos(Package): '-DMPI_BASE_DIR:PATH=%s' % spec['mpi'].prefix, '-DTPL_ENABLE_BLAS=ON', '-DBLAS_LIBRARY_NAMES=%s' % ';'.join(blas.names), - '-DBLAS_LIBRARY_DIRS=%s' % spec['blas'].prefix.lib, + '-DBLAS_LIBRARY_DIRS=%s' % ';'.join(blas.directories), '-DTPL_ENABLE_LAPACK=ON', '-DLAPACK_LIBRARY_NAMES=%s' % ';'.join(lapack.names), - '-DLAPACK_LIBRARY_DIRS=%s' % spec['lapack'].prefix.lib, + '-DLAPACK_LIBRARY_DIRS=%s' % ';'.join(lapack.directories), '-DTrilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON', '-DTrilinos_ENABLE_CXX11:BOOL=ON', '-DTPL_ENABLE_Netcdf:BOOL=ON', diff --git a/var/spack/repos/builtin/packages/vtk/package.py b/var/spack/repos/builtin/packages/vtk/package.py index f7015904b0..fe3ebc9536 100644 --- a/var/spack/repos/builtin/packages/vtk/package.py +++ b/var/spack/repos/builtin/packages/vtk/package.py @@ -42,12 +42,16 @@ class Vtk(Package): patch("gcc.patch") + extends('python', when='+python') + depends_on('python', when='+python') depends_on('cmake', type='build') depends_on("qt") # VTK7 defaults to OpenGL2 rendering backend variant('opengl2', default=True, description='Build with OpenGL instead of OpenGL2 backend') + variant('python', default=False, + description='Build the python modules') def install(self, spec, prefix): def feature_to_bool(feature, on='ON', off='OFF'): @@ -59,8 +63,8 @@ class Vtk(Package): cmake_args = [ "..", "-DBUILD_SHARED_LIBS=ON", + "-DVTK_WRAP_PYTHON=" + ("ON" if "+python" in spec else "OFF"), # Disable wrappers for other languages. - "-DVTK_WRAP_PYTHON=OFF", "-DVTK_WRAP_JAVA=OFF", "-DVTK_WRAP_TCL=OFF"] cmake_args.extend(std_cmake_args) |