diff options
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/gatk/package.py | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/gatk/package.py b/var/spack/repos/builtin/packages/gatk/package.py index f7ce7c1714..e2462ea4e6 100644 --- a/var/spack/repos/builtin/packages/gatk/package.py +++ b/var/spack/repos/builtin/packages/gatk/package.py @@ -35,6 +35,8 @@ class Gatk(Package): homepage = "https://software.broadinstitute.org/gatk/" url = "https://github.com/broadinstitute/gatk/releases/download/4.0.4.0/gatk-4.0.4.0.zip" + version('4.0.8.1', sha256='6d47463dfd8c16ffae82fd29e4e73503e5b7cd0fcc6fea2ed50ee3760dd9acd9', + url='https://github.com/broadinstitute/gatk/archive/4.0.8.1.tar.gz') version('4.0.4.0', '083d655883fb251e837eb2458141fc2b', url="https://github.com/broadinstitute/gatk/releases/download/4.0.4.0/gatk-4.0.4.0.zip") version('3.8-0', '0581308d2a25f10d11d3dfd0d6e4d28e', extension='tar.gz', @@ -46,10 +48,10 @@ class Gatk(Package): def install(self, spec, prefix): mkdirp(prefix.bin) - # The list of files to install varies with release... - # ... but skip the spack-{build.env}.out files and gatkdoc directory. + + # Install all executable non-script files to prefix bin files = [x for x in glob.glob("*") - if not re.match("^spack-", x) and not re.match("^gatkdoc", x)] + if not re.match("^.*\.sh$", x) and is_exe(x)] for f in files: install(f, prefix.bin) |