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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/qtltools/package.py | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/qtltools/package.py b/var/spack/repos/builtin/packages/qtltools/package.py new file mode 100644 index 0000000000..8cdee305d1 --- /dev/null +++ b/var/spack/repos/builtin/packages/qtltools/package.py @@ -0,0 +1,30 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class Qtltools(MakefilePackage): + """A complete tool set for molecular QTL discovery and analysis.""" + + homepage = "https://qtltools.github.io/qtltools/" + url = "https://github.com/qtltools/qtltools/archive/refs/tags/1.3.1.tar.gz" + + version("1.3.1", sha256="033b9b61923fd65c4b8b80bc0add321e6fd6fb40de49d15c2dfe6a4d7e60764a") + version("1.3", sha256="032020d7e038eac4ec01701343a887bced7cca356cbd24b3d5bbadf83686faeb") + + depends_on("boost +pic +iostreams +program_options") + depends_on("gsl") + depends_on("htslib ~libcurl ~libdeflate") + depends_on("r +rmath") + + def edit(self, spec, prefix): + makefile = FileFilter("Makefile") + makefile.filter("BOOST_INC=.*", "BOOST_INC=" + self.spec["boost"].prefix.include) + makefile.filter("BOOST_LIB=.*", "BOOST_LIB=" + self.spec["boost"].prefix.lib) + makefile.filter("RMATH_INC=.*", "RMATH_INC=" + self.spec["r"].prefix.include) + makefile.filter("RMATH_LIB=.*", "RMATH_LIB=" + self.spec["r"].prefix.rlib) + makefile.filter("HTSLD_INC=.*", "HTSLD_INC=" + self.spec["htslib"].prefix.include) + makefile.filter("HTSLD_LIB=.*", "HTSLD_LIB=" + self.spec["htslib"].prefix.lib) |