diff options
Diffstat (limited to 'var')
8 files changed, 155 insertions, 243 deletions
diff --git a/var/spack/repos/builtin/packages/mxnet/cmake_cuda_flags.patch b/var/spack/repos/builtin/packages/mxnet/cmake_cuda_flags.patch new file mode 100644 index 0000000000..8019f7d423 --- /dev/null +++ b/var/spack/repos/builtin/packages/mxnet/cmake_cuda_flags.patch @@ -0,0 +1,14 @@ +https://github.com/apache/incubator-mxnet/pull/17645 +diff --git a/CMakeLists.txt b/CMakeLists.txt +index 437d01668..1049a53b2 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -662,7 +662,7 @@ add_subdirectory("3rdparty/mshadow") + + set(MXNET_INSTALL_TARGETS mxnet) + if(UNIX) +- string(APPEND CMAKE_CUDA_FLAGS "${CUDA_ARCH_FLAGS_SPACES}") ++ string(APPEND CMAKE_CUDA_FLAGS " ${CUDA_ARCH_FLAGS_SPACES}") + # Create dummy file since we want an empty shared library before linking + set(DUMMY_SOURCE ${CMAKE_BINARY_DIR}/dummy.c) + file(WRITE ${DUMMY_SOURCE} "") diff --git a/var/spack/repos/builtin/packages/mxnet/makefile-cuda-stub-1.6.patch b/var/spack/repos/builtin/packages/mxnet/makefile-cuda-stub-1.6.patch deleted file mode 100644 index fd93a244a9..0000000000 --- a/var/spack/repos/builtin/packages/mxnet/makefile-cuda-stub-1.6.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/Makefile b/Makefile -index 4746cc434..335c79b64 100644 ---- a/Makefile -+++ b/Makefile -@@ -518,7 +518,7 @@ ifeq ($(USE_CUDA), 1) - endif - # Make sure to add stubs as fallback in order to be able to build - # without full CUDA install (especially if run without nvidia-docker) -- LDFLAGS += -L/usr/local/cuda/lib64/stubs -+ LDFLAGS += -L$(USE_CUDA_PATH)/lib64/stubs - ifeq ($(USE_NCCL), 1) - ifneq ($(USE_NCCL_PATH), NONE) - CFLAGS += -I$(USE_NCCL_PATH)/include diff --git a/var/spack/repos/builtin/packages/mxnet/makefile-cudnn-path-1.6.patch b/var/spack/repos/builtin/packages/mxnet/makefile-cudnn-path-1.6.patch deleted file mode 100644 index 8ae19440ad..0000000000 --- a/var/spack/repos/builtin/packages/mxnet/makefile-cudnn-path-1.6.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/Makefile b/Makefile -index 4746cc434..e738fc53f 100644 ---- a/Makefile -+++ b/Makefile -@@ -509,7 +509,7 @@ LIB_DEP += $(DMLC_CORE)/libdmlc.a $(NNVM_PATH)/lib/libnnvm.a - ALL_DEP = $(OBJ) $(EXTRA_OBJ) $(PLUGIN_OBJ) $(LIB_DEP) - - ifeq ($(USE_CUDA), 1) -- CFLAGS += -I$(ROOTDIR)/3rdparty/nvidia_cub -+ CFLAGS += -I$(CUB_INCLUDE) -I$(CUDNN_PATH)/include - ALL_DEP += $(CUOBJ) $(EXTRA_CUOBJ) $(PLUGIN_CUOBJ) - LDFLAGS += -lcufft - ifeq ($(ENABLE_CUDA_RTC), 1) diff --git a/var/spack/repos/builtin/packages/mxnet/makefile.opencv.patch b/var/spack/repos/builtin/packages/mxnet/makefile.opencv.patch deleted file mode 100644 index 45e04ea626..0000000000 --- a/var/spack/repos/builtin/packages/mxnet/makefile.opencv.patch +++ /dev/null @@ -1,35 +0,0 @@ -commit 638527ffaa35ffb0bf88a32910b809df09432406 -Author: Toyohisa Kameyama <kameyama@riken.jp> -Date: Mon May 18 11:58:00 2020 +0900 - - Makefile bug fix for opencv4. - -diff --git a/Makefile b/Makefile -index 51930c782..7f5d4da39 100644 ---- a/Makefile -+++ b/Makefile -@@ -165,7 +165,23 @@ endif - ifeq ($(USE_OPENCV), 1) - CFLAGS += -DMXNET_USE_OPENCV=1 - ifneq ($(filter-out NONE, $(USE_OPENCV_INC_PATH)),) -- CFLAGS += -I$(USE_OPENCV_INC_PATH)/include -+ ifneq ($(wildcard $(USE_OPENCV_INC_PATH)/include/opencv4/opencv2/opencv*),) -+ opencv_inc = -I$(USE_OPENCV_INC_PATH)/include/opencv4 -+ endif -+ ifneq ($(wildcard $(USE_OPENCV_INC_PATH)/include/opencv2/opencv*),) -+ opencv_inc = -I$(USE_OPENCV_INC_PATH)/include -+ endif -+ ifneq ($(wildcard $(USE_OPENCV_INC_PATH)/opencv4/opencv2/opencv*),) -+ opencv_inc = -I$(USE_OPENCV_INC_PATH)/opencv4 -+ endif -+ ifneq ($(wildcard $(USE_OPENCV_INC_PATH)/opencv2/opencv*),) -+ opencv_inc = -I$(USE_OPENCV_INC_PATH) -+ endif -+ ifneq ($(filter-out NONE, $(opencv_inc)),) -+ CFLAGS += $(opencv_inc) -+ else -+$(error Cannot determine OpenCV include path) -+ endif - ifeq ($(filter-out NONE, $(USE_OPENCV_LIB_PATH)),) - $(error Please add the path of OpenCV shared library path into `USE_OPENCV_LIB_PATH`, when `USE_OPENCV_INC_PATH` is not NONE) - endif diff --git a/var/spack/repos/builtin/packages/mxnet/makefile.patch b/var/spack/repos/builtin/packages/mxnet/makefile.patch deleted file mode 100644 index ceebe21447..0000000000 --- a/var/spack/repos/builtin/packages/mxnet/makefile.patch +++ /dev/null @@ -1,81 +0,0 @@ -From 22b64127d7acc9c255b007e120e2a721f4e136d2 Mon Sep 17 00:00:00 2001 -From: Jianwen WEI <weijianwen@gmail.com> -Date: Fri, 18 Aug 2017 23:32:16 +0800 -Subject: [PATCH] Enable customize CUB MSHADOW PSLITE CUDA paths. - ---- - Makefile | 26 +++++++++++++++++++++----- - 1 file changed, 21 insertions(+), 5 deletions(-) - -diff --git a/Makefile b/Makefile -index c71cb13..a53d072 100644 ---- a/Makefile -+++ b/Makefile -@@ -14,6 +14,19 @@ ifndef DMLC_CORE - DMLC_CORE = $(ROOTDIR)/dmlc-core - endif - -+ifndef MSHADOW_PATH -+ MSHADOW_PATH = $(ROOTDIR)/mshadow -+endif -+ifneq ("$(wildcard $(MSHADOW_PATH)/include/mshadow/base.h)","") -+MSHADOW_INC = $(MSHADOW_PATH)/include -+else -+MSHADOW_INC = $(MSHADOW_PATH) -+endif -+ -+ifndef PS_PATH -+ PS_PATH = $(ROOTDIR)/ps-lite -+endif -+ - ifndef NNVM_PATH - NNVM_PATH = $(ROOTDIR)/nnvm - endif -@@ -32,7 +45,7 @@ ifeq ($(USE_MKL2017), 1) - export USE_MKLML = $(lastword $(RETURN_STRING)) - endif - --include mshadow/make/mshadow.mk -+include $(MSHADOW_PATH)/make/mshadow.mk - include $(DMLC_CORE)/make/dmlc.mk - - # all tge possible warning tread -@@ -49,7 +62,7 @@ ifeq ($(DEBUG), 1) - else - CFLAGS += -O3 -DNDEBUG=1 - endif --CFLAGS += -I$(ROOTDIR)/mshadow/ -I$(ROOTDIR)/dmlc-core/include -fPIC -I$(NNVM_PATH)/include -Iinclude $(MSHADOW_CFLAGS) -+CFLAGS += -I$(MSHADOW_INC) -I$(DMLC_CORE)/include -fPIC -I$(NNVM_PATH)/include -Iinclude $(MSHADOW_CFLAGS) - LDFLAGS = -pthread $(MSHADOW_LDFLAGS) $(DMLC_LDFLAGS) - ifeq ($(DEBUG), 1) - NVCCFLAGS = -std=c++11 -Xcompiler -D_FORCE_INLINES -g -G -O0 -ccbin $(CXX) $(MSHADOW_NVCCFLAGS) -@@ -125,8 +138,11 @@ ifneq ($(USE_CUDA_PATH), NONE) - NVCC=$(USE_CUDA_PATH)/bin/nvcc - endif - -+ifndef CUB_INCLUDE -+ CUB_PATH = $(ROOTDIR)/cub -+endif -+ - # ps-lite --PS_PATH=$(ROOTDIR)/ps-lite - DEPS_PATH=$(shell pwd)/deps - include $(PS_PATH)/make/ps.mk - ifeq ($(USE_DIST_KVSTORE), 1) -@@ -181,11 +197,11 @@ else - endif - - # all dep --LIB_DEP += $(DMLC_CORE)/libdmlc.a $(NNVM_PATH)/lib/libnnvm.a -+LIB_DEP += $(DMLC_CORE)/lib/libdmlc.a $(NNVM_PATH)/lib/libnnvm.a - ALL_DEP = $(OBJ) $(EXTRA_OBJ) $(PLUGIN_OBJ) $(LIB_DEP) - - ifeq ($(USE_CUDA), 1) -- CFLAGS += -I$(ROOTDIR)/cub -+ CFLAGS += -I$(CUB_INCLUDE) -I$(USE_CUDA_PATH)/include -I$(CUDNN_PATH)/include - ALL_DEP += $(CUOBJ) $(EXTRA_CUOBJ) $(PLUGIN_CUOBJ) - LDFLAGS += -lcuda -lcufft - SCALA_PKG_PROFILE := $(SCALA_PKG_PROFILE)-gpu --- -1.8.3.1 - diff --git a/var/spack/repos/builtin/packages/mxnet/openblas-1.6.0.patch b/var/spack/repos/builtin/packages/mxnet/openblas-1.6.0.patch new file mode 100644 index 0000000000..157b857c81 --- /dev/null +++ b/var/spack/repos/builtin/packages/mxnet/openblas-1.6.0.patch @@ -0,0 +1,14 @@ +https://github.com/apache/incubator-mxnet/pull/19174 +--- a/CMakeLists.txt 2020-01-30 17:45:22.000000000 -0600 ++++ b/CMakeLists.txt 2021-02-03 11:11:30.000000000 -0600 +@@ -446,7 +446,9 @@ + if(USE_LAPACK) + message("USE_LAPACK is ON") + add_definitions(-DMXNET_USE_LAPACK=1) +- if (NOT MSVC) ++ # BLAS=open case is handled in ChooseBlas.cmake ++ if(NOT MSVC AND NOT CMAKE_BUILD_TYPE STREQUAL "Distribution" ++ AND NOT BLAS STREQUAL "Open" AND NOT BLAS STREQUAL "open") + list(APPEND mxnet_LINKER_LIBS lapack) + endif() + endif() diff --git a/var/spack/repos/builtin/packages/mxnet/openblas-1.7.0.patch b/var/spack/repos/builtin/packages/mxnet/openblas-1.7.0.patch new file mode 100644 index 0000000000..e143671a08 --- /dev/null +++ b/var/spack/repos/builtin/packages/mxnet/openblas-1.7.0.patch @@ -0,0 +1,16 @@ +https://github.com/apache/incubator-mxnet/pull/19174 +--- a/CMakeLists.txt 2020-07-16 00:32:00.000000000 -0500 ++++ b/CMakeLists.txt 2021-02-02 15:30:13.000000000 -0600 +@@ -446,9 +446,9 @@ + if(USE_LAPACK) + message("USE_LAPACK is ON") + add_definitions(-DMXNET_USE_LAPACK=1) +- # In the CMAKE_BUILD_TYPE="Distribution" case, we link against Blas libraries +- # that already provide lapack symbols. Thus -llapack would be wrong. +- if (NOT MSVC AND NOT CMAKE_BUILD_TYPE STREQUAL "Distribution") ++ # BLAS=open case is handled in ChooseBlas.cmake ++ if(NOT MSVC AND NOT CMAKE_BUILD_TYPE STREQUAL "Distribution" ++ AND NOT BLAS STREQUAL "Open" AND NOT BLAS STREQUAL "open") + list(APPEND mxnet_LINKER_LIBS lapack) + endif() + endif() diff --git a/var/spack/repos/builtin/packages/mxnet/package.py b/var/spack/repos/builtin/packages/mxnet/package.py index 2a5e652120..87121cb5c2 100644 --- a/var/spack/repos/builtin/packages/mxnet/package.py +++ b/var/spack/repos/builtin/packages/mxnet/package.py @@ -6,129 +6,139 @@ from spack import * -class Mxnet(MakefilePackage, CudaPackage): +class Mxnet(CMakePackage, CudaPackage): """MXNet is a deep learning framework designed for both efficiency and flexibility.""" - homepage = "http://mxnet.io" - url = "https://github.com/apache/incubator-mxnet/releases/download/1.3.0/apache-mxnet-src-1.3.0-incubating.tar.gz" + homepage = "https://mxnet.apache.org" + url = "https://archive.apache.org/dist/incubator/mxnet/1.7.0/apache-mxnet-src-1.7.0-incubating.tar.gz" + list_url = "https://mxnet.apache.org/get_started/download" + git = "https://github.com/apache/incubator-mxnet.git" maintainers = ['adamjstewart'] - + import_modules = [ + 'mxnet', 'mxnet.numpy_extension', 'mxnet.optimizer', 'mxnet.module', + 'mxnet.io', 'mxnet.cython', 'mxnet.ndarray', 'mxnet.gluon', + 'mxnet.symbol', 'mxnet._cy3', 'mxnet.contrib', 'mxnet.numpy', + 'mxnet._ffi', 'mxnet.image', 'mxnet.kvstore', 'mxnet.notebook', + 'mxnet._ctypes', 'mxnet.rnn', 'mxnet.ndarray.numpy_extension', + 'mxnet.ndarray.numpy', 'mxnet.gluon.nn', 'mxnet.gluon.model_zoo', + 'mxnet.gluon.contrib', 'mxnet.gluon.data', 'mxnet.gluon.rnn', + 'mxnet.gluon.model_zoo.vision', 'mxnet.gluon.contrib.nn', + 'mxnet.gluon.contrib.estimator', 'mxnet.gluon.contrib.cnn', + 'mxnet.gluon.contrib.data', 'mxnet.gluon.contrib.rnn', + 'mxnet.gluon.data.vision', 'mxnet.symbol.numpy_extension', + 'mxnet.symbol.numpy', 'mxnet.contrib.onnx', + 'mxnet.contrib.svrg_optimization', 'mxnet.contrib.amp', + 'mxnet.contrib.text', 'mxnet.contrib.onnx.mx2onnx', + 'mxnet.contrib.onnx.onnx2mx', 'mxnet.contrib.amp.lists', + 'mxnet._ffi._cy3', 'mxnet._ffi._ctypes' + ] + + version('master', branch='master') + version('1.master', branch='v1.x') + version('1.7.0', sha256='1d20c9be7d16ccb4e830e9ee3406796efaf96b0d93414d676337b64bc59ced18') version('1.6.0', sha256='01eb06069c90f33469c7354946261b0a94824bbaf819fd5d5a7318e8ee596def') version('1.3.0', sha256='c00d6fbb2947144ce36c835308e603f002c1eb90a9f4c5a62f4d398154eed4d2') + variant('build_type', default='Distribution', + description='CMake build type', + values=('Distribution', 'Debug', 'Release', + 'RelWithDebInfo', 'MinSizeRel')) variant('cuda', default=True, description='Enable CUDA support') + variant('cudnn', default=True, description='Build with cudnn support') + variant('nccl', default=False, description='Use NVidia NCCL with CUDA') variant('opencv', default=True, description='Enable OpenCV support') variant('openmp', default=False, description='Enable OpenMP support') - variant('profiler', default=False, description='Enable Profiler (for verification and debug only).') + variant('lapack', default=True, description='Build with lapack support') + variant('mkldnn', default=False, description='Build with MKL-DNN support') variant('python', default=True, description='Install python bindings') - depends_on('dmlc-core@20170508') - depends_on('dmlc-core+openmp', when='+openmp') - depends_on('dmlc-core~openmp', when='~openmp') - depends_on('mshadow@20170721') - depends_on('ps-lite@20170328') - depends_on('nnvm~shared@20170418') + depends_on('cmake@3.13:', type='build') + depends_on('ninja', type='build') + depends_on('pkgconfig', when='@1.6.0', type='build') depends_on('blas') - depends_on('cudnn', when='+cuda') - depends_on('cudnn', when='+cuda') - depends_on('cub', when='+cuda') - depends_on('opencv+core+imgproc+highgui+jpeg+png+tiff~eigen~ipp@3.0:3.4.99', when='@1.3.0 +opencv') - depends_on('opencv+core+imgproc+highgui+jpeg+png+tiff~eigen~ipp@3.0:', when='+opencv') - - # python extensions - depends_on('python@2.7:', type=('build', 'run'), when='+python') - depends_on('py-setuptools', type='build', when='+python') - depends_on('py-numpy@:1.15.0', type=('build', 'run'), when='@1.3.0 +python') - depends_on('py-numpy@1.16:', type=('build', 'run'), when='@1.6.0 +python') - extends('python', when='+python') + depends_on('cudnn', when='+cudnn') + depends_on('nccl', when='+nccl') + depends_on('opencv+core+highgui+imgproc+imgcodecs', when='+opencv') + depends_on('lapack', when='+lapack') + depends_on('onednn', when='+mkldnn') - patch('makefile.opencv.patch', when='@1.6.0') - patch('makefile-cudnn-path-1.6.patch', when='@1.6.0') - patch('makefile-cuda-stub-1.6.patch', when='@1.6.0') + # python/setup.py + extends('python', when='+python') + depends_on('python@2.7:2.8,3.4:', when='+python', type=('build', 'run')) + depends_on('py-setuptools', when='+python', type='build') + depends_on('py-cython', when='+python', type='build') + depends_on('py-numpy@1.16.1:1.999', when='@1.6:+python', type=('build', 'run')) + depends_on('py-numpy@1.8.2:1.15.0', when='@1.3.0+python', type=('build', 'run')) + depends_on('py-requests@2.20.0:2.999', when='@1.6:+python', type=('build', 'run')) + depends_on('py-requests@2.18.4:2.18.999', when='@1.3.0+python', type=('build', 'run')) + depends_on('py-graphviz@0.8.1:0.8.999', when='+python', type=('build', 'run')) + + conflicts('+cudnn', when='~cuda') + conflicts('+nccl', when='~cuda') + + patch('openblas-1.7.0.patch', when='@1.7.0:1.master') + patch('openblas-1.6.0.patch', when='@1.6.0') + patch('cmake_cuda_flags.patch', when='@1.6:1.7') patch('parallell_shuffle.patch', when='@1.6.0') - def build(self, spec, prefix): - # copy template configuration file - copy('make/config.mk', 'config.mk') + # python/setup.py assumes libs can be found in build directory + build_directory = 'build' + generator = 'Ninja' - # remove compiler overrides - filter_file('export CC = gcc', '', 'config.mk', string=True) - filter_file('export CXX = g++', '', 'config.mk', string=True) + def setup_run_environment(self, env): + env.set('MXNET_LIBRARY_PATH', self.spec['mxnet'].libs[0]) - # add blas prefix to include paths - filter_file( - '-I$(NNVM_PATH)/include', - '-I$(NNVM_PATH)/include -I%s/include' % spec['blas'].prefix, - 'Makefile', string=True - ) - - # mxnet comes with its own version of nnvm and dmlc. - # building it will fail if we use the spack paths + if self.spec.satisfies('+nccl ^nccl@2.1:'): + env.set('NCCL_LAUNCH_MODE', 'PARALLEL') + def cmake_args(self): + # https://mxnet.apache.org/get_started/build_from_source args = [ - 'CC=%s' % self.compiler.cc, - 'CXX=%s' % self.compiler.cxx, - 'MSHADOW_PATH=%s' % spec['mshadow'].prefix, - 'PS_PATH=%s' % spec['ps-lite'].prefix, - 'USE_OPENMP=%s' % ('1' if '+openmp' in spec else '0'), - 'USE_CUDA=%s' % ('1' if '+cuda' in spec else '0'), - 'USE_CUDNN=%s' % ('1' if '+cuda' in spec else '0'), - 'USE_OPENCV=%s' % ('1' if '+opencv' in spec else '0'), - 'USE_PROFILER=%s' % ('1' if '+profiler' in spec else '0'), + self.define_from_variant('USE_CUDA', 'cuda'), + self.define_from_variant('USE_CUDNN', 'cudnn'), + self.define_from_variant('USE_OPENCV', 'opencv'), + self.define_from_variant('USE_OPENMP', 'openmp'), + self.define_from_variant('USE_LAPACK', 'lapack'), + self.define_from_variant('USE_MKLDNN', 'mkldnn'), ] - if '+opencv' in spec: - if spec.satisfies('@1.3.0'): - filter_file( - '$(shell pkg-config --cflags opencv)', - spec['opencv'].headers.include_flags, - 'Makefile', string=True - ) - filter_file( - '$(filter-out -lopencv_ts, ' - '$(shell pkg-config --libs opencv))', - spec['opencv'].libs.link_flags, - 'Makefile', string=True - ) - else: - args.extend( - ['USE_OPENCV_INC_PATH=' + - spec['opencv'].headers.directories[0], - 'USE_OPENCV_LIB_PATH=' + - spec['opencv'].libs.directories[0]] - ) - - if 'openblas' in spec: - args.extend(['USE_BLAS=openblas']) - elif 'atlas' in spec or 'cblas' in spec: - args.extend(['USE_BLAS=atlas']) - else: - args.extend(['USE_BLAS=blas']) - - if '+cuda' in spec: - args.extend(['USE_CUDA_PATH=%s' % spec['cuda'].prefix, - 'CUDNN_PATH=%s' % spec['cudnn'].prefix, - 'CUB_INCLUDE=%s' % spec['cub'].prefix.include]) - # By default, all cuda architectures are built. Restrict only - # if a specific list of architectures is specified in cuda_arch. - if 'cuda_arch=none' not in spec: - cuda_flags = self.cuda_flags(self.spec.variants['cuda_arch'].value) - args.append('CUDA_ARCH={0}'.format(' '.join(cuda_flags))) - - make(*args) - - def install(self, spec, prefix): - # mxnet is just a shared library -- no need to install a bin tree - - install_tree('include', prefix.include) - install_tree('lib', prefix.lib) - - # install python bindings - if '+python' in spec: - # The python libs are in a separate dir, and it is necessary to change - # directory so that setup.py picks them up. + if '+cuda' in self.spec: + if 'cuda_arch=none' not in self.spec: + cuda_arch = ';'.join('{0:.1f}'.format(float(i) / 10.0) for i + in self.spec.variants['cuda_arch'].value) + args.append(self.define('MXNET_CUDA_ARCH', cuda_arch)) + + args.append(self.define_from_variant('USE_NCCL', 'nccl')) + + # Workaround for bug in GCC 8+ and CUDA 10 on PowerPC + args.append(self.define( + 'CMAKE_CUDA_FLAGS', self.compiler.cxx11_flag)) + + return args + + @run_after('build') + def build_python(self): + if '+python' in self.spec: with working_dir('python'): - setup_py('install', '--prefix={0}'.format(prefix), + setup_py('build') + + @run_after('install') + def install_python(self): + if '+python' in self.spec: + with working_dir('python'): + setup_py('install', '--prefix={0}'.format(self.prefix), '--single-version-externally-managed', '--root=/') + + def test(self): + """Attempts to import modules of the installed package.""" + + if '+python' in self.spec: + # Make sure we are importing the installed modules, + # not the ones in the source directory + for module in self.import_modules: + self.run_test(self.spec['python'].command.path, + ['-c', 'import {0}'.format(module)], + purpose='checking import of {0}'.format(module), + work_dir='spack-test') |