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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/microbiomeutil/package.py | 53 |
1 files changed, 53 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/microbiomeutil/package.py b/var/spack/repos/builtin/packages/microbiomeutil/package.py new file mode 100644 index 0000000000..7be7a4ac0d --- /dev/null +++ b/var/spack/repos/builtin/packages/microbiomeutil/package.py @@ -0,0 +1,53 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Microbiomeutil(MakefilePackage): + """Microbiome analysis utilities""" + + homepage = "http://microbiomeutil.sourceforge.net/" + url = "https://downloads.sourceforge.net/project/microbiomeutil/microbiomeutil-r20110519.tgz" + + version('20110519', '11eaac4b0468c05297ba88ec27bd4b56') + + depends_on('perl', type=('build', 'run')) + depends_on('blast-plus') + depends_on('cdbfasta') + + def install(self, spec, prefix): + install_tree('ChimeraSlayer', prefix.ChimeraSlayer) + install_tree('NAST-iEr', join_path(prefix, 'NAST-iEr')) + install_tree('TreeChopper', prefix.TreeChopper) + install_tree('WigeoN', prefix.WigeoN) + install_tree('docs', prefix.docs) + install_tree('RESOURCES', prefix.resources) + install_tree('AmosCmp16Spipeline', prefix.AmosCmp16Spipeline) + + def setup_environment(self, spack_env, run_env): + run_env.prepend_path('PATH', self.prefix.ChimeraSlayer) + run_env.prepend_path('PATH', join_path(self.prefix, 'NAST-iEr')) + run_env.prepend_path('PATH', self.prefix.TreeChopper) + run_env.prepend_path('PATH', self.prefix.WigeoN) |