diff options
Diffstat (limited to 'var')
-rw-r--r-- | var/spack/mock_configs/site_spackconfig/compilers.yaml | 12 | ||||
-rw-r--r-- | var/spack/packages/R/package.py | 33 | ||||
-rw-r--r-- | var/spack/packages/clang/package.py | 95 | ||||
-rw-r--r-- | var/spack/packages/llvm/package.py | 72 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/a/package.py (renamed from var/spack/mock_packages/a/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/b/package.py (renamed from var/spack/mock_packages/b/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/c/package.py (renamed from var/spack/mock_packages/c/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/callpath/package.py (renamed from var/spack/mock_packages/callpath/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/direct_mpich/package.py (renamed from var/spack/mock_packages/direct_mpich/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/dyninst/package.py (renamed from var/spack/mock_packages/dyninst/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/e/package.py (renamed from var/spack/mock_packages/e/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/fake/package.py (renamed from var/spack/mock_packages/fake/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/git-test/package.py (renamed from var/spack/mock_packages/git-test/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/hg-test/package.py (renamed from var/spack/mock_packages/hg-test/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/indirect_mpich/package.py (renamed from var/spack/mock_packages/indirect_mpich/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/libdwarf/package.py (renamed from var/spack/mock_packages/libdwarf/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/libelf/package.py (renamed from var/spack/mock_packages/libelf/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/mpich/package.py (renamed from var/spack/mock_packages/mpich/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/mpich2/package.py (renamed from var/spack/mock_packages/mpich2/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/mpileaks/package.py (renamed from var/spack/mock_packages/mpileaks/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/multimethod/package.py (renamed from var/spack/mock_packages/multimethod/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/netlib-blas/package.py (renamed from var/spack/mock_packages/netlib-blas/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/netlib-lapack/package.py (renamed from var/spack/mock_packages/netlib-lapack/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/openblas/package.py (renamed from var/spack/mock_packages/openblas/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/optional-dep-test-2/package.py (renamed from var/spack/mock_packages/optional-dep-test-2/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/optional-dep-test-3/package.py (renamed from var/spack/mock_packages/optional-dep-test-3/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/optional-dep-test/package.py (renamed from var/spack/mock_packages/optional-dep-test/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/svn-test/package.py (renamed from var/spack/mock_packages/svn-test/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/trivial_install_test_package/package.py (renamed from var/spack/mock_packages/trivial_install_test_package/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/packages/zmpi/package.py (renamed from var/spack/mock_packages/zmpi/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin.mock/repo.yaml | 2 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/ImageMagick/package.py (renamed from var/spack/packages/ImageMagick/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/Mitos/package.py (renamed from var/spack/packages/Mitos/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/R/package.py | 49 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/SAMRAI/no-tool-build.patch (renamed from var/spack/packages/SAMRAI/no-tool-build.patch) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/SAMRAI/package.py (renamed from var/spack/packages/SAMRAI/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/activeharmony/package.py (renamed from var/spack/packages/activeharmony/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/adept-utils/package.py (renamed from var/spack/packages/adept-utils/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/apex/package.py (renamed from var/spack/packages/apex/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/arpack/package.py (renamed from var/spack/packages/arpack/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/asciidoc/package.py (renamed from var/spack/packages/asciidoc/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/atk/package.py (renamed from var/spack/packages/atk/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/atlas/package.py (renamed from var/spack/packages/atlas/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/atop/package.py (renamed from var/spack/packages/atop/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/autoconf/package.py (renamed from var/spack/packages/autoconf/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/automaded/package.py (renamed from var/spack/packages/automaded/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/automake/package.py (renamed from var/spack/packages/automake/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/bear/package.py (renamed from var/spack/packages/bear/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/bib2xhtml/package.py (renamed from var/spack/packages/bib2xhtml/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/binutils/binutilskrell-2.24.patch (renamed from var/spack/packages/binutils/binutilskrell-2.24.patch) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/binutils/cr16.patch | 26 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/binutils/package.py (renamed from var/spack/packages/binutils/package.py) | 6 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/bison/package.py (renamed from var/spack/packages/bison/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/boost/package.py (renamed from var/spack/packages/boost/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/bowtie2/bowtie2-2.5.patch (renamed from var/spack/packages/bowtie2/bowtie2-2.5.patch) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/bowtie2/package.py (renamed from var/spack/packages/bowtie2/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/boxlib/package.py (renamed from var/spack/packages/boxlib/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/bzip2/package.py (renamed from var/spack/packages/bzip2/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cairo/package.py (renamed from var/spack/packages/cairo/package.py) | 1 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/callpath/package.py (renamed from var/spack/packages/callpath/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cblas/package.py (renamed from var/spack/packages/cblas/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cbtf-argonavis/package.py (renamed from var/spack/packages/cbtf-argonavis/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cbtf-krell/package.py (renamed from var/spack/packages/cbtf-krell/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cbtf-lanl/package.py (renamed from var/spack/packages/cbtf-lanl/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cbtf/package.py (renamed from var/spack/packages/cbtf/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cereal/Werror.patch | 33 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cereal/package.py | 34 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cfitsio/package.py (renamed from var/spack/packages/cfitsio/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cgal/package.py (renamed from var/spack/packages/cgal/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cgm/package.py (renamed from var/spack/packages/cgm/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cityhash/package.py (renamed from var/spack/packages/cityhash/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cleverleaf/package.py (renamed from var/spack/packages/cleverleaf/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cloog/package.py (renamed from var/spack/packages/cloog/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cmake/package.py (renamed from var/spack/packages/cmake/package.py) | 6 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/coreutils/package.py (renamed from var/spack/packages/coreutils/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cppcheck/package.py (renamed from var/spack/packages/cppcheck/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cram/package.py (renamed from var/spack/packages/cram/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cscope/package.py (renamed from var/spack/packages/cscope/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/cube/package.py (renamed from var/spack/packages/cube/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/curl/package.py (renamed from var/spack/packages/curl/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/czmq/package.py (renamed from var/spack/packages/czmq/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/damselfly/package.py (renamed from var/spack/packages/damselfly/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/dbus/package.py (renamed from var/spack/packages/dbus/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/docbook-xml/package.py (renamed from var/spack/packages/docbook-xml/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/doxygen/package.py (renamed from var/spack/packages/doxygen/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/dri2proto/package.py (renamed from var/spack/packages/dri2proto/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/dtcmp/package.py (renamed from var/spack/packages/dtcmp/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/dyninst/package.py (renamed from var/spack/packages/dyninst/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/elfutils/package.py (renamed from var/spack/packages/elfutils/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/expat/package.py (renamed from var/spack/packages/expat/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/extrae/package.py (renamed from var/spack/packages/extrae/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/exuberant-ctags/package.py (renamed from var/spack/packages/exuberant-ctags/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/fftw/package.py (renamed from var/spack/packages/fftw/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/fish/package.py (renamed from var/spack/packages/fish/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/flex/package.py (renamed from var/spack/packages/flex/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/fltk/font.patch | 44 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/fltk/package.py | 58 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/flux/package.py (renamed from var/spack/packages/flux/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/fontconfig/package.py (renamed from var/spack/packages/fontconfig/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/freetype/package.py (renamed from var/spack/packages/freetype/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/gasnet/package.py (renamed from var/spack/packages/gasnet/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/gcc/package.py (renamed from var/spack/packages/gcc/package.py) | 5 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/gdb/package.py (renamed from var/spack/packages/gdb/package.py) | 2 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/gdk-pixbuf/package.py (renamed from var/spack/packages/gdk-pixbuf/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/geos/package.py (renamed from var/spack/packages/geos/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/gflags/package.py (renamed from var/spack/packages/gflags/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/ghostscript/package.py (renamed from var/spack/packages/ghostscript/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/git/package.py (renamed from var/spack/packages/git/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/glib/package.py (renamed from var/spack/packages/glib/package.py) | 2 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/glm/package.py (renamed from var/spack/packages/glm/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/global/package.py (renamed from var/spack/packages/global/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/glog/package.py (renamed from var/spack/packages/glog/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/glpk/package.py (renamed from var/spack/packages/glpk/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/gmp/package.py (renamed from var/spack/packages/gmp/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/gmsh/package.py | 84 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/gnuplot/package.py (renamed from var/spack/packages/gnuplot/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/gnutls/package.py (renamed from var/spack/packages/gnutls/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/gperf/package.py (renamed from var/spack/packages/gperf/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/gperftools/package.py (renamed from var/spack/packages/gperftools/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/graphlib/package.py (renamed from var/spack/packages/graphlib/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/graphviz/package.py (renamed from var/spack/packages/graphviz/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/gsl/package.py (renamed from var/spack/packages/gsl/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/gtkplus/package.py (renamed from var/spack/packages/gtkplus/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/harfbuzz/package.py (renamed from var/spack/packages/harfbuzz/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/hdf5/package.py (renamed from var/spack/packages/hdf5/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/hwloc/package.py (renamed from var/spack/packages/hwloc/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/hypre/package.py (renamed from var/spack/packages/hypre/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/icu/package.py (renamed from var/spack/packages/icu/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/icu4c/package.py (renamed from var/spack/packages/icu4c/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/isl/package.py (renamed from var/spack/packages/isl/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/jdk/package.py (renamed from var/spack/packages/jdk/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/jemalloc/package.py (renamed from var/spack/packages/jemalloc/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/jpeg/package.py (renamed from var/spack/packages/jpeg/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/judy/package.py (renamed from var/spack/packages/judy/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/julia/gc.patch (renamed from var/spack/packages/julia/gc.patch) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/julia/package.py (renamed from var/spack/packages/julia/package.py) | 1 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/launchmon/package.py (renamed from var/spack/packages/launchmon/package.py) | 10 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/launchmon/patch.lmon_install_dir (renamed from var/spack/packages/launchmon/patch.lmon_install_dir) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/lcms/package.py (renamed from var/spack/packages/lcms/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/leveldb/package.py (renamed from var/spack/packages/leveldb/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libNBC/package.py (renamed from var/spack/packages/libNBC/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libarchive/package.py (renamed from var/spack/packages/libarchive/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libcerf/package.py (renamed from var/spack/packages/libcerf/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libcircle/package.py (renamed from var/spack/packages/libcircle/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libdrm/package.py (renamed from var/spack/packages/libdrm/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libdwarf/package.py (renamed from var/spack/packages/libdwarf/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libedit/package.py (renamed from var/spack/packages/libedit/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libelf/package.py (renamed from var/spack/packages/libelf/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libevent/package.py (renamed from var/spack/packages/libevent/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libffi/package.py (renamed from var/spack/packages/libffi/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libgcrypt/package.py (renamed from var/spack/packages/libgcrypt/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libgd/package.py (renamed from var/spack/packages/libgd/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libgpg-error/package.py (renamed from var/spack/packages/libgpg-error/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libjpeg-turbo/package.py (renamed from var/spack/packages/libjpeg-turbo/package.py) | 0 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/libjson-c/package.py (renamed from var/spack/packages/libjson-c/package.py) | 0 | ||||
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353 files changed, 713 insertions, 261 deletions
diff --git a/var/spack/mock_configs/site_spackconfig/compilers.yaml b/var/spack/mock_configs/site_spackconfig/compilers.yaml deleted file mode 100644 index 0a2dc893e2..0000000000 --- a/var/spack/mock_configs/site_spackconfig/compilers.yaml +++ /dev/null @@ -1,12 +0,0 @@ -compilers: - all: - clang@3.3: - cc: /path/to/clang - cxx: /path/to/clang++ - f77: None - fc: None - gcc@4.5.0: - cc: /path/to/gcc - cxx: /path/to/g++ - f77: /path/to/gfortran - fc: /path/to/gfortran diff --git a/var/spack/packages/R/package.py b/var/spack/packages/R/package.py deleted file mode 100644 index 2e6f65a742..0000000000 --- a/var/spack/packages/R/package.py +++ /dev/null @@ -1,33 +0,0 @@ -from spack import * - -class R(Package): - """R is 'GNU S', a freely available language and environment for - statistical computing and graphics which provides a wide va - riety of statistical and graphical techniques: linear and - nonlinear modelling, statistical tests, time series analysis, - classification, clustering, etc. Please consult the R project - homepage for further information.""" - homepage = "http://www.example.com" - url = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz" - - version('3.1.2', '3af29ec06704cbd08d4ba8d69250ae74') - - depends_on("readline") - depends_on("ncurses") - depends_on("icu") - depends_on("glib") - depends_on("zlib") - depends_on("libtiff") - depends_on("jpeg") - depends_on("cairo") - depends_on("pango") - depends_on("freetype") - depends_on("tcl") - depends_on("tk") - - def install(self, spec, prefix): - configure("--prefix=%s" % prefix, - "--enable-R-shlib", - "--enable-BLAS-shlib") - make() - make("install") diff --git a/var/spack/packages/clang/package.py b/var/spack/packages/clang/package.py deleted file mode 100644 index e46e08d5f1..0000000000 --- a/var/spack/packages/clang/package.py +++ /dev/null @@ -1,95 +0,0 @@ -############################################################################## -# Copyright (c) 2013, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. -# -# This file is part of Spack. -# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/llnl/spack -# Please also see the LICENSE file for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU General Public License (as published by -# the Free Software Foundation) version 2.1 dated February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public License -# along with this program; if not, write to the Free Software Foundation, -# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## - - -from spack import * - -import os -import os.path - -class Clang(Package): - """The goal of the Clang project is to create a new C, C++, - Objective C and Objective C++ front-end for the LLVM compiler. - """ - homepage = 'http://clang.llvm.org' - url = 'http://llvm.org/releases/3.7.0/cfe-3.7.0.src.tar.xz' - - depends_on('llvm@3.7.0', when='@3.7.0') - depends_on('llvm@3.6.2', when='@3.6.2') - depends_on('llvm@3.5.1', when='@3.5.1') - - version('3.7.0', '8f9d27335e7331cf0a4711e952f21f01', url='http://llvm.org/releases/3.7.0/cfe-3.7.0.src.tar.xz') - version('3.6.2', 'ff862793682f714bb7862325b9c06e20', url='http://llvm.org/releases/3.6.2/cfe-3.6.2.src.tar.xz') - version('3.5.1', '93f9532f8f7e6f1d8e5c1116907051cb', url='http://llvm.org/releases/3.5.1/cfe-3.5.1.src.tar.xz') - - ########## - # @3.7.0 - resource(name='clang-tools-extra', - url='http://llvm.org/releases/3.7.0/clang-tools-extra-3.7.0.src.tar.xz', - md5='d5a87dacb65d981a427a536f6964642e', destination='tools', when='@3.7.0') - ########## - - def install(self, spec, prefix): - env['CXXFLAGS'] = self.compiler.cxx11_flag - - with working_dir('spack-build', create=True): - - options = [] - if '@3.7.0:' in spec: - options.append('-DCLANG_DEFAULT_OPENMP_RUNTIME:STRING=libomp') - options.extend(std_cmake_args) - - cmake('..', - '-DCLANG_PATH_TO_LLVM_BUILD:PATH=%s' % spec['llvm'].prefix, - '-DLLVM_MAIN_SRC_DIR:PATH=%s' % spec['llvm'].prefix, - *options) - make() - make("install") - # CLang doesn't look in llvm folders for system headers... - self.link_llvm_directories(spec) - - def link_llvm_directories(self, spec): - - def clang_include_dir_at(root): - return join_path(root, 'include') - - def clang_lib_dir_at(root): - return join_path(root, 'lib/clang/', str(self.version), 'include') - - def do_link(source_dir, destination_dir): - if os.path.exists(source_dir): - for name in os.listdir(source_dir): - source = join_path(source_dir, name) - link = join_path(destination_dir, name) - os.symlink(source, link) - - # Link folder and files in include - llvm_dir = clang_include_dir_at(spec['llvm'].prefix) - clang_dir = clang_include_dir_at(self.prefix) - do_link(llvm_dir, clang_dir) - # Link folder and files in lib - llvm_dir = clang_lib_dir_at(spec['llvm'].prefix) - clang_dir = clang_lib_dir_at(self.prefix) - do_link(llvm_dir, clang_dir)
\ No newline at end of file diff --git a/var/spack/packages/llvm/package.py b/var/spack/packages/llvm/package.py deleted file mode 100644 index a3307584e0..0000000000 --- a/var/spack/packages/llvm/package.py +++ /dev/null @@ -1,72 +0,0 @@ -############################################################################## -# Copyright (c) 2013, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. -# -# This file is part of Spack. -# Written by David Beckingsale, david@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/llnl/spack -# Please also see the LICENSE file for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU General Public License (as published by -# the Free Software Foundation) version 2.1 dated February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public License -# along with this program; if not, write to the Free Software Foundation, -# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## -from spack import * - - -class Llvm(Package): - """The LLVM Project is a collection of modular and reusable compiler and - toolchain technologies. Despite its name, LLVM has little to do with - traditional virtual machines, though it does provide helpful libraries - that can be used to build them. The name "LLVM" itself is not an acronym; - it is the full name of the project. - """ - homepage = 'http://llvm.org/' - url = 'http://llvm.org/releases/3.7.0/llvm-3.7.0.src.tar.xz' - - version('3.7.0', 'b98b9495e5655a672d6cb83e1a180f8e', url='http://llvm.org/releases/3.7.0/llvm-3.7.0.src.tar.xz') - version('3.6.2', '0c1ee3597d75280dee603bae9cbf5cc2', url='http://llvm.org/releases/3.6.2/llvm-3.6.2.src.tar.xz') - version('3.5.1', '2d3d8004f38852aa679e5945b8ce0b14', url='http://llvm.org/releases/3.5.1/llvm-3.5.1.src.tar.xz') - version('3.0', 'a8e5f5f1c1adebae7b4a654c376a6005', url='http://llvm.org/releases/3.0/llvm-3.0.tar.gz') # currently required by mesa package - - depends_on('python@2.7:') - - variant('libcxx', default=False, description="Builds the LLVM Standard C++ library targeting C++11") - - ########## - # @3.7.0 - resource(name='compiler-rt', - url='http://llvm.org/releases/3.7.0/compiler-rt-3.7.0.src.tar.xz', md5='383c10affd513026f08936b5525523f5', - destination='projects', when='@3.7.0') - resource(name='openmp', - url='http://llvm.org/releases/3.7.0/openmp-3.7.0.src.tar.xz', md5='f482c86fdead50ba246a1a2b0bbf206f', - destination='projects', when='@3.7.0') - resource(name='libcxx', - url='http://llvm.org/releases/3.7.0/libcxx-3.7.0.src.tar.xz', md5='46aa5175cbe1ad42d6e9c995968e56dd', - destination='projects', placement='libcxx', when='+libcxx@3.7.0') - resource(name='libcxxabi', - url='http://llvm.org/releases/3.7.0/libcxxabi-3.7.0.src.tar.xz', md5='5aa769e2fca79fa5335cfae8f6258772', - destination='projects', placement='libcxxabi', when='+libcxx@3.7.0') - ########## - - def install(self, spec, prefix): - env['CXXFLAGS'] = self.compiler.cxx11_flag - - with working_dir('spack-build', create=True): - cmake('..', - '-DLLVM_REQUIRES_RTTI:BOOL=ON', - '-DPYTHON_EXECUTABLE:PATH=%s/bin/python' % spec['python'].prefix, - *std_cmake_args) - make() - make("install") diff --git a/var/spack/mock_packages/a/package.py b/var/spack/repos/builtin.mock/packages/a/package.py index fa63c08df0..fa63c08df0 100644 --- a/var/spack/mock_packages/a/package.py +++ b/var/spack/repos/builtin.mock/packages/a/package.py diff --git a/var/spack/mock_packages/b/package.py b/var/spack/repos/builtin.mock/packages/b/package.py index cb88aa2157..cb88aa2157 100644 --- a/var/spack/mock_packages/b/package.py +++ b/var/spack/repos/builtin.mock/packages/b/package.py diff --git a/var/spack/mock_packages/c/package.py b/var/spack/repos/builtin.mock/packages/c/package.py index f51b913fa9..f51b913fa9 100644 --- a/var/spack/mock_packages/c/package.py +++ b/var/spack/repos/builtin.mock/packages/c/package.py diff --git a/var/spack/mock_packages/callpath/package.py b/var/spack/repos/builtin.mock/packages/callpath/package.py index abc576f78f..abc576f78f 100644 --- a/var/spack/mock_packages/callpath/package.py +++ b/var/spack/repos/builtin.mock/packages/callpath/package.py diff --git a/var/spack/mock_packages/direct_mpich/package.py b/var/spack/repos/builtin.mock/packages/direct_mpich/package.py index efe7fc2afc..efe7fc2afc 100644 --- a/var/spack/mock_packages/direct_mpich/package.py +++ b/var/spack/repos/builtin.mock/packages/direct_mpich/package.py diff --git a/var/spack/mock_packages/dyninst/package.py b/var/spack/repos/builtin.mock/packages/dyninst/package.py index ea57950865..ea57950865 100644 --- a/var/spack/mock_packages/dyninst/package.py +++ b/var/spack/repos/builtin.mock/packages/dyninst/package.py diff --git a/var/spack/mock_packages/e/package.py b/var/spack/repos/builtin.mock/packages/e/package.py index 76c6b64c7f..76c6b64c7f 100644 --- a/var/spack/mock_packages/e/package.py +++ b/var/spack/repos/builtin.mock/packages/e/package.py diff --git a/var/spack/mock_packages/fake/package.py b/var/spack/repos/builtin.mock/packages/fake/package.py index 5f81ef20fc..5f81ef20fc 100644 --- a/var/spack/mock_packages/fake/package.py +++ b/var/spack/repos/builtin.mock/packages/fake/package.py diff --git a/var/spack/mock_packages/git-test/package.py b/var/spack/repos/builtin.mock/packages/git-test/package.py index 689185463c..689185463c 100644 --- a/var/spack/mock_packages/git-test/package.py +++ b/var/spack/repos/builtin.mock/packages/git-test/package.py diff --git a/var/spack/mock_packages/hg-test/package.py b/var/spack/repos/builtin.mock/packages/hg-test/package.py index 462f1e4c3a..462f1e4c3a 100644 --- a/var/spack/mock_packages/hg-test/package.py +++ b/var/spack/repos/builtin.mock/packages/hg-test/package.py diff --git a/var/spack/mock_packages/indirect_mpich/package.py b/var/spack/repos/builtin.mock/packages/indirect_mpich/package.py index 0b1773a27b..0b1773a27b 100644 --- a/var/spack/mock_packages/indirect_mpich/package.py +++ b/var/spack/repos/builtin.mock/packages/indirect_mpich/package.py diff --git a/var/spack/mock_packages/libdwarf/package.py b/var/spack/repos/builtin.mock/packages/libdwarf/package.py index e486a5de03..e486a5de03 100644 --- a/var/spack/mock_packages/libdwarf/package.py +++ b/var/spack/repos/builtin.mock/packages/libdwarf/package.py diff --git a/var/spack/mock_packages/libelf/package.py b/var/spack/repos/builtin.mock/packages/libelf/package.py index 5e5b0b7143..5e5b0b7143 100644 --- a/var/spack/mock_packages/libelf/package.py +++ b/var/spack/repos/builtin.mock/packages/libelf/package.py diff --git a/var/spack/mock_packages/mpich/package.py b/var/spack/repos/builtin.mock/packages/mpich/package.py index 55bf97f2cf..55bf97f2cf 100644 --- a/var/spack/mock_packages/mpich/package.py +++ b/var/spack/repos/builtin.mock/packages/mpich/package.py diff --git a/var/spack/mock_packages/mpich2/package.py b/var/spack/repos/builtin.mock/packages/mpich2/package.py index 90f969b898..90f969b898 100644 --- a/var/spack/mock_packages/mpich2/package.py +++ b/var/spack/repos/builtin.mock/packages/mpich2/package.py diff --git a/var/spack/mock_packages/mpileaks/package.py b/var/spack/repos/builtin.mock/packages/mpileaks/package.py index 9a18c5e1f2..9a18c5e1f2 100644 --- a/var/spack/mock_packages/mpileaks/package.py +++ b/var/spack/repos/builtin.mock/packages/mpileaks/package.py diff --git a/var/spack/mock_packages/multimethod/package.py b/var/spack/repos/builtin.mock/packages/multimethod/package.py index ea103fe175..ea103fe175 100644 --- a/var/spack/mock_packages/multimethod/package.py +++ b/var/spack/repos/builtin.mock/packages/multimethod/package.py diff --git a/var/spack/mock_packages/netlib-blas/package.py b/var/spack/repos/builtin.mock/packages/netlib-blas/package.py index 39f2c92ae5..39f2c92ae5 100644 --- a/var/spack/mock_packages/netlib-blas/package.py +++ b/var/spack/repos/builtin.mock/packages/netlib-blas/package.py diff --git a/var/spack/mock_packages/netlib-lapack/package.py b/var/spack/repos/builtin.mock/packages/netlib-lapack/package.py index 331844e544..331844e544 100644 --- a/var/spack/mock_packages/netlib-lapack/package.py +++ b/var/spack/repos/builtin.mock/packages/netlib-lapack/package.py diff --git a/var/spack/mock_packages/openblas/package.py b/var/spack/repos/builtin.mock/packages/openblas/package.py index c7771b92a3..c7771b92a3 100644 --- a/var/spack/mock_packages/openblas/package.py +++ b/var/spack/repos/builtin.mock/packages/openblas/package.py diff --git a/var/spack/mock_packages/optional-dep-test-2/package.py b/var/spack/repos/builtin.mock/packages/optional-dep-test-2/package.py index ef0587588e..ef0587588e 100644 --- a/var/spack/mock_packages/optional-dep-test-2/package.py +++ b/var/spack/repos/builtin.mock/packages/optional-dep-test-2/package.py diff --git a/var/spack/mock_packages/optional-dep-test-3/package.py b/var/spack/repos/builtin.mock/packages/optional-dep-test-3/package.py index e6cb3bd6e7..e6cb3bd6e7 100644 --- a/var/spack/mock_packages/optional-dep-test-3/package.py +++ b/var/spack/repos/builtin.mock/packages/optional-dep-test-3/package.py diff --git a/var/spack/mock_packages/optional-dep-test/package.py b/var/spack/repos/builtin.mock/packages/optional-dep-test/package.py index bb57576ca9..bb57576ca9 100644 --- a/var/spack/mock_packages/optional-dep-test/package.py +++ b/var/spack/repos/builtin.mock/packages/optional-dep-test/package.py diff --git a/var/spack/mock_packages/svn-test/package.py b/var/spack/repos/builtin.mock/packages/svn-test/package.py index ba4d5522b4..ba4d5522b4 100644 --- a/var/spack/mock_packages/svn-test/package.py +++ b/var/spack/repos/builtin.mock/packages/svn-test/package.py diff --git a/var/spack/mock_packages/trivial_install_test_package/package.py b/var/spack/repos/builtin.mock/packages/trivial_install_test_package/package.py index fec5849e67..fec5849e67 100644 --- a/var/spack/mock_packages/trivial_install_test_package/package.py +++ b/var/spack/repos/builtin.mock/packages/trivial_install_test_package/package.py diff --git a/var/spack/mock_packages/zmpi/package.py b/var/spack/repos/builtin.mock/packages/zmpi/package.py index 201fac2fbf..201fac2fbf 100644 --- a/var/spack/mock_packages/zmpi/package.py +++ b/var/spack/repos/builtin.mock/packages/zmpi/package.py diff --git a/var/spack/repos/builtin.mock/repo.yaml b/var/spack/repos/builtin.mock/repo.yaml new file mode 100644 index 0000000000..30b068da13 --- /dev/null +++ b/var/spack/repos/builtin.mock/repo.yaml @@ -0,0 +1,2 @@ +repo: + namespace: builtin.mock diff --git a/var/spack/packages/ImageMagick/package.py b/var/spack/repos/builtin/packages/ImageMagick/package.py index 753ea80ca6..753ea80ca6 100644 --- a/var/spack/packages/ImageMagick/package.py +++ b/var/spack/repos/builtin/packages/ImageMagick/package.py diff --git a/var/spack/packages/Mitos/package.py b/var/spack/repos/builtin/packages/Mitos/package.py index ea131872dd..ea131872dd 100644 --- a/var/spack/packages/Mitos/package.py +++ b/var/spack/repos/builtin/packages/Mitos/package.py diff --git a/var/spack/repos/builtin/packages/R/package.py b/var/spack/repos/builtin/packages/R/package.py new file mode 100644 index 0000000000..2471dff09b --- /dev/null +++ b/var/spack/repos/builtin/packages/R/package.py @@ -0,0 +1,49 @@ +from spack import * + + +class R(Package): + """ + R is 'GNU S', a freely available language and environment for statistical computing and graphics which provides a + wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series + analysis, classification, clustering, etc. Please consult the R project homepage for further information. + """ + homepage = "https://www.r-project.org" + url = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz" + + version('3.2.3', '1ba3dac113efab69e706902810cc2970') + version('3.2.2', '57cef5c2e210a5454da1979562a10e5b') + version('3.2.1', 'c2aac8b40f84e08e7f8c9068de9239a3') + version('3.2.0', '66fa17ad457d7e618191aa0f52fc402e') + version('3.1.3', '53a85b884925aa6b5811dfc361d73fc4') + version('3.1.2', '3af29ec06704cbd08d4ba8d69250ae74') + + variant('external-lapack', default=False, description='Links to externally installed BLAS/LAPACK') + + # Virtual dependencies + depends_on('blas', when='+external-lapack') + depends_on('lapack', when='+external-lapack') + + # Concrete dependencies + depends_on('readline') + depends_on('ncurses') + depends_on('icu') + depends_on('glib') + depends_on('zlib') + depends_on('libtiff') + depends_on('jpeg') + depends_on('cairo') + depends_on('pango') + depends_on('freetype') + depends_on('tcl') + depends_on('tk') + + def install(self, spec, prefix): + options = ['--prefix=%s' % prefix, + '--enable-R-shlib', + '--enable-BLAS-shlib'] + if '+external-lapack' in spec: + options.extend(['--with-blas', '--with-lapack']) + + configure(*options) + make() + make('install') diff --git a/var/spack/packages/SAMRAI/no-tool-build.patch b/var/spack/repos/builtin/packages/SAMRAI/no-tool-build.patch index 1adf0cf721..1adf0cf721 100644 --- a/var/spack/packages/SAMRAI/no-tool-build.patch +++ b/var/spack/repos/builtin/packages/SAMRAI/no-tool-build.patch diff --git a/var/spack/packages/SAMRAI/package.py b/var/spack/repos/builtin/packages/SAMRAI/package.py index 2c3b9180af..2c3b9180af 100644 --- a/var/spack/packages/SAMRAI/package.py +++ b/var/spack/repos/builtin/packages/SAMRAI/package.py diff --git a/var/spack/packages/activeharmony/package.py b/var/spack/repos/builtin/packages/activeharmony/package.py index 45dcc7c0e8..45dcc7c0e8 100644 --- a/var/spack/packages/activeharmony/package.py +++ b/var/spack/repos/builtin/packages/activeharmony/package.py diff --git a/var/spack/packages/adept-utils/package.py b/var/spack/repos/builtin/packages/adept-utils/package.py index fb59576c21..fb59576c21 100644 --- a/var/spack/packages/adept-utils/package.py +++ b/var/spack/repos/builtin/packages/adept-utils/package.py diff --git a/var/spack/packages/apex/package.py b/var/spack/repos/builtin/packages/apex/package.py index 8769d97056..8769d97056 100644 --- a/var/spack/packages/apex/package.py +++ b/var/spack/repos/builtin/packages/apex/package.py diff --git a/var/spack/packages/arpack/package.py b/var/spack/repos/builtin/packages/arpack/package.py index 8c67c536f3..8c67c536f3 100644 --- a/var/spack/packages/arpack/package.py +++ b/var/spack/repos/builtin/packages/arpack/package.py diff --git a/var/spack/packages/asciidoc/package.py b/var/spack/repos/builtin/packages/asciidoc/package.py index 828f3b3f4f..828f3b3f4f 100644 --- a/var/spack/packages/asciidoc/package.py +++ b/var/spack/repos/builtin/packages/asciidoc/package.py diff --git a/var/spack/packages/atk/package.py b/var/spack/repos/builtin/packages/atk/package.py index 769805b227..769805b227 100644 --- a/var/spack/packages/atk/package.py +++ b/var/spack/repos/builtin/packages/atk/package.py diff --git a/var/spack/packages/atlas/package.py b/var/spack/repos/builtin/packages/atlas/package.py index fc683363a7..fc683363a7 100644 --- a/var/spack/packages/atlas/package.py +++ b/var/spack/repos/builtin/packages/atlas/package.py diff --git a/var/spack/packages/atop/package.py b/var/spack/repos/builtin/packages/atop/package.py index 346ab0763c..346ab0763c 100644 --- a/var/spack/packages/atop/package.py +++ b/var/spack/repos/builtin/packages/atop/package.py diff --git a/var/spack/packages/autoconf/package.py b/var/spack/repos/builtin/packages/autoconf/package.py index 5189faf054..5189faf054 100644 --- a/var/spack/packages/autoconf/package.py +++ b/var/spack/repos/builtin/packages/autoconf/package.py diff --git a/var/spack/packages/automaded/package.py b/var/spack/repos/builtin/packages/automaded/package.py index e0bc7efb8b..e0bc7efb8b 100644 --- a/var/spack/packages/automaded/package.py +++ b/var/spack/repos/builtin/packages/automaded/package.py diff --git a/var/spack/packages/automake/package.py b/var/spack/repos/builtin/packages/automake/package.py index 9115822730..9115822730 100644 --- a/var/spack/packages/automake/package.py +++ b/var/spack/repos/builtin/packages/automake/package.py diff --git a/var/spack/packages/bear/package.py b/var/spack/repos/builtin/packages/bear/package.py index 0d4436fccc..0d4436fccc 100644 --- a/var/spack/packages/bear/package.py +++ b/var/spack/repos/builtin/packages/bear/package.py diff --git a/var/spack/packages/bib2xhtml/package.py b/var/spack/repos/builtin/packages/bib2xhtml/package.py index 7f8e0cfe5a..7f8e0cfe5a 100644 --- a/var/spack/packages/bib2xhtml/package.py +++ b/var/spack/repos/builtin/packages/bib2xhtml/package.py diff --git a/var/spack/packages/binutils/binutilskrell-2.24.patch b/var/spack/repos/builtin/packages/binutils/binutilskrell-2.24.patch index f48291a6c9..f48291a6c9 100644 --- a/var/spack/packages/binutils/binutilskrell-2.24.patch +++ b/var/spack/repos/builtin/packages/binutils/binutilskrell-2.24.patch diff --git a/var/spack/repos/builtin/packages/binutils/cr16.patch b/var/spack/repos/builtin/packages/binutils/cr16.patch new file mode 100644 index 0000000000..2727c70b23 --- /dev/null +++ b/var/spack/repos/builtin/packages/binutils/cr16.patch @@ -0,0 +1,26 @@ +--- old/opcodes/cr16-dis.c 2014-10-14 03:32:04.000000000 -0400 ++++ new/opcodes/cr16-dis.c 2016-01-14 21:54:26.000000000 -0500 +@@ -78,7 +78,7 @@ + REG_ARG_TYPE; + + /* Current opcode table entry we're disassembling. */ +-const inst *instruction; ++extern const inst *instruction; + /* Current instruction we're disassembling. */ + ins cr16_currInsn; + /* The current instruction is read into 3 consecutive words. */ +@@ -86,12 +86,12 @@ + /* Contains all words in appropriate order. */ + ULONGLONG cr16_allWords; + /* Holds the current processed argument number. */ +-int processing_argument_number; ++extern int processing_argument_number; + /* Nonzero means a IMM4 instruction. */ + int imm4flag; + /* Nonzero means the instruction's original size is + incremented (escape sequence is used). */ +-int size_changed; ++extern int size_changed; + + + /* Print the constant expression length. */ diff --git a/var/spack/packages/binutils/package.py b/var/spack/repos/builtin/packages/binutils/package.py index 123f4598f6..de04221e33 100644 --- a/var/spack/packages/binutils/package.py +++ b/var/spack/repos/builtin/packages/binutils/package.py @@ -11,8 +11,11 @@ class Binutils(Package): # Add a patch that creates binutils libiberty_pic.a which is preferred by OpenSpeedShop and cbtf-krell variant('krellpatch', default=False, description="build with openspeedshop based patch.") + variant('gold', default=True, description="build the gold linker") patch('binutilskrell-2.24.patch', when='@2.24+krellpatch') + patch('cr16.patch') + variant('libiberty', default=False, description='Also install libiberty.') def install(self, spec, prefix): @@ -26,6 +29,9 @@ class Binutils(Package): '--enable-targets=all', '--with-sysroot=/'] + if '+gold' in spec: + configure_args.append('--enable-gold') + if '+libiberty' in spec: configure_args.append('--enable-install-libiberty') diff --git a/var/spack/packages/bison/package.py b/var/spack/repos/builtin/packages/bison/package.py index 7c526fb958..7c526fb958 100644 --- a/var/spack/packages/bison/package.py +++ b/var/spack/repos/builtin/packages/bison/package.py diff --git a/var/spack/packages/boost/package.py b/var/spack/repos/builtin/packages/boost/package.py index 3427b74ad6..3427b74ad6 100644 --- a/var/spack/packages/boost/package.py +++ b/var/spack/repos/builtin/packages/boost/package.py diff --git a/var/spack/packages/bowtie2/bowtie2-2.5.patch b/var/spack/repos/builtin/packages/bowtie2/bowtie2-2.5.patch index 290be39c73..290be39c73 100644 --- a/var/spack/packages/bowtie2/bowtie2-2.5.patch +++ b/var/spack/repos/builtin/packages/bowtie2/bowtie2-2.5.patch diff --git a/var/spack/packages/bowtie2/package.py b/var/spack/repos/builtin/packages/bowtie2/package.py index 339aab6598..339aab6598 100644 --- a/var/spack/packages/bowtie2/package.py +++ b/var/spack/repos/builtin/packages/bowtie2/package.py diff --git a/var/spack/packages/boxlib/package.py b/var/spack/repos/builtin/packages/boxlib/package.py index 4f1b71132f..4f1b71132f 100644 --- a/var/spack/packages/boxlib/package.py +++ b/var/spack/repos/builtin/packages/boxlib/package.py diff --git a/var/spack/packages/bzip2/package.py b/var/spack/repos/builtin/packages/bzip2/package.py index 638ba1fa4d..638ba1fa4d 100644 --- a/var/spack/packages/bzip2/package.py +++ b/var/spack/repos/builtin/packages/bzip2/package.py diff --git a/var/spack/packages/cairo/package.py b/var/spack/repos/builtin/packages/cairo/package.py index e1ac8aaa7d..8255e869be 100644 --- a/var/spack/packages/cairo/package.py +++ b/var/spack/repos/builtin/packages/cairo/package.py @@ -14,6 +14,7 @@ class Cairo(Package): def install(self, spec, prefix): configure("--prefix=%s" % prefix, + "--disable-trace", # can cause problems with libiberty "--enable-tee") make() make("install") diff --git a/var/spack/packages/callpath/package.py b/var/spack/repos/builtin/packages/callpath/package.py index 3d2d96249e..3d2d96249e 100644 --- a/var/spack/packages/callpath/package.py +++ b/var/spack/repos/builtin/packages/callpath/package.py diff --git a/var/spack/packages/cblas/package.py b/var/spack/repos/builtin/packages/cblas/package.py index 3cfe5ee588..3cfe5ee588 100644 --- a/var/spack/packages/cblas/package.py +++ b/var/spack/repos/builtin/packages/cblas/package.py diff --git a/var/spack/packages/cbtf-argonavis/package.py b/var/spack/repos/builtin/packages/cbtf-argonavis/package.py index 7b07933911..7b07933911 100644 --- a/var/spack/packages/cbtf-argonavis/package.py +++ b/var/spack/repos/builtin/packages/cbtf-argonavis/package.py diff --git a/var/spack/packages/cbtf-krell/package.py b/var/spack/repos/builtin/packages/cbtf-krell/package.py index 9458ac113c..9458ac113c 100644 --- a/var/spack/packages/cbtf-krell/package.py +++ b/var/spack/repos/builtin/packages/cbtf-krell/package.py diff --git a/var/spack/packages/cbtf-lanl/package.py b/var/spack/repos/builtin/packages/cbtf-lanl/package.py index 2da9e8a1f7..2da9e8a1f7 100644 --- a/var/spack/packages/cbtf-lanl/package.py +++ b/var/spack/repos/builtin/packages/cbtf-lanl/package.py diff --git a/var/spack/packages/cbtf/package.py b/var/spack/repos/builtin/packages/cbtf/package.py index 52e6a07020..52e6a07020 100644 --- a/var/spack/packages/cbtf/package.py +++ b/var/spack/repos/builtin/packages/cbtf/package.py diff --git a/var/spack/repos/builtin/packages/cereal/Werror.patch b/var/spack/repos/builtin/packages/cereal/Werror.patch new file mode 100644 index 0000000000..d39eaaffdb --- /dev/null +++ b/var/spack/repos/builtin/packages/cereal/Werror.patch @@ -0,0 +1,33 @@ +--- old/sandbox/CMakeLists.txt ++++ new/sandbox/CMakeLists.txt +@@ -4,9 +4,11 @@ + add_executable(sandbox_json sandbox_json.cpp) + add_executable(sandbox_rtti sandbox_rtti.cpp) + ++if(Boost_FOUND) + add_executable(sandbox_vs sandbox_vs.cpp) + target_link_libraries(sandbox_vs sandbox_vs_dll) + include_directories(sandbox_shared_lib) ++endif(Boost_FOUND) + + if(Boost_FOUND) + add_executable(performance performance.cpp) +--- old/include/cereal/types/common.hpp ++++ new/include/cereal/types/common.hpp +@@ -106,14 +106,16 @@ + t = reinterpret_cast<typename common_detail::is_enum<T>::type const &>( value ); + } + ++#ifndef CEREAL_ENABLE_RAW_POINTER_SERIALIZATION + //! Serialization for raw pointers + /*! This exists only to throw a static_assert to let users know we don't support raw pointers. */ + template <class Archive, class T> inline + void CEREAL_SERIALIZE_FUNCTION_NAME( Archive &, T * & ) + { + static_assert(cereal::traits::detail::delay_static_assert<T>::value, + "Cereal does not support serializing raw pointers - please use a smart pointer"); + } ++#endif + + //! Serialization for C style arrays + template <class Archive, class T> inline diff --git a/var/spack/repos/builtin/packages/cereal/package.py b/var/spack/repos/builtin/packages/cereal/package.py new file mode 100644 index 0000000000..a83927456f --- /dev/null +++ b/var/spack/repos/builtin/packages/cereal/package.py @@ -0,0 +1,34 @@ +from spack import * +import shutil + +class Cereal(Package): + """cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.""" + homepage = "http://uscilab.github.io/cereal/" + url = "https://github.com/USCiLab/cereal/archive/v1.1.2.tar.gz" + + version('1.1.2', '34d4ad174acbff005c36d4d10e48cbb9') + version('1.1.1', '0ceff308c38f37d5b5f6df3927451c27') + version('1.1.0', '9f2d5f72e935c54f4c6d23e954ce699f') + version('1.0.0', 'd1bacca70a95cec0ddbff68b0871296b') + version('0.9.1', '8872d4444ff274ce6cd1ed364d0fc0ad') + + patch("Werror.patch") + + depends_on("cmake @2.6.2:") + + def install(self, spec, prefix): + # Don't use -Werror + filter_file(r'-Werror', '', 'CMakeLists.txt') + + # configure + # Boost is only used for self-tests, which we are not running (yet?) + cmake('.', '-DCMAKE_DISABLE_FIND_PACKAGE_Boost=TRUE', *std_cmake_args) + + # Build + make() + + # Install + shutil.rmtree(join_path(prefix, 'doc'), ignore_errors=True) + shutil.rmtree(join_path(prefix, 'include'), ignore_errors=True) + shutil.copytree('doc', join_path(prefix, 'doc'), symlinks=True) + shutil.copytree('include', join_path(prefix, 'include'), symlinks=True) diff --git a/var/spack/packages/cfitsio/package.py b/var/spack/repos/builtin/packages/cfitsio/package.py index ff450cb5f3..ff450cb5f3 100644 --- a/var/spack/packages/cfitsio/package.py +++ b/var/spack/repos/builtin/packages/cfitsio/package.py diff --git a/var/spack/packages/cgal/package.py b/var/spack/repos/builtin/packages/cgal/package.py index 97356433be..97356433be 100644 --- a/var/spack/packages/cgal/package.py +++ b/var/spack/repos/builtin/packages/cgal/package.py diff --git a/var/spack/packages/cgm/package.py b/var/spack/repos/builtin/packages/cgm/package.py index 05d6395c5a..05d6395c5a 100644 --- a/var/spack/packages/cgm/package.py +++ b/var/spack/repos/builtin/packages/cgm/package.py diff --git a/var/spack/packages/cityhash/package.py b/var/spack/repos/builtin/packages/cityhash/package.py index 1643cc3b42..1643cc3b42 100644 --- a/var/spack/packages/cityhash/package.py +++ b/var/spack/repos/builtin/packages/cityhash/package.py diff --git a/var/spack/packages/cleverleaf/package.py b/var/spack/repos/builtin/packages/cleverleaf/package.py index fb400b25c3..fb400b25c3 100644 --- a/var/spack/packages/cleverleaf/package.py +++ b/var/spack/repos/builtin/packages/cleverleaf/package.py diff --git a/var/spack/packages/cloog/package.py b/var/spack/repos/builtin/packages/cloog/package.py index 814a33c76c..814a33c76c 100644 --- a/var/spack/packages/cloog/package.py +++ b/var/spack/repos/builtin/packages/cloog/package.py diff --git a/var/spack/packages/cmake/package.py b/var/spack/repos/builtin/packages/cmake/package.py index 173f72742c..f67ae21ebd 100644 --- a/var/spack/packages/cmake/package.py +++ b/var/spack/repos/builtin/packages/cmake/package.py @@ -31,12 +31,12 @@ class Cmake(Package): version('2.8.10.2', '097278785da7182ec0aea8769d06860c', url = 'http://www.cmake.org/files/v2.8/cmake-2.8.10.2.tar.gz') - + version('3.0.2', 'db4c687a31444a929d2fdc36c4dfb95f', url = 'http://www.cmake.org/files/v3.0/cmake-3.0.2.tar.gz') - + version('3.4.0', 'cd3034e0a44256a0917e254167217fc8', - url = 'https://cmake.org/files/v3.4/cmake-3.4.0.tar.gz') + url = 'http://cmake.org/files/v3.4/cmake-3.4.0.tar.gz') variant('ncurses', default=True, description='Enables the build of the ncurses gui') diff --git a/var/spack/packages/coreutils/package.py b/var/spack/repos/builtin/packages/coreutils/package.py index 78c608d8eb..78c608d8eb 100644 --- a/var/spack/packages/coreutils/package.py +++ b/var/spack/repos/builtin/packages/coreutils/package.py diff --git a/var/spack/packages/cppcheck/package.py b/var/spack/repos/builtin/packages/cppcheck/package.py index 8e98f457ee..8e98f457ee 100644 --- a/var/spack/packages/cppcheck/package.py +++ b/var/spack/repos/builtin/packages/cppcheck/package.py diff --git a/var/spack/packages/cram/package.py b/var/spack/repos/builtin/packages/cram/package.py index b19422b8a8..b19422b8a8 100644 --- a/var/spack/packages/cram/package.py +++ b/var/spack/repos/builtin/packages/cram/package.py diff --git a/var/spack/packages/cscope/package.py b/var/spack/repos/builtin/packages/cscope/package.py index 9aac0f7304..9aac0f7304 100644 --- a/var/spack/packages/cscope/package.py +++ b/var/spack/repos/builtin/packages/cscope/package.py diff --git a/var/spack/packages/cube/package.py b/var/spack/repos/builtin/packages/cube/package.py index 17d388c33d..17d388c33d 100644 --- a/var/spack/packages/cube/package.py +++ b/var/spack/repos/builtin/packages/cube/package.py diff --git a/var/spack/packages/curl/package.py b/var/spack/repos/builtin/packages/curl/package.py index 9e684445c7..9e684445c7 100644 --- a/var/spack/packages/curl/package.py +++ b/var/spack/repos/builtin/packages/curl/package.py diff --git a/var/spack/packages/czmq/package.py b/var/spack/repos/builtin/packages/czmq/package.py index 0665332179..0665332179 100644 --- a/var/spack/packages/czmq/package.py +++ b/var/spack/repos/builtin/packages/czmq/package.py diff --git a/var/spack/packages/damselfly/package.py b/var/spack/repos/builtin/packages/damselfly/package.py index 96666d1abe..96666d1abe 100644 --- a/var/spack/packages/damselfly/package.py +++ b/var/spack/repos/builtin/packages/damselfly/package.py diff --git a/var/spack/packages/dbus/package.py b/var/spack/repos/builtin/packages/dbus/package.py index 294b0de54e..294b0de54e 100644 --- a/var/spack/packages/dbus/package.py +++ b/var/spack/repos/builtin/packages/dbus/package.py diff --git a/var/spack/packages/docbook-xml/package.py b/var/spack/repos/builtin/packages/docbook-xml/package.py index fce1de7deb..fce1de7deb 100644 --- a/var/spack/packages/docbook-xml/package.py +++ b/var/spack/repos/builtin/packages/docbook-xml/package.py diff --git a/var/spack/packages/doxygen/package.py b/var/spack/repos/builtin/packages/doxygen/package.py index 3d4a4e47a7..3d4a4e47a7 100644 --- a/var/spack/packages/doxygen/package.py +++ b/var/spack/repos/builtin/packages/doxygen/package.py diff --git a/var/spack/packages/dri2proto/package.py b/var/spack/repos/builtin/packages/dri2proto/package.py index 11dfa568e2..11dfa568e2 100644 --- a/var/spack/packages/dri2proto/package.py +++ b/var/spack/repos/builtin/packages/dri2proto/package.py diff --git a/var/spack/packages/dtcmp/package.py b/var/spack/repos/builtin/packages/dtcmp/package.py index 9d940583c1..9d940583c1 100644 --- a/var/spack/packages/dtcmp/package.py +++ b/var/spack/repos/builtin/packages/dtcmp/package.py diff --git a/var/spack/packages/dyninst/package.py b/var/spack/repos/builtin/packages/dyninst/package.py index 0111dcbe08..0111dcbe08 100644 --- a/var/spack/packages/dyninst/package.py +++ b/var/spack/repos/builtin/packages/dyninst/package.py diff --git a/var/spack/packages/elfutils/package.py b/var/spack/repos/builtin/packages/elfutils/package.py index 926d234584..926d234584 100644 --- a/var/spack/packages/elfutils/package.py +++ b/var/spack/repos/builtin/packages/elfutils/package.py diff --git a/var/spack/packages/expat/package.py b/var/spack/repos/builtin/packages/expat/package.py index 082da5bf0b..082da5bf0b 100644 --- a/var/spack/packages/expat/package.py +++ b/var/spack/repos/builtin/packages/expat/package.py diff --git a/var/spack/packages/extrae/package.py b/var/spack/repos/builtin/packages/extrae/package.py index 3ad4cbaf86..3ad4cbaf86 100644 --- a/var/spack/packages/extrae/package.py +++ b/var/spack/repos/builtin/packages/extrae/package.py diff --git a/var/spack/packages/exuberant-ctags/package.py b/var/spack/repos/builtin/packages/exuberant-ctags/package.py index efd2b541b2..efd2b541b2 100644 --- a/var/spack/packages/exuberant-ctags/package.py +++ b/var/spack/repos/builtin/packages/exuberant-ctags/package.py diff --git a/var/spack/packages/fftw/package.py b/var/spack/repos/builtin/packages/fftw/package.py index 4d2b964242..4d2b964242 100644 --- a/var/spack/packages/fftw/package.py +++ b/var/spack/repos/builtin/packages/fftw/package.py diff --git a/var/spack/packages/fish/package.py b/var/spack/repos/builtin/packages/fish/package.py index 1225558705..1225558705 100644 --- a/var/spack/packages/fish/package.py +++ b/var/spack/repos/builtin/packages/fish/package.py diff --git a/var/spack/packages/flex/package.py b/var/spack/repos/builtin/packages/flex/package.py index b065904912..b065904912 100644 --- a/var/spack/packages/flex/package.py +++ b/var/spack/repos/builtin/packages/flex/package.py diff --git a/var/spack/repos/builtin/packages/fltk/font.patch b/var/spack/repos/builtin/packages/fltk/font.patch new file mode 100644 index 0000000000..7706a1b4ee --- /dev/null +++ b/var/spack/repos/builtin/packages/fltk/font.patch @@ -0,0 +1,44 @@ +Index: FL/x.H +=================================================================== +--- a/FL/x.H (revision 10476) ++++ b/FL/x.H (working copy) +@@ -132,6 +132,7 @@ + XFontStruct *ptr; + }; + extern FL_EXPORT Fl_XFont_On_Demand fl_xfont; ++extern FL_EXPORT XFontStruct* fl_core_font(); + + // this object contains all X-specific stuff about a window: + // Warning: this object is highly subject to change! +Index: src/fl_font.cxx +=================================================================== +--- a/src/fl_font.cxx (revision 10476) ++++ b/src/fl_font.cxx (working copy) +@@ -55,6 +55,14 @@ + # include "fl_font_x.cxx" + #endif // WIN32 + ++#ifdef WIN32 ++#elif defined(__APPLE__) ++#else ++XFontStruct *fl_core_font() ++{ ++ return fl_xfont.value(); ++} ++#endif + + double fl_width(const char* c) { + if (c) return fl_width(c, (int) strlen(c)); +Index: src/gl_draw.cxx +=================================================================== +--- a/src/gl_draw.cxx (revision 10476) ++++ b/src/gl_draw.cxx (working copy) +@@ -84,7 +84,7 @@ + * then sorting through them at draw time (for normal X rendering) to find which one can + * render the current glyph... But for now, just use the first font in the list for GL... + */ +- XFontStruct *font = fl_xfont; ++ XFontStruct *font = fl_core_font(); + int base = font->min_char_or_byte2; + int count = font->max_char_or_byte2-base+1; + fl_fontsize->listbase = glGenLists(256); diff --git a/var/spack/repos/builtin/packages/fltk/package.py b/var/spack/repos/builtin/packages/fltk/package.py new file mode 100644 index 0000000000..0b462f83f8 --- /dev/null +++ b/var/spack/repos/builtin/packages/fltk/package.py @@ -0,0 +1,58 @@ +############################################################################## +# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Fltk(Package): + """ + FLTK (pronounced "fulltick") is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and + MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its + built-in GLUT emulation. + + FLTK is designed to be small and modular enough to be statically linked, but works fine as a shared library. FLTK + also includes an excellent UI builder called FLUID that can be used to create applications in minutes. + """ + homepage = 'http://www.fltk.org/' + url = 'http://fltk.org/pub/fltk/1.3.3/fltk-1.3.3-source.tar.gz' + + version('1.3.3', '9ccdb0d19dc104b87179bd9fd10822e3') + + patch('font.patch', when='@1.3.3') + + variant('shared', default=True, description='Enables the build of shared libraries') + + def install(self, spec, prefix): + options = ['--prefix=%s' % prefix, + '--enable-localjpeg', + '--enable-localpng', + '--enable-localzlib'] + + if '+shared' in spec: + options.append('--enable-shared') + + # FLTK needs to be built in-source + configure(*options) + make() + make('install') diff --git a/var/spack/packages/flux/package.py b/var/spack/repos/builtin/packages/flux/package.py index dc4e0594c5..dc4e0594c5 100644 --- a/var/spack/packages/flux/package.py +++ b/var/spack/repos/builtin/packages/flux/package.py diff --git a/var/spack/packages/fontconfig/package.py b/var/spack/repos/builtin/packages/fontconfig/package.py index 517c9d1813..517c9d1813 100644 --- a/var/spack/packages/fontconfig/package.py +++ b/var/spack/repos/builtin/packages/fontconfig/package.py diff --git a/var/spack/packages/freetype/package.py b/var/spack/repos/builtin/packages/freetype/package.py index 0309b858a1..0309b858a1 100644 --- a/var/spack/packages/freetype/package.py +++ b/var/spack/repos/builtin/packages/freetype/package.py diff --git a/var/spack/packages/gasnet/package.py b/var/spack/repos/builtin/packages/gasnet/package.py index 705961d1de..705961d1de 100644 --- a/var/spack/packages/gasnet/package.py +++ b/var/spack/repos/builtin/packages/gasnet/package.py diff --git a/var/spack/packages/gcc/package.py b/var/spack/repos/builtin/packages/gcc/package.py index 7ec160d595..61b16f3fd8 100644 --- a/var/spack/packages/gcc/package.py +++ b/var/spack/repos/builtin/packages/gcc/package.py @@ -48,11 +48,14 @@ class Gcc(Package): version('4.7.4', '4c696da46297de6ae77a82797d2abe28') version('4.6.4', 'b407a3d1480c11667f293bfb1f17d1a4') version('4.5.4', '27e459c2566b8209ab064570e1b378f7') + + variant('gold', default=True, description="Build the gold linker plugin for ld-based LTO") depends_on("mpfr") depends_on("gmp") depends_on("mpc") # when @4.5: - depends_on("binutils~libiberty") + depends_on("binutils~libiberty", when='~gold') + depends_on("binutils~libiberty+gold", when='+gold') # Save these until we can do optional deps. depends_on("isl", when=DEPENDS_ON_ISL_PREDICATE) diff --git a/var/spack/packages/gdb/package.py b/var/spack/repos/builtin/packages/gdb/package.py index 85ed3215e2..dd02b426b9 100644 --- a/var/spack/packages/gdb/package.py +++ b/var/spack/repos/builtin/packages/gdb/package.py @@ -6,7 +6,7 @@ # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. # LLNL-CODE-647188 # -# For details, see https://scalability-llnl.github.io/spack +# For details, see https://llnl.github.io/spack # Please also see the LICENSE file for our notice and the LGPL. # # This program is free software; you can redistribute it and/or modify diff --git a/var/spack/packages/gdk-pixbuf/package.py b/var/spack/repos/builtin/packages/gdk-pixbuf/package.py index 14a5569984..14a5569984 100644 --- a/var/spack/packages/gdk-pixbuf/package.py +++ b/var/spack/repos/builtin/packages/gdk-pixbuf/package.py diff --git a/var/spack/packages/geos/package.py b/var/spack/repos/builtin/packages/geos/package.py index 4a2657e32f..4a2657e32f 100644 --- a/var/spack/packages/geos/package.py +++ b/var/spack/repos/builtin/packages/geos/package.py diff --git a/var/spack/packages/gflags/package.py b/var/spack/repos/builtin/packages/gflags/package.py index 62dd80a094..62dd80a094 100644 --- a/var/spack/packages/gflags/package.py +++ b/var/spack/repos/builtin/packages/gflags/package.py diff --git a/var/spack/packages/ghostscript/package.py b/var/spack/repos/builtin/packages/ghostscript/package.py index 0ab49d425f..0ab49d425f 100644 --- a/var/spack/packages/ghostscript/package.py +++ b/var/spack/repos/builtin/packages/ghostscript/package.py diff --git a/var/spack/packages/git/package.py b/var/spack/repos/builtin/packages/git/package.py index ddc5078c4d..ddc5078c4d 100644 --- a/var/spack/packages/git/package.py +++ b/var/spack/repos/builtin/packages/git/package.py diff --git a/var/spack/packages/glib/package.py b/var/spack/repos/builtin/packages/glib/package.py index baca1a5a45..67ead5f941 100644 --- a/var/spack/packages/glib/package.py +++ b/var/spack/repos/builtin/packages/glib/package.py @@ -16,4 +16,4 @@ class Glib(Package): def install(self, spec, prefix): configure("--prefix=%s" % prefix) make() - make("install") + make("install", parallel=False) diff --git a/var/spack/packages/glm/package.py b/var/spack/repos/builtin/packages/glm/package.py index d00c301b4c..d00c301b4c 100644 --- a/var/spack/packages/glm/package.py +++ b/var/spack/repos/builtin/packages/glm/package.py diff --git a/var/spack/packages/global/package.py b/var/spack/repos/builtin/packages/global/package.py index e8f06516d9..e8f06516d9 100644 --- a/var/spack/packages/global/package.py +++ b/var/spack/repos/builtin/packages/global/package.py diff --git a/var/spack/packages/glog/package.py b/var/spack/repos/builtin/packages/glog/package.py index d73386b394..d73386b394 100644 --- a/var/spack/packages/glog/package.py +++ b/var/spack/repos/builtin/packages/glog/package.py diff --git a/var/spack/packages/glpk/package.py b/var/spack/repos/builtin/packages/glpk/package.py index 855f459fb3..855f459fb3 100644 --- a/var/spack/packages/glpk/package.py +++ b/var/spack/repos/builtin/packages/glpk/package.py diff --git a/var/spack/packages/gmp/package.py b/var/spack/repos/builtin/packages/gmp/package.py index fe13de3b95..fe13de3b95 100644 --- a/var/spack/packages/gmp/package.py +++ b/var/spack/repos/builtin/packages/gmp/package.py diff --git a/var/spack/repos/builtin/packages/gmsh/package.py b/var/spack/repos/builtin/packages/gmsh/package.py new file mode 100644 index 0000000000..9d759303cb --- /dev/null +++ b/var/spack/repos/builtin/packages/gmsh/package.py @@ -0,0 +1,84 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Gmsh(Package): + """ + Gmsh is a free 3D finite element grid generator with a built-in CAD engine and post-processor. Its design goal is + to provide a fast, light and user-friendly meshing tool with parametric input and advanced visualization + capabilities. Gmsh is built around four modules: geometry, mesh, solver and post-processing. The specification of + any input to these modules is done either interactively using the graphical user interface or in ASCII text files + using Gmsh's own scripting language. + """ + homepage = 'http://gmsh.info' + url = 'http://gmsh.info/src/gmsh-2.11.0-source.tgz' + + version('2.11.0', 'f15b6e7ac9ca649c9a74440e1259d0db') + + # FIXME : Misses dependencies on gmm, PetsC, TetGen + + variant('shared', default=True, description='Enables the build of shared libraries') + variant('debug', default=False, description='Builds the library in debug mode') + variant('mpi', default=False, description='Builds MPI support for parser and solver') + variant('fltk', default=False, description='Enables the build of the FLTK GUI') + variant('hdf5', default=False, description='Enables HDF5 support') + variant('compression', default=True, description='Enables IO compression through zlib') + + depends_on('blas') + depends_on('lapack') + depends_on('gmp') + depends_on('mpi', when='+mpi') + depends_on('fltk', when='+fltk') # Assumes OpenGL with GLU is already provided by the system + depends_on('hdf5', when='+hdf5') + depends_on('zlib', when='+compression') + + def install(self, spec, prefix): + + options = [] + options.extend(std_cmake_args) + + build_directory = join_path(self.stage.path, 'spack-build') + source_directory = self.stage.source_path + + if '+shared' in spec: + options.extend(['-DENABLE_BUILD_SHARED:BOOL=ON', + '-DENABLE_BUILD_DYNAMIC:BOOL=ON']) # Builds dynamic executable and installs shared library + else: + options.append('-DENABLE_BUILD_LIB:BOOL=ON') # Builds and installs static library + + if '+debug' in spec: + options.append('-DCMAKE_BUILD_TYPE:STRING=Debug') + + if '+mpi' in spec: + options.append('-DENABLE_MPI:BOOL=ON') + + if '+compression' in spec: + options.append('-DENABLE_COMPRESSED_IO:BOOL=ON') + + with working_dir(build_directory, create=True): + cmake(source_directory, *options) + make() + make('install') diff --git a/var/spack/packages/gnuplot/package.py b/var/spack/repos/builtin/packages/gnuplot/package.py index 71c09bd43d..71c09bd43d 100644 --- a/var/spack/packages/gnuplot/package.py +++ b/var/spack/repos/builtin/packages/gnuplot/package.py diff --git a/var/spack/packages/gnutls/package.py b/var/spack/repos/builtin/packages/gnutls/package.py index cf57a24a6d..cf57a24a6d 100644 --- a/var/spack/packages/gnutls/package.py +++ b/var/spack/repos/builtin/packages/gnutls/package.py diff --git a/var/spack/packages/gperf/package.py b/var/spack/repos/builtin/packages/gperf/package.py index 32551b67b4..32551b67b4 100644 --- a/var/spack/packages/gperf/package.py +++ b/var/spack/repos/builtin/packages/gperf/package.py diff --git a/var/spack/packages/gperftools/package.py b/var/spack/repos/builtin/packages/gperftools/package.py index 22b2e6c424..22b2e6c424 100644 --- a/var/spack/packages/gperftools/package.py +++ b/var/spack/repos/builtin/packages/gperftools/package.py diff --git a/var/spack/packages/graphlib/package.py b/var/spack/repos/builtin/packages/graphlib/package.py index ddac0b2b66..ddac0b2b66 100644 --- a/var/spack/packages/graphlib/package.py +++ b/var/spack/repos/builtin/packages/graphlib/package.py diff --git a/var/spack/packages/graphviz/package.py b/var/spack/repos/builtin/packages/graphviz/package.py index 7af7da1881..7af7da1881 100644 --- a/var/spack/packages/graphviz/package.py +++ b/var/spack/repos/builtin/packages/graphviz/package.py diff --git a/var/spack/packages/gsl/package.py b/var/spack/repos/builtin/packages/gsl/package.py index 789eb49d85..789eb49d85 100644 --- a/var/spack/packages/gsl/package.py +++ b/var/spack/repos/builtin/packages/gsl/package.py diff --git a/var/spack/packages/gtkplus/package.py b/var/spack/repos/builtin/packages/gtkplus/package.py index 0ebc7100de..0ebc7100de 100644 --- a/var/spack/packages/gtkplus/package.py +++ b/var/spack/repos/builtin/packages/gtkplus/package.py diff --git a/var/spack/packages/harfbuzz/package.py b/var/spack/repos/builtin/packages/harfbuzz/package.py index ed7c42a909..ed7c42a909 100644 --- a/var/spack/packages/harfbuzz/package.py +++ b/var/spack/repos/builtin/packages/harfbuzz/package.py diff --git a/var/spack/packages/hdf5/package.py b/var/spack/repos/builtin/packages/hdf5/package.py index 9a40164341..9a40164341 100644 --- a/var/spack/packages/hdf5/package.py +++ b/var/spack/repos/builtin/packages/hdf5/package.py diff --git a/var/spack/packages/hwloc/package.py b/var/spack/repos/builtin/packages/hwloc/package.py index 7ebede76a3..7ebede76a3 100644 --- a/var/spack/packages/hwloc/package.py +++ b/var/spack/repos/builtin/packages/hwloc/package.py diff --git a/var/spack/packages/hypre/package.py b/var/spack/repos/builtin/packages/hypre/package.py index 0f7f14dd89..0f7f14dd89 100644 --- a/var/spack/packages/hypre/package.py +++ b/var/spack/repos/builtin/packages/hypre/package.py diff --git a/var/spack/packages/icu/package.py b/var/spack/repos/builtin/packages/icu/package.py index f256ec5712..f256ec5712 100644 --- a/var/spack/packages/icu/package.py +++ b/var/spack/repos/builtin/packages/icu/package.py diff --git a/var/spack/packages/icu4c/package.py b/var/spack/repos/builtin/packages/icu4c/package.py index 55b44463b2..55b44463b2 100644 --- a/var/spack/packages/icu4c/package.py +++ b/var/spack/repos/builtin/packages/icu4c/package.py diff --git a/var/spack/packages/isl/package.py b/var/spack/repos/builtin/packages/isl/package.py index 836ef3ea40..836ef3ea40 100644 --- a/var/spack/packages/isl/package.py +++ b/var/spack/repos/builtin/packages/isl/package.py diff --git a/var/spack/packages/jdk/package.py b/var/spack/repos/builtin/packages/jdk/package.py index f8f5fc21bd..f8f5fc21bd 100644 --- a/var/spack/packages/jdk/package.py +++ b/var/spack/repos/builtin/packages/jdk/package.py diff --git a/var/spack/packages/jemalloc/package.py b/var/spack/repos/builtin/packages/jemalloc/package.py index 8cec9ea75b..8cec9ea75b 100644 --- a/var/spack/packages/jemalloc/package.py +++ b/var/spack/repos/builtin/packages/jemalloc/package.py diff --git a/var/spack/packages/jpeg/package.py b/var/spack/repos/builtin/packages/jpeg/package.py index 87820467db..87820467db 100644 --- a/var/spack/packages/jpeg/package.py +++ b/var/spack/repos/builtin/packages/jpeg/package.py diff --git a/var/spack/packages/judy/package.py b/var/spack/repos/builtin/packages/judy/package.py index b8d8701383..b8d8701383 100644 --- a/var/spack/packages/judy/package.py +++ b/var/spack/repos/builtin/packages/judy/package.py diff --git a/var/spack/packages/julia/gc.patch b/var/spack/repos/builtin/packages/julia/gc.patch index 6db69c6c1b..6db69c6c1b 100644 --- a/var/spack/packages/julia/gc.patch +++ b/var/spack/repos/builtin/packages/julia/gc.patch diff --git a/var/spack/packages/julia/package.py b/var/spack/repos/builtin/packages/julia/package.py index d978842d9c..6900af38e4 100644 --- a/var/spack/packages/julia/package.py +++ b/var/spack/repos/builtin/packages/julia/package.py @@ -6,6 +6,7 @@ class Julia(Package): homepage = "http://julialang.org" url = "http://github.com/JuliaLang/julia/releases/download/v0.4.2/julia-0.4.2.tar.gz" + version('0.4.3', '7b9f096798fca4bef262a64674bc2b52') version('0.4.2', 'ccfeb4f4090c8b31083f5e1ccb03eb06') patch('gc.patch') diff --git a/var/spack/packages/launchmon/package.py b/var/spack/repos/builtin/packages/launchmon/package.py index f97384a249..aec2fd6fa7 100644 --- a/var/spack/packages/launchmon/package.py +++ b/var/spack/repos/builtin/packages/launchmon/package.py @@ -37,6 +37,16 @@ class Launchmon(Package): depends_on('automake') depends_on('libtool') + + def patch(self): + # This patch makes libgcrypt compile correctly with newer gcc versions. + mf = FileFilter('tools/libgcrypt/tests/Makefile.in') + mf.filter(r'(basic_LDADD\s*=\s*.*)', r'\1 -lgpg-error') + mf.filter(r'(tsexp_LDADD\s*=\s*.*)', r'\1 -lgpg-error') + mf.filter(r'(keygen_LDADD\s*=\s*.*)', r'\1 -lgpg-error') + mf.filter(r'(benchmark_LDADD\s*=\s*.*)', r'\1 -lgpg-error') + + def install(self, spec, prefix): configure( "--prefix=" + prefix, diff --git a/var/spack/packages/launchmon/patch.lmon_install_dir b/var/spack/repos/builtin/packages/launchmon/patch.lmon_install_dir index 8a1d93fdc9..8a1d93fdc9 100644 --- a/var/spack/packages/launchmon/patch.lmon_install_dir +++ b/var/spack/repos/builtin/packages/launchmon/patch.lmon_install_dir diff --git a/var/spack/packages/lcms/package.py b/var/spack/repos/builtin/packages/lcms/package.py index a53c2f997a..a53c2f997a 100644 --- a/var/spack/packages/lcms/package.py +++ b/var/spack/repos/builtin/packages/lcms/package.py diff --git a/var/spack/packages/leveldb/package.py b/var/spack/repos/builtin/packages/leveldb/package.py index da68a9cbcb..da68a9cbcb 100644 --- a/var/spack/packages/leveldb/package.py +++ b/var/spack/repos/builtin/packages/leveldb/package.py diff --git a/var/spack/packages/libNBC/package.py b/var/spack/repos/builtin/packages/libNBC/package.py index 550568e97d..550568e97d 100644 --- a/var/spack/packages/libNBC/package.py +++ b/var/spack/repos/builtin/packages/libNBC/package.py diff --git a/var/spack/packages/libarchive/package.py b/var/spack/repos/builtin/packages/libarchive/package.py index cbd4b89cd0..cbd4b89cd0 100644 --- a/var/spack/packages/libarchive/package.py +++ b/var/spack/repos/builtin/packages/libarchive/package.py diff --git a/var/spack/packages/libcerf/package.py b/var/spack/repos/builtin/packages/libcerf/package.py index 15e87ce4fe..15e87ce4fe 100644 --- a/var/spack/packages/libcerf/package.py +++ b/var/spack/repos/builtin/packages/libcerf/package.py diff --git a/var/spack/packages/libcircle/package.py b/var/spack/repos/builtin/packages/libcircle/package.py index 3f7c996fb0..3f7c996fb0 100644 --- a/var/spack/packages/libcircle/package.py +++ b/var/spack/repos/builtin/packages/libcircle/package.py diff --git a/var/spack/packages/libdrm/package.py b/var/spack/repos/builtin/packages/libdrm/package.py index 00736b7811..00736b7811 100644 --- a/var/spack/packages/libdrm/package.py +++ b/var/spack/repos/builtin/packages/libdrm/package.py diff --git a/var/spack/packages/libdwarf/package.py b/var/spack/repos/builtin/packages/libdwarf/package.py index addb557519..addb557519 100644 --- a/var/spack/packages/libdwarf/package.py +++ b/var/spack/repos/builtin/packages/libdwarf/package.py diff --git a/var/spack/packages/libedit/package.py b/var/spack/repos/builtin/packages/libedit/package.py index bcd5212b9e..bcd5212b9e 100644 --- a/var/spack/packages/libedit/package.py +++ b/var/spack/repos/builtin/packages/libedit/package.py diff --git a/var/spack/packages/libelf/package.py b/var/spack/repos/builtin/packages/libelf/package.py index 29bc21b65c..29bc21b65c 100644 --- a/var/spack/packages/libelf/package.py +++ b/var/spack/repos/builtin/packages/libelf/package.py diff --git a/var/spack/packages/libevent/package.py b/var/spack/repos/builtin/packages/libevent/package.py index 11b1083d67..11b1083d67 100644 --- a/var/spack/packages/libevent/package.py +++ b/var/spack/repos/builtin/packages/libevent/package.py diff --git a/var/spack/packages/libffi/package.py b/var/spack/repos/builtin/packages/libffi/package.py index acec031717..acec031717 100644 --- a/var/spack/packages/libffi/package.py +++ b/var/spack/repos/builtin/packages/libffi/package.py diff --git a/var/spack/packages/libgcrypt/package.py b/var/spack/repos/builtin/packages/libgcrypt/package.py index 1d0a57f317..1d0a57f317 100644 --- a/var/spack/packages/libgcrypt/package.py +++ b/var/spack/repos/builtin/packages/libgcrypt/package.py diff --git a/var/spack/packages/libgd/package.py b/var/spack/repos/builtin/packages/libgd/package.py index d920957ef1..d920957ef1 100644 --- a/var/spack/packages/libgd/package.py +++ b/var/spack/repos/builtin/packages/libgd/package.py diff --git a/var/spack/packages/libgpg-error/package.py b/var/spack/repos/builtin/packages/libgpg-error/package.py index 6c1d1a10a7..6c1d1a10a7 100644 --- a/var/spack/packages/libgpg-error/package.py +++ b/var/spack/repos/builtin/packages/libgpg-error/package.py diff --git a/var/spack/packages/libjpeg-turbo/package.py b/var/spack/repos/builtin/packages/libjpeg-turbo/package.py index 07ee183947..07ee183947 100644 --- a/var/spack/packages/libjpeg-turbo/package.py +++ b/var/spack/repos/builtin/packages/libjpeg-turbo/package.py diff --git a/var/spack/packages/libjson-c/package.py b/var/spack/repos/builtin/packages/libjson-c/package.py index c0801cce9c..c0801cce9c 100644 --- a/var/spack/packages/libjson-c/package.py +++ b/var/spack/repos/builtin/packages/libjson-c/package.py diff --git a/var/spack/packages/libmng/package.py b/var/spack/repos/builtin/packages/libmng/package.py index e5336ea2c2..e5336ea2c2 100644 --- a/var/spack/packages/libmng/package.py +++ b/var/spack/repos/builtin/packages/libmng/package.py diff --git a/var/spack/packages/libmonitor/libmonitorkrell-0000.patch b/var/spack/repos/builtin/packages/libmonitor/libmonitorkrell-0000.patch index 3a90106850..3a90106850 100644 --- a/var/spack/packages/libmonitor/libmonitorkrell-0000.patch +++ b/var/spack/repos/builtin/packages/libmonitor/libmonitorkrell-0000.patch diff --git a/var/spack/packages/libmonitor/libmonitorkrell-0001.patch b/var/spack/repos/builtin/packages/libmonitor/libmonitorkrell-0001.patch index 85d69595c0..85d69595c0 100644 --- a/var/spack/packages/libmonitor/libmonitorkrell-0001.patch +++ b/var/spack/repos/builtin/packages/libmonitor/libmonitorkrell-0001.patch diff --git a/var/spack/packages/libmonitor/libmonitorkrell-0002.patch b/var/spack/repos/builtin/packages/libmonitor/libmonitorkrell-0002.patch index 514dfdf13e..514dfdf13e 100644 --- a/var/spack/packages/libmonitor/libmonitorkrell-0002.patch +++ b/var/spack/repos/builtin/packages/libmonitor/libmonitorkrell-0002.patch diff --git a/var/spack/packages/libmonitor/package.py b/var/spack/repos/builtin/packages/libmonitor/package.py index eecf1963e3..eecf1963e3 100644 --- a/var/spack/packages/libmonitor/package.py +++ b/var/spack/repos/builtin/packages/libmonitor/package.py diff --git a/var/spack/packages/libpciaccess/package.py b/var/spack/repos/builtin/packages/libpciaccess/package.py index 0c0847d323..0c0847d323 100644 --- a/var/spack/packages/libpciaccess/package.py +++ b/var/spack/repos/builtin/packages/libpciaccess/package.py diff --git a/var/spack/packages/libpng/package.py b/var/spack/repos/builtin/packages/libpng/package.py index e02b08663e..e02b08663e 100644 --- a/var/spack/packages/libpng/package.py +++ b/var/spack/repos/builtin/packages/libpng/package.py diff --git a/var/spack/packages/libsodium/package.py b/var/spack/repos/builtin/packages/libsodium/package.py index 1c8a16d998..1c8a16d998 100644 --- a/var/spack/packages/libsodium/package.py +++ b/var/spack/repos/builtin/packages/libsodium/package.py diff --git a/var/spack/packages/libtiff/package.py b/var/spack/repos/builtin/packages/libtiff/package.py index 63c6704cb8..63c6704cb8 100644 --- a/var/spack/packages/libtiff/package.py +++ b/var/spack/repos/builtin/packages/libtiff/package.py diff --git a/var/spack/packages/libtool/package.py b/var/spack/repos/builtin/packages/libtool/package.py index a07daf9781..82a54953b2 100644 --- a/var/spack/packages/libtool/package.py +++ b/var/spack/repos/builtin/packages/libtool/package.py @@ -5,6 +5,7 @@ class Libtool(Package): homepage = "https://www.gnu.org/software/libtool/" url = "http://ftpmirror.gnu.org/libtool/libtool-2.4.2.tar.gz" + version('2.4.6' , 'addf44b646ddb4e3919805aa88fa7c5e') version('2.4.2' , 'd2f3b7d4627e69e13514a40e72a24d50') def install(self, spec, prefix): diff --git a/var/spack/packages/libunwind/package.py b/var/spack/repos/builtin/packages/libunwind/package.py index 6f162f7b08..6f162f7b08 100644 --- a/var/spack/packages/libunwind/package.py +++ b/var/spack/repos/builtin/packages/libunwind/package.py diff --git a/var/spack/packages/libuuid/package.py b/var/spack/repos/builtin/packages/libuuid/package.py index 373c5bfcac..373c5bfcac 100644 --- a/var/spack/packages/libuuid/package.py +++ b/var/spack/repos/builtin/packages/libuuid/package.py diff --git a/var/spack/packages/libxcb/package.py b/var/spack/repos/builtin/packages/libxcb/package.py index 16a5525c0d..1dd5954c99 100644 --- a/var/spack/packages/libxcb/package.py +++ b/var/spack/repos/builtin/packages/libxcb/package.py @@ -1,9 +1,9 @@ from spack import * class Libxcb(Package): - """The X protocol C-language Binding (XCB) is a replacement - for Xlib featuring a small footprint, latency hiding, direct - access to the protocol, improved threading support, and + """The X protocol C-language Binding (XCB) is a replacement + for Xlib featuring a small footprint, latency hiding, direct + access to the protocol, improved threading support, and extensibility.""" homepage = "http://xcb.freedesktop.org/" @@ -14,6 +14,10 @@ class Libxcb(Package): depends_on("python") depends_on("xcb-proto") + def patch(self): + filter_file('typedef struct xcb_auth_info_t {', 'typedef struct {', 'src/xcb.h') + + def install(self, spec, prefix): configure("--prefix=%s" % prefix) diff --git a/var/spack/packages/libxml2/package.py b/var/spack/repos/builtin/packages/libxml2/package.py index 134e596963..134e596963 100644 --- a/var/spack/packages/libxml2/package.py +++ b/var/spack/repos/builtin/packages/libxml2/package.py diff --git a/var/spack/packages/libxshmfence/package.py b/var/spack/repos/builtin/packages/libxshmfence/package.py index 3aa2448b46..3aa2448b46 100644 --- a/var/spack/packages/libxshmfence/package.py +++ b/var/spack/repos/builtin/packages/libxshmfence/package.py diff --git a/var/spack/packages/libxslt/package.py b/var/spack/repos/builtin/packages/libxslt/package.py index f97332d020..f97332d020 100644 --- a/var/spack/packages/libxslt/package.py +++ b/var/spack/repos/builtin/packages/libxslt/package.py diff --git a/var/spack/packages/llvm-lld/package.py b/var/spack/repos/builtin/packages/llvm-lld/package.py index cb91aa22a5..cb91aa22a5 100644 --- a/var/spack/packages/llvm-lld/package.py +++ b/var/spack/repos/builtin/packages/llvm-lld/package.py diff --git a/var/spack/repos/builtin/packages/llvm/package.py b/var/spack/repos/builtin/packages/llvm/package.py new file mode 100644 index 0000000000..a2b2c6eccc --- /dev/null +++ b/var/spack/repos/builtin/packages/llvm/package.py @@ -0,0 +1,218 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by David Beckingsale, david@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * +import os, shutil + + +class Llvm(Package): + """The LLVM Project is a collection of modular and reusable compiler and + toolchain technologies. Despite its name, LLVM has little to do with + traditional virtual machines, though it does provide helpful libraries + that can be used to build them. The name "LLVM" itself is not an acronym; + it is the full name of the project. + """ + homepage = 'http://llvm.org/' + url = 'http://llvm.org/releases/3.7.0/llvm-3.7.0.src.tar.xz' + + version('3.0', 'a8e5f5f1c1adebae7b4a654c376a6005', url='http://llvm.org/releases/3.0/llvm-3.0.tar.gz') # currently required by mesa package + + variant('debug', default=False, description="Build a debug version of LLVM, this increases binary size by an order of magnitude, make sure you have 20-30gb of space available to build this") + variant('clang', default=True, description="Build the LLVM C/C++/Objective-C compiler frontend") + variant('lldb', default=True, description="Build the LLVM debugger") + variant('internal_unwind', default=True, description="Build the libcxxabi libunwind") + variant('polly', default=True, description="Build the LLVM polyhedral optimization plugin, only builds for 3.7.0+") + variant('libcxx', default=True, description="Build the LLVM C++ standard library") + variant('compiler-rt', default=True, description="Build the LLVM compiler runtime, including sanitizers") + variant('gold', default=True, description="Add support for LTO with the gold linker plugin") + + + # Build dependency + depends_on('cmake @2.8.12.2:') + + # Universal dependency + depends_on('python@2.7:') + + # lldb dependencies + depends_on('ncurses', when='+lldb') + depends_on('swig', when='+lldb') + depends_on('libedit', when='+lldb') + + # gold support + depends_on('binutils+gold', when='+gold') + + # polly plugin + depends_on('gmp', when='@:3.6.999 +polly') + depends_on('isl', when='@:3.6.999 +polly') + + base_url = 'http://llvm.org/releases/%%(version)s/%(pkg)s-%%(version)s.src.tar.xz' + llvm_url = base_url % { 'pkg' : 'llvm'} + + resources = { + 'compiler-rt' : { + 'url' : base_url % { 'pkg' : 'compiler-rt'}, + 'destination' : 'projects', + 'placement' : 'compiler-rt', + }, + 'openmp' : { + 'url' : base_url % { 'pkg' : 'openmp'}, + 'destination' : 'projects', + 'placement' : 'openmp', + }, + 'libcxx' : { + 'url' : base_url % { 'pkg' : 'libcxx'}, + 'destination' : 'projects', + 'placement' : 'libcxx', + }, + 'libcxxabi' : { + 'url' : base_url % { 'pkg' : 'libcxxabi'}, + 'destination' : 'projects', + 'placement' : 'libcxxabi', + }, + 'clang' : { + 'url' : base_url % { 'pkg' : 'cfe'}, + 'destination' : 'tools', + 'placement' : 'clang', + }, + 'clang-tools-extra' : { + 'url' : base_url % { 'pkg' : 'clang-tools-extra'}, + 'destination' : 'tools/clang/tools', + 'placement' : 'extra', + }, + 'lldb' : { + 'url' : base_url % { 'pkg' : 'lldb'}, + 'destination' : 'tools', + 'placement' : 'lldb', + }, + 'polly' : { + 'url' : base_url % { 'pkg' : 'polly'}, + 'destination' : 'tools', + 'placement' : 'polly', + }, + 'llvm-libunwind' : { + 'url' : base_url % { 'pkg' : 'libunwind'}, + 'destination' : 'projects', + 'placement' : 'libunwind', + }, + } + releases = [ + { + 'version' : '3.7.0', + 'md5':'b98b9495e5655a672d6cb83e1a180f8e', + 'resources' : { + 'compiler-rt' : '383c10affd513026f08936b5525523f5', + 'openmp' : 'f482c86fdead50ba246a1a2b0bbf206f', + 'polly' : '32f93ffc9cc7e042df22089761558f8b', + 'libcxx' : '46aa5175cbe1ad42d6e9c995968e56dd', + 'libcxxabi' : '5aa769e2fca79fa5335cfae8f6258772', + 'clang' : '8f9d27335e7331cf0a4711e952f21f01', + 'clang-tools-extra' : 'd5a87dacb65d981a427a536f6964642e', + 'lldb' : 'e5931740400d1dc3e7db4c7ba2ceff68', + 'llvm-libunwind' : '9a75392eb7eb8ed5c0840007e212baf5', + } + }, + { + 'version' : '3.6.2', + 'md5':'0c1ee3597d75280dee603bae9cbf5cc2', + 'resources' : { + 'compiler-rt' : 'e3bc4eb7ba8c39a6fe90d6c988927f3c', + 'openmp' : '65dd5863b9b270960a96817e9152b123', + 'libcxx' : '22214c90697636ef960a49aef7c1823a', + 'libcxxabi' : '17518e361e4e228f193dd91e8ef54ba2', + 'clang' : 'ff862793682f714bb7862325b9c06e20', + 'clang-tools-extra' : '3ebc1dc41659fcec3db1b47d81575e06', + 'lldb' : '51e5eb552f777b950bb0ff326e60d5f0', + } + }, + { + 'version' : '3.5.1', + 'md5':'2d3d8004f38852aa679e5945b8ce0b14', + 'resources' : { + 'compiler-rt' : 'd626cfb8a9712cb92b820798ab5bc1f8', + 'openmp' : '121ddb10167d7fc38b1f7e4b029cf059', + 'libcxx' : '406f09b1dab529f3f7879f4d548329d2', + 'libcxxabi' : 'b22c707e8d474a99865ad3c521c3d464', + 'clang' : '93f9532f8f7e6f1d8e5c1116907051cb', + 'clang-tools-extra' : 'f13f31ed3038acadc6fa63fef812a246', + 'lldb' : 'cc5ea8a414c62c33e760517f8929a204', + } + }, + ] + + for release in releases: + version(release['version'], release['md5'], url=llvm_url % release) + + for name, md5 in release['resources'].items(): + resource(name=name, + url=resources[name]['url'] % release, + md5=md5, + destination=resources[name]['destination'], + when='@%(version)s' % release, + placement=resources[name].get('placement', None)) + + def install(self, spec, prefix): + env['CXXFLAGS'] = self.compiler.cxx11_flag + cmake_args = [ arg for arg in std_cmake_args if 'BUILD_TYPE' not in arg ] + + build_type = 'RelWithDebInfo' if '+debug' in spec else 'Release' + cmake_args.extend([ + '..', + '-DCMAKE_BUILD_TYPE=' + build_type, + '-DLLVM_REQUIRES_RTTI:BOOL=ON', + '-DCLANG_DEFAULT_OPENMP_RUNTIME:STRING=libomp', + '-DPYTHON_EXECUTABLE:PATH=%s/bin/python' % spec['python'].prefix ]) + + if '+gold' in spec: + cmake_args.append('-DLLVM_BINUTILS_INCDIR=' + os.path.join( spec['binutils'].prefix, 'include')) + if '+polly' in spec: + cmake_args.append('-DLINK_POLLY_INTO_TOOLS:Bool=ON') + else: + cmake_args.append('-DLLVM_EXTERNAL_POLLY_BUILD:Bool=OFF') + + if '+clang' not in spec: + cmake_args.append('-DLLVM_EXTERNAL_CLANG_BUILD:Bool=OFF') + if '+lldb' not in spec: + cmake_args.append('-DLLVM_EXTERNAL_LLDB_BUILD:Bool=OFF') + if '+internal_unwind' not in spec: + cmake_args.append('-DLLVM_EXTERNAL_LIBUNWIND_BUILD:Bool=OFF') + if '+libcxx' not in spec: + cmake_args.append('-DLLVM_EXTERNAL_LIBCXX_BUILD:Bool=OFF') + cmake_args.append('-DLLVM_EXTERNAL_LIBCXXABI_BUILD:Bool=OFF') + if '+compiler-rt' not in spec: + cmake_args.append('-DLLVM_EXTERNAL_COMPILER_RT_BUILD:Bool=OFF') + + if '+clang' not in spec: + if '+clang_extra' in spec: + raise SpackException('The clang_extra variant requires the clang variant to be selected') + if '+lldb' in spec: + raise SpackException('The lldb variant requires the clang variant to be selected') + + with working_dir('spack-build', create=True): + cmake(*cmake_args) + make() + make("install") + query_path = os.path.join('bin', 'clang-query') + # Manually install clang-query, because llvm doesn't... + if os.path.exists(query_path): + shutil.copy(query_path, os.path.join(prefix, 'bin')) diff --git a/var/spack/packages/lmdb/package.py b/var/spack/repos/builtin/packages/lmdb/package.py index 875b8100c5..875b8100c5 100644 --- a/var/spack/packages/lmdb/package.py +++ b/var/spack/repos/builtin/packages/lmdb/package.py diff --git a/var/spack/packages/lmod/package.py b/var/spack/repos/builtin/packages/lmod/package.py index d642594f92..d642594f92 100644 --- a/var/spack/packages/lmod/package.py +++ b/var/spack/repos/builtin/packages/lmod/package.py diff --git a/var/spack/packages/lua/package.py b/var/spack/repos/builtin/packages/lua/package.py index ca8cfc5365..ca8cfc5365 100644 --- a/var/spack/packages/lua/package.py +++ b/var/spack/repos/builtin/packages/lua/package.py diff --git a/var/spack/packages/lwgrp/package.py b/var/spack/repos/builtin/packages/lwgrp/package.py index 5963382b92..5963382b92 100644 --- a/var/spack/packages/lwgrp/package.py +++ b/var/spack/repos/builtin/packages/lwgrp/package.py diff --git a/var/spack/packages/lwm2/package.py b/var/spack/repos/builtin/packages/lwm2/package.py index 31afff8816..31afff8816 100644 --- a/var/spack/packages/lwm2/package.py +++ b/var/spack/repos/builtin/packages/lwm2/package.py diff --git a/var/spack/packages/matio/package.py b/var/spack/repos/builtin/packages/matio/package.py index 12cfb80926..12cfb80926 100644 --- a/var/spack/packages/matio/package.py +++ b/var/spack/repos/builtin/packages/matio/package.py diff --git a/var/spack/packages/mbedtls/package.py b/var/spack/repos/builtin/packages/mbedtls/package.py index 7745522956..3da00cf417 100644 --- a/var/spack/packages/mbedtls/package.py +++ b/var/spack/repos/builtin/packages/mbedtls/package.py @@ -13,6 +13,8 @@ class Mbedtls(Package): version('2.1.3' , '7eb4cf1dfa68578a2c8dbd0b6fa752dd') version('1.3.16', '4144d7320c691f721aeb9e67a1bc38e0') + depends_on('cmake') + def install(self, spec, prefix): cmake('.', *std_cmake_args) diff --git a/var/spack/packages/memaxes/package.py b/var/spack/repos/builtin/packages/memaxes/package.py index 4b1da558a2..4b1da558a2 100644 --- a/var/spack/packages/memaxes/package.py +++ b/var/spack/repos/builtin/packages/memaxes/package.py diff --git a/var/spack/packages/mesa/package.py b/var/spack/repos/builtin/packages/mesa/package.py index 62da8c993b..62da8c993b 100644 --- a/var/spack/packages/mesa/package.py +++ b/var/spack/repos/builtin/packages/mesa/package.py diff --git a/var/spack/packages/metis/package.py b/var/spack/repos/builtin/packages/metis/package.py index bbfc4de7d1..bbfc4de7d1 100644 --- a/var/spack/packages/metis/package.py +++ b/var/spack/repos/builtin/packages/metis/package.py diff --git a/var/spack/packages/mpc/package.py b/var/spack/repos/builtin/packages/mpc/package.py index 50477a0ccb..50477a0ccb 100644 --- a/var/spack/packages/mpc/package.py +++ b/var/spack/repos/builtin/packages/mpc/package.py diff --git a/var/spack/packages/mpe2/mpe2.patch b/var/spack/repos/builtin/packages/mpe2/mpe2.patch index 3ade1f04f4..3ade1f04f4 100644 --- a/var/spack/packages/mpe2/mpe2.patch +++ b/var/spack/repos/builtin/packages/mpe2/mpe2.patch diff --git a/var/spack/packages/mpe2/package.py b/var/spack/repos/builtin/packages/mpe2/package.py index 27295172cc..27295172cc 100644 --- a/var/spack/packages/mpe2/package.py +++ b/var/spack/repos/builtin/packages/mpe2/package.py diff --git a/var/spack/packages/mpfr/package.py b/var/spack/repos/builtin/packages/mpfr/package.py index 0f2baac004..2758b0da2e 100644 --- a/var/spack/packages/mpfr/package.py +++ b/var/spack/repos/builtin/packages/mpfr/package.py @@ -31,9 +31,9 @@ class Mpfr(Package): url = "http://www.mpfr.org/mpfr-current/mpfr-3.1.3.tar.bz2" version('3.1.3', '5fdfa3cfa5c86514ee4a241a1affa138') - # version('3.1.2', 'ee2c3ac63bf0c2359bf08fc3ee094c19') + version('3.1.2', 'ee2c3ac63bf0c2359bf08fc3ee094c19') - depends_on('gmp') + depends_on('gmp@4.1.0:') def install(self, spec, prefix): configure("--prefix=%s" % prefix) diff --git a/var/spack/packages/mpibash/mpibash-4.3.patch b/var/spack/repos/builtin/packages/mpibash/mpibash-4.3.patch index 17e285b0bf..17e285b0bf 100644 --- a/var/spack/packages/mpibash/mpibash-4.3.patch +++ b/var/spack/repos/builtin/packages/mpibash/mpibash-4.3.patch diff --git a/var/spack/packages/mpibash/package.py b/var/spack/repos/builtin/packages/mpibash/package.py index d0f6dafed6..d0f6dafed6 100644 --- a/var/spack/packages/mpibash/package.py +++ b/var/spack/repos/builtin/packages/mpibash/package.py diff --git a/var/spack/packages/mpich/package.py b/var/spack/repos/builtin/packages/mpich/package.py index 7cfa0a3b61..00b7dfda75 100644 --- a/var/spack/packages/mpich/package.py +++ b/var/spack/repos/builtin/packages/mpich/package.py @@ -33,11 +33,12 @@ class Mpich(Package): list_url = "http://www.mpich.org/static/downloads/" list_depth = 2 + version('3.2', 'f414cfa77099cd1fa1a5ae4e22db508a') version('3.1.4', '2ab544607986486562e076b83937bba2') version('3.1.3', '93cb17f91ac758cbf9174ecb03563778') version('3.1.2', '7fbf4b81dcb74b07ae85939d1ceee7f1') version('3.1.1', '40dc408b1e03cc36d80209baaa2d32b7') - version('3.1', '5643dd176499bfb7d25079aaff25f2ec') + version('3.1', '5643dd176499bfb7d25079aaff25f2ec') version('3.0.4', '9c5d5d4fe1e17dd12153f40bc5b6dbc0') provides('mpi@:3.0', when='@3:') diff --git a/var/spack/packages/mpileaks/package.py b/var/spack/repos/builtin/packages/mpileaks/package.py index 661d9d66bf..661d9d66bf 100644 --- a/var/spack/packages/mpileaks/package.py +++ b/var/spack/repos/builtin/packages/mpileaks/package.py diff --git a/var/spack/packages/mrnet/package.py b/var/spack/repos/builtin/packages/mrnet/package.py index fed944e45f..fed944e45f 100644 --- a/var/spack/packages/mrnet/package.py +++ b/var/spack/repos/builtin/packages/mrnet/package.py diff --git a/var/spack/packages/munge/package.py b/var/spack/repos/builtin/packages/munge/package.py index c737ca0354..c737ca0354 100644 --- a/var/spack/packages/munge/package.py +++ b/var/spack/repos/builtin/packages/munge/package.py diff --git a/var/spack/packages/muster/package.py b/var/spack/repos/builtin/packages/muster/package.py index 0dc2e5e086..0dc2e5e086 100644 --- a/var/spack/packages/muster/package.py +++ b/var/spack/repos/builtin/packages/muster/package.py diff --git a/var/spack/packages/mvapich2/ad_lustre_rwcontig_open_source.patch b/var/spack/repos/builtin/packages/mvapich2/ad_lustre_rwcontig_open_source.patch index ff85845cf8..ff85845cf8 100644 --- a/var/spack/packages/mvapich2/ad_lustre_rwcontig_open_source.patch +++ b/var/spack/repos/builtin/packages/mvapich2/ad_lustre_rwcontig_open_source.patch diff --git a/var/spack/packages/mvapich2/package.py b/var/spack/repos/builtin/packages/mvapich2/package.py index 23a11b3171..23a11b3171 100644 --- a/var/spack/packages/mvapich2/package.py +++ b/var/spack/repos/builtin/packages/mvapich2/package.py diff --git a/var/spack/packages/nasm/package.py b/var/spack/repos/builtin/packages/nasm/package.py index 933b6a62c5..933b6a62c5 100644 --- a/var/spack/packages/nasm/package.py +++ b/var/spack/repos/builtin/packages/nasm/package.py diff --git a/var/spack/packages/ncdu/package.py b/var/spack/repos/builtin/packages/ncdu/package.py index 234f9730d6..234f9730d6 100644 --- a/var/spack/packages/ncdu/package.py +++ b/var/spack/repos/builtin/packages/ncdu/package.py diff --git a/var/spack/packages/ncurses/package.py b/var/spack/repos/builtin/packages/ncurses/package.py index 31f53b6c43..8dc808caac 100644 --- a/var/spack/packages/ncurses/package.py +++ b/var/spack/repos/builtin/packages/ncurses/package.py @@ -17,19 +17,14 @@ class Ncurses(Package): patch('patch_gcc_5.txt', when='%gcc@5.0:') def install(self, spec, prefix): - configure("--prefix=%s" % prefix, - "--with-shared", - "--enable-widec", - "--disable-pc-files", - "--without-ada") + opts = [ + "--prefix=%s" % prefix, + "--with-shared", + "--with-cxx-shared", + "--enable-widec", + "--enable-overwrite", + "--disable-lib-suffixes", + "--without-ada"] + configure(*opts) make() make("install") - - configure("--prefix=%s" % prefix, - "--with-shared", - "--disable-widec", - "--disable-pc-files", - "--without-ada") - make() - make("install") - diff --git a/var/spack/packages/ncurses/patch_gcc_5.txt b/var/spack/repos/builtin/packages/ncurses/patch_gcc_5.txt index f85e07cb8d..f85e07cb8d 100644 --- a/var/spack/packages/ncurses/patch_gcc_5.txt +++ b/var/spack/repos/builtin/packages/ncurses/patch_gcc_5.txt diff --git a/var/spack/packages/netcdf/netcdf-4.3.3-mpi.patch b/var/spack/repos/builtin/packages/netcdf/netcdf-4.3.3-mpi.patch index 46dda5fc9d..46dda5fc9d 100644 --- a/var/spack/packages/netcdf/netcdf-4.3.3-mpi.patch +++ b/var/spack/repos/builtin/packages/netcdf/netcdf-4.3.3-mpi.patch diff --git a/var/spack/packages/netcdf/package.py b/var/spack/repos/builtin/packages/netcdf/package.py index e1e0d836c6..239644d894 100644 --- a/var/spack/packages/netcdf/package.py +++ b/var/spack/repos/builtin/packages/netcdf/package.py @@ -13,6 +13,7 @@ class Netcdf(Package): patch('netcdf-4.3.3-mpi.patch') # Dependencies: + depends_on("cmake @2.8.12:") # >HDF5 depends_on("hdf5") diff --git a/var/spack/packages/netgauge/package.py b/var/spack/repos/builtin/packages/netgauge/package.py index 0ea42175c6..0ea42175c6 100644 --- a/var/spack/packages/netgauge/package.py +++ b/var/spack/repos/builtin/packages/netgauge/package.py diff --git a/var/spack/packages/netlib-blas/package.py b/var/spack/repos/builtin/packages/netlib-blas/package.py index 85e97323d3..85e97323d3 100644 --- a/var/spack/packages/netlib-blas/package.py +++ b/var/spack/repos/builtin/packages/netlib-blas/package.py diff --git a/var/spack/packages/netlib-lapack/package.py b/var/spack/repos/builtin/packages/netlib-lapack/package.py index fb6b99e27c..fb6b99e27c 100644 --- a/var/spack/packages/netlib-lapack/package.py +++ b/var/spack/repos/builtin/packages/netlib-lapack/package.py diff --git a/var/spack/packages/nettle/package.py b/var/spack/repos/builtin/packages/nettle/package.py index cd600b0b87..cd600b0b87 100644 --- a/var/spack/packages/nettle/package.py +++ b/var/spack/repos/builtin/packages/nettle/package.py diff --git a/var/spack/packages/ninja/package.py b/var/spack/repos/builtin/packages/ninja/package.py index 9e6bf4e358..9e6bf4e358 100644 --- a/var/spack/packages/ninja/package.py +++ b/var/spack/repos/builtin/packages/ninja/package.py diff --git a/var/spack/packages/ompss/package.py b/var/spack/repos/builtin/packages/ompss/package.py index e09e0a624f..e09e0a624f 100644 --- a/var/spack/packages/ompss/package.py +++ b/var/spack/repos/builtin/packages/ompss/package.py diff --git a/var/spack/packages/ompt-openmp/package.py b/var/spack/repos/builtin/packages/ompt-openmp/package.py index e5bcfb51f0..e5bcfb51f0 100644 --- a/var/spack/packages/ompt-openmp/package.py +++ b/var/spack/repos/builtin/packages/ompt-openmp/package.py diff --git a/var/spack/packages/opari2/package.py b/var/spack/repos/builtin/packages/opari2/package.py index c68978f5c0..c68978f5c0 100644 --- a/var/spack/packages/opari2/package.py +++ b/var/spack/repos/builtin/packages/opari2/package.py diff --git a/var/spack/packages/openblas/package.py b/var/spack/repos/builtin/packages/openblas/package.py index e01467c05a..9c8fa1c694 100644 --- a/var/spack/packages/openblas/package.py +++ b/var/spack/repos/builtin/packages/openblas/package.py @@ -19,3 +19,7 @@ class Openblas(Package): with working_dir(prefix.lib): symlink('libopenblas.a', 'blas.a') symlink('libopenblas.a', 'libblas.a') + + # Lapack virtual package should provide liblapack.a + with working_dir(prefix.lib): + symlink('libopenblas.a', 'liblapack.a') diff --git a/var/spack/packages/openmpi/ad_lustre_rwcontig_open_source.patch b/var/spack/repos/builtin/packages/openmpi/ad_lustre_rwcontig_open_source.patch index daa825ccbe..daa825ccbe 100644 --- a/var/spack/packages/openmpi/ad_lustre_rwcontig_open_source.patch +++ b/var/spack/repos/builtin/packages/openmpi/ad_lustre_rwcontig_open_source.patch diff --git a/var/spack/packages/openmpi/configure.patch b/var/spack/repos/builtin/packages/openmpi/configure.patch index 18fb42c1d1..18fb42c1d1 100644 --- a/var/spack/packages/openmpi/configure.patch +++ b/var/spack/repos/builtin/packages/openmpi/configure.patch diff --git a/var/spack/packages/openmpi/llnl-platforms.patch b/var/spack/repos/builtin/packages/openmpi/llnl-platforms.patch index f515743c4d..f515743c4d 100644 --- a/var/spack/packages/openmpi/llnl-platforms.patch +++ b/var/spack/repos/builtin/packages/openmpi/llnl-platforms.patch diff --git a/var/spack/packages/openmpi/package.py b/var/spack/repos/builtin/packages/openmpi/package.py index be2202fbbd..463719f9db 100644 --- a/var/spack/packages/openmpi/package.py +++ b/var/spack/repos/builtin/packages/openmpi/package.py @@ -13,29 +13,33 @@ class Openmpi(Package): """ homepage = "http://www.open-mpi.org" + url = "http://www.open-mpi.org/software/ompi/v1.10/downloads/openmpi-1.10.1.tar.bz2" + list_url = "http://www.open-mpi.org/software/ompi/" + list_depth = 3 - version('1.10.1', 'f0fcd77ed345b7eafb431968124ba16e', - url = "http://www.open-mpi.org/software/ompi/v1.10/downloads/openmpi-1.10.1.tar.bz2") - version('1.10.0', '280cf952de68369cebaca886c5ce0304', - url = "http://www.open-mpi.org/software/ompi/v1.10/downloads/openmpi-1.10.0.tar.bz2") - version('1.8.8', '0dab8e602372da1425e9242ae37faf8c', - url = 'http://www.open-mpi.org/software/ompi/v1.8/downloads/openmpi-1.8.8.tar.bz2') - version('1.6.5', '03aed2a4aa4d0b27196962a2a65fc475', - url = "http://www.open-mpi.org/software/ompi/v1.6/downloads/openmpi-1.6.5.tar.bz2") + version('1.10.1', 'f0fcd77ed345b7eafb431968124ba16e') + version('1.10.0', '280cf952de68369cebaca886c5ce0304') + version('1.8.8', '0dab8e602372da1425e9242ae37faf8c') + version('1.6.5', '03aed2a4aa4d0b27196962a2a65fc475') patch('ad_lustre_rwcontig_open_source.patch', when="@1.6.5") patch('llnl-platforms.patch', when="@1.6.5") patch('configure.patch', when="@1.10.0:") - provides('mpi@:2.2', when='@1.6.5') # Open MPI 1.6.5 supports MPI-2.2 - provides('mpi@:3.0', when='@1.8.8') # Open MPI 1.8.8 supports MPI-3.0 - provides('mpi@:3.0', when='@1.10.0') # Open MPI 1.10.0 supports MPI-3.0 - provides('mpi@:3.0', when='@1.10.1') # Open MPI 1.10.1 supports MPI-3.0 + variant('psm', default=False, description='Build support for the PSM library.') + variant('verbs', default=False, description='Build support for OpenFabrics verbs.') + + provides('mpi@:2.2', when='@1.6.5') + provides('mpi@:3.0', when='@1.7.5:') depends_on('hwloc') + def url_for_version(self, version): + return "http://www.open-mpi.org/software/ompi/v%s/downloads/openmpi-%s.tar.bz2" % (version.up_to(2), version) + + def setup_dependent_environment(self, module, spec, dep_spec): """For dependencies, make mpicc's use spack wrapper.""" os.environ['OMPI_CC'] = 'cc' @@ -45,9 +49,23 @@ class Openmpi(Package): def install(self, spec, prefix): - config_args = ["--prefix=%s" % prefix] - - config_args.append("--with-hwloc=%s" % spec['hwloc'].prefix) + config_args = ["--prefix=%s" % prefix, + "--with-hwloc=%s" % spec['hwloc'].prefix, + "--with-tm", # necessary for Torque support + "--enable-shared", + "--enable-static"] + + # Variants + if '+psm' in spec: + config_args.append("--with-psm") + + if '+verbs' in spec: + # Up through version 1.6, this option was previously named --with-openib + if spec.satisfies('@:1.6'): + config_args.append("--with-openib") + # In version 1.7, it was renamed to be --with-verbs + elif spec.satisfies('@1.7:'): + config_args.append("--with-verbs") # TODO: use variants for this, e.g. +lanl, +llnl, etc. # use this for LANL builds, but for LLNL builds, we need: diff --git a/var/spack/packages/openspeedshop/package.py b/var/spack/repos/builtin/packages/openspeedshop/package.py index 8c71bcb7c3..8c71bcb7c3 100644 --- a/var/spack/packages/openspeedshop/package.py +++ b/var/spack/repos/builtin/packages/openspeedshop/package.py diff --git a/var/spack/packages/openssl/package.py b/var/spack/repos/builtin/packages/openssl/package.py index bbb169ec6b..bbb169ec6b 100644 --- a/var/spack/packages/openssl/package.py +++ b/var/spack/repos/builtin/packages/openssl/package.py diff --git a/var/spack/packages/otf/package.py b/var/spack/repos/builtin/packages/otf/package.py index 52893dd265..52893dd265 100644 --- a/var/spack/packages/otf/package.py +++ b/var/spack/repos/builtin/packages/otf/package.py diff --git a/var/spack/packages/otf2/package.py b/var/spack/repos/builtin/packages/otf2/package.py index c3d61bc228..c3d61bc228 100644 --- a/var/spack/packages/otf2/package.py +++ b/var/spack/repos/builtin/packages/otf2/package.py diff --git a/var/spack/packages/pango/package.py b/var/spack/repos/builtin/packages/pango/package.py index df43625bf5..df43625bf5 100644 --- a/var/spack/packages/pango/package.py +++ b/var/spack/repos/builtin/packages/pango/package.py diff --git a/var/spack/packages/papi/package.py b/var/spack/repos/builtin/packages/papi/package.py index 910e0aa9f9..910e0aa9f9 100644 --- a/var/spack/packages/papi/package.py +++ b/var/spack/repos/builtin/packages/papi/package.py diff --git a/var/spack/packages/paraver/package.py b/var/spack/repos/builtin/packages/paraver/package.py index 5f8a153d4c..5f8a153d4c 100644 --- a/var/spack/packages/paraver/package.py +++ b/var/spack/repos/builtin/packages/paraver/package.py diff --git a/var/spack/packages/paraview/package.py b/var/spack/repos/builtin/packages/paraview/package.py index aaab352e66..aaab352e66 100644 --- a/var/spack/packages/paraview/package.py +++ b/var/spack/repos/builtin/packages/paraview/package.py diff --git a/var/spack/packages/parmetis/package.py b/var/spack/repos/builtin/packages/parmetis/package.py index c897dec7e4..c897dec7e4 100644 --- a/var/spack/packages/parmetis/package.py +++ b/var/spack/repos/builtin/packages/parmetis/package.py diff --git a/var/spack/packages/parpack/package.py b/var/spack/repos/builtin/packages/parpack/package.py index 622aceca04..622aceca04 100644 --- a/var/spack/packages/parpack/package.py +++ b/var/spack/repos/builtin/packages/parpack/package.py diff --git a/var/spack/packages/patchelf/package.py b/var/spack/repos/builtin/packages/patchelf/package.py index 036dc6bd17..036dc6bd17 100644 --- a/var/spack/packages/patchelf/package.py +++ b/var/spack/repos/builtin/packages/patchelf/package.py diff --git a/var/spack/packages/pcre/package.py b/var/spack/repos/builtin/packages/pcre/package.py index e38d337e3d..e38d337e3d 100644 --- a/var/spack/packages/pcre/package.py +++ b/var/spack/repos/builtin/packages/pcre/package.py diff --git a/var/spack/packages/pcre2/package.py b/var/spack/repos/builtin/packages/pcre2/package.py index 6a0244a15e..6a0244a15e 100644 --- a/var/spack/packages/pcre2/package.py +++ b/var/spack/repos/builtin/packages/pcre2/package.py diff --git a/var/spack/packages/pdt/package.py b/var/spack/repos/builtin/packages/pdt/package.py index ce3b793e30..ce3b793e30 100644 --- a/var/spack/packages/pdt/package.py +++ b/var/spack/repos/builtin/packages/pdt/package.py diff --git a/var/spack/packages/petsc/package.py b/var/spack/repos/builtin/packages/petsc/package.py index 43c7f8a9b6..87f700629d 100644 --- a/var/spack/packages/petsc/package.py +++ b/var/spack/repos/builtin/packages/petsc/package.py @@ -12,6 +12,8 @@ class Petsc(Package): version('3.5.2', 'ad170802b3b058b5deb9cd1f968e7e13') version('3.5.1', 'a557e029711ebf425544e117ffa44d8f') + depends_on("python @2.6:2.9") # requires Python for building + depends_on("boost") depends_on("blas") depends_on("lapack") diff --git a/var/spack/packages/pidx/package.py b/var/spack/repos/builtin/packages/pidx/package.py index 81aed62fb1..81aed62fb1 100644 --- a/var/spack/packages/pidx/package.py +++ b/var/spack/repos/builtin/packages/pidx/package.py diff --git a/var/spack/packages/pixman/package.py b/var/spack/repos/builtin/packages/pixman/package.py index 895cbdbca5..895cbdbca5 100644 --- a/var/spack/packages/pixman/package.py +++ b/var/spack/repos/builtin/packages/pixman/package.py diff --git a/var/spack/packages/pkg-config/package.py b/var/spack/repos/builtin/packages/pkg-config/package.py index 9964c6ce34..9964c6ce34 100644 --- a/var/spack/packages/pkg-config/package.py +++ b/var/spack/repos/builtin/packages/pkg-config/package.py diff --git a/var/spack/packages/pmgr_collective/package.py b/var/spack/repos/builtin/packages/pmgr_collective/package.py index 1fc47c658f..1fc47c658f 100644 --- a/var/spack/packages/pmgr_collective/package.py +++ b/var/spack/repos/builtin/packages/pmgr_collective/package.py diff --git a/var/spack/packages/postgresql/package.py b/var/spack/repos/builtin/packages/postgresql/package.py index 46922b7b71..46922b7b71 100644 --- a/var/spack/packages/postgresql/package.py +++ b/var/spack/repos/builtin/packages/postgresql/package.py diff --git a/var/spack/packages/ppl/package.py b/var/spack/repos/builtin/packages/ppl/package.py index 018d5c523d..018d5c523d 100644 --- a/var/spack/packages/ppl/package.py +++ b/var/spack/repos/builtin/packages/ppl/package.py diff --git a/var/spack/packages/protobuf/package.py b/var/spack/repos/builtin/packages/protobuf/package.py index 34085c7ce9..34085c7ce9 100644 --- a/var/spack/packages/protobuf/package.py +++ b/var/spack/repos/builtin/packages/protobuf/package.py diff --git a/var/spack/packages/py-astropy/package.py b/var/spack/repos/builtin/packages/py-astropy/package.py index d138a514f6..d138a514f6 100644 --- a/var/spack/packages/py-astropy/package.py +++ b/var/spack/repos/builtin/packages/py-astropy/package.py diff --git a/var/spack/packages/py-basemap/package.py b/var/spack/repos/builtin/packages/py-basemap/package.py index 8dfc99b28d..8dfc99b28d 100644 --- a/var/spack/packages/py-basemap/package.py +++ b/var/spack/repos/builtin/packages/py-basemap/package.py diff --git a/var/spack/packages/py-biopython/package.py b/var/spack/repos/builtin/packages/py-biopython/package.py index 8ecaf48626..8ecaf48626 100644 --- a/var/spack/packages/py-biopython/package.py +++ b/var/spack/repos/builtin/packages/py-biopython/package.py diff --git a/var/spack/packages/py-blessings/package.py b/var/spack/repos/builtin/packages/py-blessings/package.py index f2475a0efd..f2475a0efd 100644 --- a/var/spack/packages/py-blessings/package.py +++ b/var/spack/repos/builtin/packages/py-blessings/package.py diff --git a/var/spack/packages/py-cffi/package.py b/var/spack/repos/builtin/packages/py-cffi/package.py index 909049a67c..909049a67c 100644 --- a/var/spack/packages/py-cffi/package.py +++ b/var/spack/repos/builtin/packages/py-cffi/package.py diff --git a/var/spack/packages/py-coverage/package.py b/var/spack/repos/builtin/packages/py-coverage/package.py index 39b2ac3b01..39b2ac3b01 100644 --- a/var/spack/packages/py-coverage/package.py +++ b/var/spack/repos/builtin/packages/py-coverage/package.py diff --git a/var/spack/packages/py-cython/package.py b/var/spack/repos/builtin/packages/py-cython/package.py index 68eb735ad9..68eb735ad9 100644 --- a/var/spack/packages/py-cython/package.py +++ b/var/spack/repos/builtin/packages/py-cython/package.py diff --git a/var/spack/packages/py-dateutil/package.py b/var/spack/repos/builtin/packages/py-dateutil/package.py index 0a17f2f2d2..0a17f2f2d2 100644 --- a/var/spack/packages/py-dateutil/package.py +++ b/var/spack/repos/builtin/packages/py-dateutil/package.py diff --git a/var/spack/packages/py-epydoc/package.py b/var/spack/repos/builtin/packages/py-epydoc/package.py index af05510504..af05510504 100644 --- a/var/spack/packages/py-epydoc/package.py +++ b/var/spack/repos/builtin/packages/py-epydoc/package.py diff --git a/var/spack/packages/py-funcsigs/package.py b/var/spack/repos/builtin/packages/py-funcsigs/package.py index a428890288..a428890288 100644 --- a/var/spack/packages/py-funcsigs/package.py +++ b/var/spack/repos/builtin/packages/py-funcsigs/package.py diff --git a/var/spack/packages/py-genders/package.py b/var/spack/repos/builtin/packages/py-genders/package.py index c49c8fd5b2..c49c8fd5b2 100644 --- a/var/spack/packages/py-genders/package.py +++ b/var/spack/repos/builtin/packages/py-genders/package.py diff --git a/var/spack/packages/py-gnuplot/package.py b/var/spack/repos/builtin/packages/py-gnuplot/package.py index ede4472c03..ede4472c03 100644 --- a/var/spack/packages/py-gnuplot/package.py +++ b/var/spack/repos/builtin/packages/py-gnuplot/package.py diff --git a/var/spack/packages/py-h5py/package.py b/var/spack/repos/builtin/packages/py-h5py/package.py index 6293da5407..6293da5407 100644 --- a/var/spack/packages/py-h5py/package.py +++ b/var/spack/repos/builtin/packages/py-h5py/package.py diff --git a/var/spack/packages/py-ipython/package.py b/var/spack/repos/builtin/packages/py-ipython/package.py index 8d0e64a07f..8d0e64a07f 100644 --- a/var/spack/packages/py-ipython/package.py +++ b/var/spack/repos/builtin/packages/py-ipython/package.py diff --git a/var/spack/packages/py-libxml2/package.py b/var/spack/repos/builtin/packages/py-libxml2/package.py index 59005428e4..59005428e4 100644 --- a/var/spack/packages/py-libxml2/package.py +++ b/var/spack/repos/builtin/packages/py-libxml2/package.py diff --git a/var/spack/packages/py-lockfile/package.py b/var/spack/repos/builtin/packages/py-lockfile/package.py index 8722914d94..8722914d94 100644 --- a/var/spack/packages/py-lockfile/package.py +++ b/var/spack/repos/builtin/packages/py-lockfile/package.py diff --git a/var/spack/packages/py-mako/package.py b/var/spack/repos/builtin/packages/py-mako/package.py index 3e91ffd8e5..3e91ffd8e5 100644 --- a/var/spack/packages/py-mako/package.py +++ b/var/spack/repos/builtin/packages/py-mako/package.py diff --git a/var/spack/packages/py-matplotlib/package.py b/var/spack/repos/builtin/packages/py-matplotlib/package.py index 4776c581ee..2167735fb8 100644 --- a/var/spack/packages/py-matplotlib/package.py +++ b/var/spack/repos/builtin/packages/py-matplotlib/package.py @@ -26,6 +26,7 @@ class PyMatplotlib(Package): depends_on('py-pbr') depends_on('py-funcsigs') + depends_on('freetype') depends_on('qt', when='+gui') depends_on('bzip2') depends_on('tcl', when='+gui') diff --git a/var/spack/packages/py-mock/package.py b/var/spack/repos/builtin/packages/py-mock/package.py index e89af8802a..e89af8802a 100644 --- a/var/spack/packages/py-mock/package.py +++ b/var/spack/repos/builtin/packages/py-mock/package.py diff --git a/var/spack/packages/py-mpi4py/package.py b/var/spack/repos/builtin/packages/py-mpi4py/package.py index 8001689a18..8001689a18 100644 --- a/var/spack/packages/py-mpi4py/package.py +++ b/var/spack/repos/builtin/packages/py-mpi4py/package.py diff --git a/var/spack/packages/py-mx/package.py b/var/spack/repos/builtin/packages/py-mx/package.py index 717ee0562b..717ee0562b 100644 --- a/var/spack/packages/py-mx/package.py +++ b/var/spack/repos/builtin/packages/py-mx/package.py diff --git a/var/spack/packages/py-mysqldb1/package.py b/var/spack/repos/builtin/packages/py-mysqldb1/package.py index fda02b4982..fda02b4982 100644 --- a/var/spack/packages/py-mysqldb1/package.py +++ b/var/spack/repos/builtin/packages/py-mysqldb1/package.py diff --git a/var/spack/packages/py-nose/package.py b/var/spack/repos/builtin/packages/py-nose/package.py index e7c6cf0264..e7c6cf0264 100644 --- a/var/spack/packages/py-nose/package.py +++ b/var/spack/repos/builtin/packages/py-nose/package.py diff --git a/var/spack/packages/py-numexpr/package.py b/var/spack/repos/builtin/packages/py-numexpr/package.py index 89f8a525b1..89f8a525b1 100644 --- a/var/spack/packages/py-numexpr/package.py +++ b/var/spack/repos/builtin/packages/py-numexpr/package.py diff --git a/var/spack/packages/py-numpy/package.py b/var/spack/repos/builtin/packages/py-numpy/package.py index 4c085fba6e..0354811186 100644 --- a/var/spack/packages/py-numpy/package.py +++ b/var/spack/repos/builtin/packages/py-numpy/package.py @@ -7,15 +7,18 @@ class PyNumpy(Package): version('1.9.1', '78842b73560ec378142665e712ae4ad9') version('1.9.2', 'a1ed53432dbcd256398898d35bc8e645') - + + variant('blas', default=True) + extends('python') depends_on('py-nose') - depends_on('netlib-blas+fpic') - depends_on('netlib-lapack+shared') + depends_on('netlib-blas+fpic', when='+blas') + depends_on('netlib-lapack+shared', when='+blas') def install(self, spec, prefix): - with open('site.cfg', 'w') as f: - f.write('[DEFAULT]\n') - f.write('libraries=lapack,blas\n') - f.write('library_dirs=%s/lib:%s/lib\n' % (spec['blas'].prefix, spec['lapack'].prefix)) + if '+blas' in spec: + with open('site.cfg', 'w') as f: + f.write('[DEFAULT]\n') + f.write('libraries=lapack,blas\n') + f.write('library_dirs=%s/lib:%s/lib\n' % (spec['blas'].prefix, spec['lapack'].prefix)) python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pandas/package.py b/var/spack/repos/builtin/packages/py-pandas/package.py index 5b9997faa9..5b9997faa9 100644 --- a/var/spack/packages/py-pandas/package.py +++ b/var/spack/repos/builtin/packages/py-pandas/package.py diff --git a/var/spack/packages/py-pbr/package.py b/var/spack/repos/builtin/packages/py-pbr/package.py index 02957483d4..02957483d4 100644 --- a/var/spack/packages/py-pbr/package.py +++ b/var/spack/repos/builtin/packages/py-pbr/package.py diff --git a/var/spack/packages/py-periodictable/package.py b/var/spack/repos/builtin/packages/py-periodictable/package.py index 6a495a1cc8..6a495a1cc8 100644 --- a/var/spack/packages/py-periodictable/package.py +++ b/var/spack/repos/builtin/packages/py-periodictable/package.py diff --git a/var/spack/packages/py-pexpect/package.py b/var/spack/repos/builtin/packages/py-pexpect/package.py index ff5fac84e0..ff5fac84e0 100644 --- a/var/spack/packages/py-pexpect/package.py +++ b/var/spack/repos/builtin/packages/py-pexpect/package.py diff --git a/var/spack/packages/py-pil/package.py b/var/spack/repos/builtin/packages/py-pil/package.py index 743b761981..743b761981 100644 --- a/var/spack/packages/py-pil/package.py +++ b/var/spack/repos/builtin/packages/py-pil/package.py diff --git a/var/spack/packages/py-pillow/package.py b/var/spack/repos/builtin/packages/py-pillow/package.py index adc8507bd5..adc8507bd5 100644 --- a/var/spack/packages/py-pillow/package.py +++ b/var/spack/repos/builtin/packages/py-pillow/package.py diff --git a/var/spack/packages/py-pmw/package.py b/var/spack/repos/builtin/packages/py-pmw/package.py index 56131811e9..56131811e9 100644 --- a/var/spack/packages/py-pmw/package.py +++ b/var/spack/repos/builtin/packages/py-pmw/package.py diff --git a/var/spack/packages/py-pychecker/package.py b/var/spack/repos/builtin/packages/py-pychecker/package.py index bda5a746aa..bda5a746aa 100644 --- a/var/spack/packages/py-pychecker/package.py +++ b/var/spack/repos/builtin/packages/py-pychecker/package.py diff --git a/var/spack/packages/py-pycparser/package.py b/var/spack/repos/builtin/packages/py-pycparser/package.py index f2bb679d25..f2bb679d25 100644 --- a/var/spack/packages/py-pycparser/package.py +++ b/var/spack/repos/builtin/packages/py-pycparser/package.py diff --git a/var/spack/packages/py-pyelftools/package.py b/var/spack/repos/builtin/packages/py-pyelftools/package.py index d5ad32e624..d5ad32e624 100644 --- a/var/spack/packages/py-pyelftools/package.py +++ b/var/spack/repos/builtin/packages/py-pyelftools/package.py diff --git a/var/spack/packages/py-pygments/package.py b/var/spack/repos/builtin/packages/py-pygments/package.py index 7e07bf6869..7e07bf6869 100644 --- a/var/spack/packages/py-pygments/package.py +++ b/var/spack/repos/builtin/packages/py-pygments/package.py diff --git a/var/spack/packages/py-pylint/package.py b/var/spack/repos/builtin/packages/py-pylint/package.py index 9579708c29..9579708c29 100644 --- a/var/spack/packages/py-pylint/package.py +++ b/var/spack/repos/builtin/packages/py-pylint/package.py diff --git a/var/spack/packages/py-pypar/package.py b/var/spack/repos/builtin/packages/py-pypar/package.py index af9c76ccd8..af9c76ccd8 100644 --- a/var/spack/packages/py-pypar/package.py +++ b/var/spack/repos/builtin/packages/py-pypar/package.py diff --git a/var/spack/packages/py-pyparsing/package.py b/var/spack/repos/builtin/packages/py-pyparsing/package.py index a6e50ad139..a6e50ad139 100644 --- a/var/spack/packages/py-pyparsing/package.py +++ b/var/spack/repos/builtin/packages/py-pyparsing/package.py diff --git a/var/spack/packages/py-pyqt/package.py b/var/spack/repos/builtin/packages/py-pyqt/package.py index 8edca105bb..8edca105bb 100644 --- a/var/spack/packages/py-pyqt/package.py +++ b/var/spack/repos/builtin/packages/py-pyqt/package.py diff --git a/var/spack/packages/py-pyside/package.py b/var/spack/repos/builtin/packages/py-pyside/package.py index ffa433e18e..ffa433e18e 100644 --- a/var/spack/packages/py-pyside/package.py +++ b/var/spack/repos/builtin/packages/py-pyside/package.py diff --git a/var/spack/packages/py-pytables/package.py b/var/spack/repos/builtin/packages/py-pytables/package.py index a5b1e78ab3..a5b1e78ab3 100644 --- a/var/spack/packages/py-pytables/package.py +++ b/var/spack/repos/builtin/packages/py-pytables/package.py diff --git a/var/spack/packages/py-python-daemon/package.py b/var/spack/repos/builtin/packages/py-python-daemon/package.py index 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b/var/spack/repos/builtin/packages/py-scikit-learn/package.py index 5b078ce901..5b078ce901 100644 --- a/var/spack/packages/py-scikit-learn/package.py +++ b/var/spack/repos/builtin/packages/py-scikit-learn/package.py diff --git a/var/spack/packages/py-scipy/package.py b/var/spack/repos/builtin/packages/py-scipy/package.py index 3a1124cc15..3a1124cc15 100644 --- a/var/spack/packages/py-scipy/package.py +++ b/var/spack/repos/builtin/packages/py-scipy/package.py diff --git a/var/spack/packages/py-setuptools/package.py b/var/spack/repos/builtin/packages/py-setuptools/package.py index 26c048bfd4..26c048bfd4 100644 --- a/var/spack/packages/py-setuptools/package.py +++ b/var/spack/repos/builtin/packages/py-setuptools/package.py diff --git a/var/spack/packages/py-shiboken/package.py b/var/spack/repos/builtin/packages/py-shiboken/package.py index e4bf4ce07e..e4bf4ce07e 100644 --- a/var/spack/packages/py-shiboken/package.py +++ b/var/spack/repos/builtin/packages/py-shiboken/package.py diff --git a/var/spack/packages/py-sip/package.py b/var/spack/repos/builtin/packages/py-sip/package.py index e4a6fb6961..e4a6fb6961 100644 --- a/var/spack/packages/py-sip/package.py +++ b/var/spack/repos/builtin/packages/py-sip/package.py diff --git a/var/spack/packages/py-six/package.py b/var/spack/repos/builtin/packages/py-six/package.py index 05c5bd00a9..05c5bd00a9 100644 --- a/var/spack/packages/py-six/package.py +++ b/var/spack/repos/builtin/packages/py-six/package.py diff --git a/var/spack/packages/py-sphinx/package.py b/var/spack/repos/builtin/packages/py-sphinx/package.py index ec2e89a098..ec2e89a098 100644 --- a/var/spack/packages/py-sphinx/package.py +++ b/var/spack/repos/builtin/packages/py-sphinx/package.py diff --git a/var/spack/packages/py-sympy/package.py b/var/spack/repos/builtin/packages/py-sympy/package.py index c17e35b95f..c17e35b95f 100644 --- a/var/spack/packages/py-sympy/package.py +++ b/var/spack/repos/builtin/packages/py-sympy/package.py diff --git a/var/spack/packages/py-tappy/package.py b/var/spack/repos/builtin/packages/py-tappy/package.py index df61a909da..df61a909da 100644 --- a/var/spack/packages/py-tappy/package.py +++ b/var/spack/repos/builtin/packages/py-tappy/package.py diff --git a/var/spack/packages/py-twisted/package.py b/var/spack/repos/builtin/packages/py-twisted/package.py index 2fdebb6cb9..2fdebb6cb9 100644 --- a/var/spack/packages/py-twisted/package.py +++ b/var/spack/repos/builtin/packages/py-twisted/package.py diff --git a/var/spack/packages/py-urwid/package.py b/var/spack/repos/builtin/packages/py-urwid/package.py index aaa11c681d..aaa11c681d 100644 --- a/var/spack/packages/py-urwid/package.py +++ b/var/spack/repos/builtin/packages/py-urwid/package.py diff --git a/var/spack/packages/py-virtualenv/package.py b/var/spack/repos/builtin/packages/py-virtualenv/package.py index 037a6fc59f..037a6fc59f 100644 --- a/var/spack/packages/py-virtualenv/package.py +++ b/var/spack/repos/builtin/packages/py-virtualenv/package.py diff --git a/var/spack/packages/py-yapf/package.py b/var/spack/repos/builtin/packages/py-yapf/package.py index 12ef191515..12ef191515 100644 --- a/var/spack/packages/py-yapf/package.py +++ b/var/spack/repos/builtin/packages/py-yapf/package.py diff --git a/var/spack/packages/python/package.py b/var/spack/repos/builtin/packages/python/package.py index a1ce06feb0..a1ce06feb0 100644 --- a/var/spack/packages/python/package.py +++ b/var/spack/repos/builtin/packages/python/package.py diff --git a/var/spack/packages/qhull/package.py b/var/spack/repos/builtin/packages/qhull/package.py index 9da4078a70..f6712ced38 100644 --- a/var/spack/packages/qhull/package.py +++ b/var/spack/repos/builtin/packages/qhull/package.py @@ -20,6 +20,9 @@ class Qhull(Package): version('1.0', 'd0f978c0d8dfb2e919caefa56ea2953c', url="http://www.qhull.org/download/qhull-2012.1-src.tgz") + # https://github.com/qhull/qhull/pull/5 + patch('qhull-iterator.patch') + def install(self, spec, prefix): with working_dir('spack-build', create=True): cmake('..', *std_cmake_args) diff --git a/var/spack/repos/builtin/packages/qhull/qhull-iterator.patch b/var/spack/repos/builtin/packages/qhull/qhull-iterator.patch new file mode 100644 index 0000000000..88e931d84f --- /dev/null +++ b/var/spack/repos/builtin/packages/qhull/qhull-iterator.patch @@ -0,0 +1,45 @@ +From 93f4b306c54bb5be7724dcc19c6e747b62ac76dd Mon Sep 17 00:00:00 2001 +From: Ben Boeckel <mathstuf@gmail.com> +Date: Thu, 28 May 2015 11:12:25 -0400 +Subject: [PATCH] iterator: use the header + +Standard libraries are doing funky things with inline namespaces which +make these declarations impossible to get right. Just include the +header. +--- + src/libqhullcpp/QhullIterator.h | 3 +-- + src/libqhullcpp/QhullLinkedList.h | 5 +---- + 2 files changed, 2 insertions(+), 6 deletions(-) + +diff --git a/src/libqhullcpp/QhullIterator.h b/src/libqhullcpp/QhullIterator.h +index 9dde894..49f3a3b 100644 +--- a/src/libqhullcpp/QhullIterator.h ++++ b/src/libqhullcpp/QhullIterator.h +@@ -14,10 +14,9 @@ extern "C" { + } + + #include <assert.h> ++#include <iterator> + #include <string> + #include <vector> +-//! Avoid dependence on <iterator> +-namespace std { struct bidirectional_iterator_tag; struct random_access_iterator_tag; } + + namespace orgQhull { + +diff --git a/src/libqhullcpp/QhullLinkedList.h b/src/libqhullcpp/QhullLinkedList.h +index d828ac6..00b9008 100644 +--- a/src/libqhullcpp/QhullLinkedList.h ++++ b/src/libqhullcpp/QhullLinkedList.h +@@ -9,10 +9,7 @@ + #ifndef QHULLLINKEDLIST_H + #define QHULLLINKEDLIST_H + +-namespace std { +- struct bidirectional_iterator_tag; +- struct random_access_iterator_tag; +-}//std ++#include <iterator> + + #include "QhullError.h" + extern "C" { diff --git a/var/spack/packages/qt/package.py b/var/spack/repos/builtin/packages/qt/package.py index e8d843519d..e8d843519d 100644 --- a/var/spack/packages/qt/package.py +++ b/var/spack/repos/builtin/packages/qt/package.py diff --git a/var/spack/packages/qt/qt3krell.patch b/var/spack/repos/builtin/packages/qt/qt3krell.patch index 3333eeacd4..3333eeacd4 100644 --- a/var/spack/packages/qt/qt3krell.patch +++ b/var/spack/repos/builtin/packages/qt/qt3krell.patch diff --git a/var/spack/packages/qthreads/package.py b/var/spack/repos/builtin/packages/qthreads/package.py index dacdb71524..dacdb71524 100644 --- a/var/spack/packages/qthreads/package.py +++ b/var/spack/repos/builtin/packages/qthreads/package.py diff --git a/var/spack/packages/ravel/package.py b/var/spack/repos/builtin/packages/ravel/package.py index d774a0ab86..d774a0ab86 100644 --- a/var/spack/packages/ravel/package.py +++ b/var/spack/repos/builtin/packages/ravel/package.py diff --git a/var/spack/packages/readline/package.py b/var/spack/repos/builtin/packages/readline/package.py index 1b870e0e7f..1b870e0e7f 100644 --- a/var/spack/packages/readline/package.py +++ b/var/spack/repos/builtin/packages/readline/package.py diff --git a/var/spack/packages/rose/add_spack_compiler_recognition.patch b/var/spack/repos/builtin/packages/rose/add_spack_compiler_recognition.patch index ce61ae4e4c..ce61ae4e4c 100644 --- a/var/spack/packages/rose/add_spack_compiler_recognition.patch +++ b/var/spack/repos/builtin/packages/rose/add_spack_compiler_recognition.patch diff --git a/var/spack/packages/rose/package.py b/var/spack/repos/builtin/packages/rose/package.py index 1d7294acab..1d7294acab 100644 --- a/var/spack/packages/rose/package.py +++ b/var/spack/repos/builtin/packages/rose/package.py diff --git a/var/spack/packages/rsync/package.py b/var/spack/repos/builtin/packages/rsync/package.py index 76aec3096d..76aec3096d 100644 --- a/var/spack/packages/rsync/package.py +++ b/var/spack/repos/builtin/packages/rsync/package.py diff --git a/var/spack/packages/ruby/package.py b/var/spack/repos/builtin/packages/ruby/package.py index 6b6242362c..6b6242362c 100644 --- a/var/spack/packages/ruby/package.py +++ b/var/spack/repos/builtin/packages/ruby/package.py diff --git a/var/spack/packages/samtools/package.py b/var/spack/repos/builtin/packages/samtools/package.py index 72900398d8..72900398d8 100644 --- a/var/spack/packages/samtools/package.py +++ b/var/spack/repos/builtin/packages/samtools/package.py diff --git a/var/spack/packages/samtools/samtools1.2.patch b/var/spack/repos/builtin/packages/samtools/samtools1.2.patch index ead3ab4e2c..ead3ab4e2c 100644 --- a/var/spack/packages/samtools/samtools1.2.patch +++ b/var/spack/repos/builtin/packages/samtools/samtools1.2.patch diff --git a/var/spack/packages/scalasca/package.py b/var/spack/repos/builtin/packages/scalasca/package.py index 6de14564b2..6de14564b2 100644 --- a/var/spack/packages/scalasca/package.py +++ b/var/spack/repos/builtin/packages/scalasca/package.py diff --git a/var/spack/packages/scorep/package.py b/var/spack/repos/builtin/packages/scorep/package.py index 5127e814b6..5127e814b6 100644 --- a/var/spack/packages/scorep/package.py +++ b/var/spack/repos/builtin/packages/scorep/package.py diff --git a/var/spack/packages/scotch/package.py b/var/spack/repos/builtin/packages/scotch/package.py index 8229ed8686..8229ed8686 100644 --- a/var/spack/packages/scotch/package.py +++ b/var/spack/repos/builtin/packages/scotch/package.py diff --git a/var/spack/packages/scr/package.py b/var/spack/repos/builtin/packages/scr/package.py index 1408dce678..1408dce678 100644 --- a/var/spack/packages/scr/package.py +++ b/var/spack/repos/builtin/packages/scr/package.py diff --git a/var/spack/packages/silo/package.py b/var/spack/repos/builtin/packages/silo/package.py index 9eda11df15..9eda11df15 100644 --- a/var/spack/packages/silo/package.py +++ b/var/spack/repos/builtin/packages/silo/package.py diff --git a/var/spack/packages/snappy/package.py b/var/spack/repos/builtin/packages/snappy/package.py index c8f9ceef7d..c8f9ceef7d 100644 --- a/var/spack/packages/snappy/package.py +++ b/var/spack/repos/builtin/packages/snappy/package.py diff --git a/var/spack/packages/sparsehash/package.py b/var/spack/repos/builtin/packages/sparsehash/package.py index 7decaeb89b..7decaeb89b 100644 --- a/var/spack/packages/sparsehash/package.py +++ b/var/spack/repos/builtin/packages/sparsehash/package.py diff --git a/var/spack/packages/spindle/package.py b/var/spack/repos/builtin/packages/spindle/package.py index a20753458a..a20753458a 100644 --- a/var/spack/packages/spindle/package.py +++ b/var/spack/repos/builtin/packages/spindle/package.py diff --git a/var/spack/packages/spot/package.py b/var/spack/repos/builtin/packages/spot/package.py index 9e539277ae..9e539277ae 100644 --- a/var/spack/packages/spot/package.py +++ b/var/spack/repos/builtin/packages/spot/package.py diff --git a/var/spack/packages/sqlite/package.py b/var/spack/repos/builtin/packages/sqlite/package.py index 1cf2d30239..1cf2d30239 100644 --- a/var/spack/packages/sqlite/package.py +++ b/var/spack/repos/builtin/packages/sqlite/package.py diff --git a/var/spack/packages/stat/configure_mpicxx.patch b/var/spack/repos/builtin/packages/stat/configure_mpicxx.patch index e09056d95c..e09056d95c 100644 --- a/var/spack/packages/stat/configure_mpicxx.patch +++ b/var/spack/repos/builtin/packages/stat/configure_mpicxx.patch diff --git a/var/spack/packages/stat/package.py b/var/spack/repos/builtin/packages/stat/package.py index 5d81e62731..5d81e62731 100644 --- a/var/spack/packages/stat/package.py +++ b/var/spack/repos/builtin/packages/stat/package.py diff --git a/var/spack/packages/sundials/package.py b/var/spack/repos/builtin/packages/sundials/package.py index 7e025a8244..7e025a8244 100644 --- a/var/spack/packages/sundials/package.py +++ b/var/spack/repos/builtin/packages/sundials/package.py diff --git a/var/spack/packages/swig/package.py b/var/spack/repos/builtin/packages/swig/package.py index 8d46c4fe46..8d46c4fe46 100644 --- a/var/spack/packages/swig/package.py +++ b/var/spack/repos/builtin/packages/swig/package.py diff --git a/var/spack/packages/szip/package.py b/var/spack/repos/builtin/packages/szip/package.py index c48c5b431e..c48c5b431e 100644 --- a/var/spack/packages/szip/package.py +++ b/var/spack/repos/builtin/packages/szip/package.py diff --git a/var/spack/repos/builtin/packages/tar/package.py b/var/spack/repos/builtin/packages/tar/package.py new file mode 100644 index 0000000000..539174017c --- /dev/null +++ b/var/spack/repos/builtin/packages/tar/package.py @@ -0,0 +1,13 @@ +from spack import * + +class Tar(Package): + """GNU Tar provides the ability to create tar archives, as well as various other kinds of manipulation.""" + homepage = "https://www.gnu.org/software/tar/" + url = "http://ftp.gnu.org/gnu/tar/tar-1.28.tar.gz" + + version('1.28', '6ea3dbea1f2b0409b234048e021a9fd7') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make('install') diff --git a/var/spack/packages/task/package.py b/var/spack/repos/builtin/packages/task/package.py index 07f44cc45b..07f44cc45b 100644 --- a/var/spack/packages/task/package.py +++ b/var/spack/repos/builtin/packages/task/package.py diff --git a/var/spack/packages/taskd/package.py b/var/spack/repos/builtin/packages/taskd/package.py index 66bc0cb484..66bc0cb484 100644 --- a/var/spack/packages/taskd/package.py +++ b/var/spack/repos/builtin/packages/taskd/package.py diff --git a/var/spack/packages/tau/package.py b/var/spack/repos/builtin/packages/tau/package.py index 31492397d8..31492397d8 100644 --- a/var/spack/packages/tau/package.py +++ b/var/spack/repos/builtin/packages/tau/package.py diff --git a/var/spack/packages/tcl/package.py b/var/spack/repos/builtin/packages/tcl/package.py index 529adf7788..529adf7788 100644 --- a/var/spack/packages/tcl/package.py +++ b/var/spack/repos/builtin/packages/tcl/package.py diff --git a/var/spack/packages/texinfo/package.py b/var/spack/repos/builtin/packages/texinfo/package.py index 1b22c72e72..a83c10c0c1 100644 --- a/var/spack/packages/texinfo/package.py +++ b/var/spack/repos/builtin/packages/texinfo/package.py @@ -6,7 +6,7 @@ # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. # LLNL-CODE-647188 # -# For details, see https://scalability-llnl.github.io/spack +# For details, see https://llnl.github.io/spack # Please also see the LICENSE file for our notice and the LGPL. # # This program is free software; you can redistribute it and/or modify diff --git a/var/spack/packages/the_silver_searcher/package.py b/var/spack/repos/builtin/packages/the_silver_searcher/package.py index e4020b6766..e4020b6766 100644 --- a/var/spack/packages/the_silver_searcher/package.py +++ b/var/spack/repos/builtin/packages/the_silver_searcher/package.py diff --git a/var/spack/packages/thrift/package.py b/var/spack/repos/builtin/packages/thrift/package.py index 0e15052f64..0e15052f64 100644 --- a/var/spack/packages/thrift/package.py +++ b/var/spack/repos/builtin/packages/thrift/package.py diff --git a/var/spack/packages/tk/package.py b/var/spack/repos/builtin/packages/tk/package.py index 96736f6f95..96736f6f95 100644 --- a/var/spack/packages/tk/package.py +++ b/var/spack/repos/builtin/packages/tk/package.py diff 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2770f781ac..2770f781ac 100644 --- a/var/spack/packages/zlib/package.py +++ b/var/spack/repos/builtin/packages/zlib/package.py diff --git a/var/spack/packages/zsh/package.py b/var/spack/repos/builtin/packages/zsh/package.py index 06665f0c83..06665f0c83 100644 --- a/var/spack/packages/zsh/package.py +++ b/var/spack/repos/builtin/packages/zsh/package.py diff --git a/var/spack/repos/builtin/repo.yaml b/var/spack/repos/builtin/repo.yaml new file mode 100644 index 0000000000..54b282db6b --- /dev/null +++ b/var/spack/repos/builtin/repo.yaml @@ -0,0 +1,2 @@ +repo: + namespace: builtin |