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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/mafft/package.py | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/mafft/package.py b/var/spack/repos/builtin/packages/mafft/package.py new file mode 100644 index 0000000000..131b8c58f9 --- /dev/null +++ b/var/spack/repos/builtin/packages/mafft/package.py @@ -0,0 +1,42 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Mafft(Package): + """MAFFT is a multiple sequence alignment program for unix-like + operating systems. It offers a range of multiple alignment + methods, L-INS-i (accurate; for alignment of <~200 sequences), + FFT-NS-2 (fast; for alignment of <~30,000 sequences), etc.""" + + homepage = "http://mafft.cbrc.jp/alignment/software/index.html" + url = "http://mafft.cbrc.jp/alignment/software/mafft-7.221-with-extensions-src.tgz" + + version('7.221', 'b1aad911e51024d631722a2e061ba215') + + def install(self, spec, prefix): + with working_dir('core'): + make('PREFIX=%s' % prefix) + make('PREFIX=%s' % prefix, 'install') |