diff options
Diffstat (limited to 'var')
49 files changed, 1178 insertions, 379 deletions
diff --git a/var/spack/packages/R/package.py b/var/spack/packages/R/package.py index 2e6f65a742..2471dff09b 100644 --- a/var/spack/packages/R/package.py +++ b/var/spack/packages/R/package.py @@ -1,33 +1,49 @@ from spack import * + class R(Package): - """R is 'GNU S', a freely available language and environment for - statistical computing and graphics which provides a wide va - riety of statistical and graphical techniques: linear and - nonlinear modelling, statistical tests, time series analysis, - classification, clustering, etc. Please consult the R project - homepage for further information.""" - homepage = "http://www.example.com" - url = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz" + """ + R is 'GNU S', a freely available language and environment for statistical computing and graphics which provides a + wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series + analysis, classification, clustering, etc. Please consult the R project homepage for further information. + """ + homepage = "https://www.r-project.org" + url = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz" + version('3.2.3', '1ba3dac113efab69e706902810cc2970') + version('3.2.2', '57cef5c2e210a5454da1979562a10e5b') + version('3.2.1', 'c2aac8b40f84e08e7f8c9068de9239a3') + version('3.2.0', '66fa17ad457d7e618191aa0f52fc402e') + version('3.1.3', '53a85b884925aa6b5811dfc361d73fc4') version('3.1.2', '3af29ec06704cbd08d4ba8d69250ae74') - depends_on("readline") - depends_on("ncurses") - depends_on("icu") - depends_on("glib") - depends_on("zlib") - depends_on("libtiff") - depends_on("jpeg") - depends_on("cairo") - depends_on("pango") - depends_on("freetype") - depends_on("tcl") - depends_on("tk") + variant('external-lapack', default=False, description='Links to externally installed BLAS/LAPACK') + + # Virtual dependencies + depends_on('blas', when='+external-lapack') + depends_on('lapack', when='+external-lapack') + + # Concrete dependencies + depends_on('readline') + depends_on('ncurses') + depends_on('icu') + depends_on('glib') + depends_on('zlib') + depends_on('libtiff') + depends_on('jpeg') + depends_on('cairo') + depends_on('pango') + depends_on('freetype') + depends_on('tcl') + depends_on('tk') def install(self, spec, prefix): - configure("--prefix=%s" % prefix, - "--enable-R-shlib", - "--enable-BLAS-shlib") + options = ['--prefix=%s' % prefix, + '--enable-R-shlib', + '--enable-BLAS-shlib'] + if '+external-lapack' in spec: + options.extend(['--with-blas', '--with-lapack']) + + configure(*options) make() - make("install") + make('install') diff --git a/var/spack/packages/atop/package.py b/var/spack/packages/atop/package.py new file mode 100644 index 0000000000..346ab0763c --- /dev/null +++ b/var/spack/packages/atop/package.py @@ -0,0 +1,16 @@ +from spack import * + +class Atop(Package): + """Atop is an ASCII full-screen performance monitor for Linux""" + homepage = "http://www.atoptool.nl/index.php" + url = "http://www.atoptool.nl/download/atop-2.2-3.tar.gz" + + version('2.2-3', '034dc1544f2ec4e4d2c739d320dc326d') + + def install(self, spec, prefix): + make() + mkdirp(prefix.bin) + install("atop", join_path(prefix.bin, "atop")) + mkdirp(join_path(prefix.man, "man1")) + install(join_path("man", "atop.1"), + join_path(prefix.man, "man1", "atop.1")) diff --git a/var/spack/packages/boost/package.py b/var/spack/packages/boost/package.py index 81dadbbf61..3427b74ad6 100644 --- a/var/spack/packages/boost/package.py +++ b/var/spack/packages/boost/package.py @@ -14,6 +14,7 @@ class Boost(Package): list_url = "http://sourceforge.net/projects/boost/files/boost/" list_depth = 2 + version('1.60.0', '65a840e1a0b13a558ff19eeb2c4f0cbe') version('1.59.0', '6aa9a5c6a4ca1016edd0ed1178e3cb87') version('1.58.0', 'b8839650e61e9c1c0a89f371dd475546') version('1.57.0', '1be49befbdd9a5ce9def2983ba3e7b76') @@ -48,11 +49,11 @@ class Boost(Package): variant('mpi', default=False, description='Activate the component Boost.MPI') variant('compression', default=True, description='Activate the compression Boost.iostreams') - depends_on('mpi', when='+mpi') depends_on('python', when='+python') - depends_on('zlib', when='+compression') + depends_on('mpi', when='+mpi') depends_on('bzip2', when='+compression') - + depends_on('zlib', when='+compression') + def url_for_version(self, version): """Handle Boost's weird URLs, which write the version two different ways.""" parts = [str(p) for p in Version(version)] @@ -61,20 +62,23 @@ class Boost(Package): return "http://downloads.sourceforge.net/project/boost/boost/%s/boost_%s.tar.bz2" % ( dots, underscores) - def determine_toolset(self): - toolsets = {'gcc': 'gcc', + def determine_toolset(self, spec): + if spec.satisfies("=darwin-x86_64"): + return 'darwin' + + toolsets = {'g++': 'gcc', 'icpc': 'intel', 'clang++': 'clang'} for cc, toolset in toolsets.iteritems(): - if(cc in self.compiler.cxx_names): + if cc in self.compiler.cxx_names: return toolset # fallback to gcc if no toolset found return 'gcc' def determine_bootstrap_options(self, spec, options): - options.append('--with-toolset=%s' % self.determine_toolset()) + options.append('--with-toolset=%s' % self.determine_toolset(spec)) without_libs = [] if '~mpi' in spec: @@ -82,17 +86,20 @@ class Boost(Package): if '~python' in spec: without_libs.append('python') else: - options.append('--with-python=%s' % (spec['python'].prefix.bin + '/python')) + options.append('--with-python=%s' % + join_path(spec['python'].prefix.bin, 'python')) if without_libs: options.append('--without-libraries=%s' % ','.join(without_libs)) with open('user-config.jam', 'w') as f: if '+mpi' in spec: - f.write('using mpi : %s ;\n' % (spec['mpi'].prefix.bin + '/mpicxx')) + f.write('using mpi : %s ;\n' % + join_path(spec['mpi'].prefix.bin, 'mpicxx')) if '+python' in spec: - f.write('using python : %s : %s ;\n' % (spec['python'].version, - (spec['python'].prefix.bin + '/python'))) + f.write('using python : %s : %s ;\n' % + (spec['python'].version, + join_path(spec['python'].prefix.bin, 'python'))) def determine_b2_options(self, spec, options): if '+debug' in spec: @@ -101,22 +108,26 @@ class Boost(Package): options.append('variant=release') if '~compression' in spec: - options.extend(['-s NO_BZIP2=1', - '-s NO_ZLIB=1', - ]) + options.extend([ + '-s', 'NO_BZIP2=1', + '-s', 'NO_ZLIB=1']) if '+compression' in spec: - options.extend(['-s BZIP2_INCLUDE=%s' % spec['bzip2'].prefix.include, - '-s BZIP2_LIBPATH=%s' % spec['bzip2'].prefix.lib, - '-s ZLIB_INCLUDE=%s' % spec['zlib'].prefix.include, - '-s ZLIB_LIBPATH=%s' % spec['zlib'].prefix.lib]) - - options.extend(['toolset=%s' % self.determine_toolset(), - 'link=static,shared', - '--layout=tagged']) + options.extend([ + '-s', 'BZIP2_INCLUDE=%s' % spec['bzip2'].prefix.include, + '-s', 'BZIP2_LIBPATH=%s' % spec['bzip2'].prefix.lib, + '-s', 'ZLIB_INCLUDE=%s' % spec['zlib'].prefix.include, + '-s', 'ZLIB_LIBPATH=%s' % spec['zlib'].prefix.lib, + ]) + + options.extend([ + 'toolset=%s' % self.determine_toolset(spec), + 'link=static,shared', + 'threading=single,multi', + '--layout=tagged']) def install(self, spec, prefix): - # to make him find the user-config.jam + # to make Boost find the user-config.jam env['BOOST_BUILD_PATH'] = './' bootstrap = Executable('./bootstrap.sh') @@ -130,9 +141,8 @@ class Boost(Package): b2name = './b2' if spec.satisfies('@1.47:') else './bjam' b2 = Executable(b2name) - b2_options = ['-j %s' % make_jobs] + b2_options = ['-j', '%s' % make_jobs] self.determine_b2_options(spec, b2_options) - b2('install', 'threading=single', *b2_options) - b2('install', 'threading=multi', *b2_options) + b2('install', *b2_options) diff --git a/var/spack/packages/cereal/Werror.patch b/var/spack/packages/cereal/Werror.patch new file mode 100644 index 0000000000..d39eaaffdb --- /dev/null +++ b/var/spack/packages/cereal/Werror.patch @@ -0,0 +1,33 @@ +--- old/sandbox/CMakeLists.txt ++++ new/sandbox/CMakeLists.txt +@@ -4,9 +4,11 @@ + add_executable(sandbox_json sandbox_json.cpp) + add_executable(sandbox_rtti sandbox_rtti.cpp) + ++if(Boost_FOUND) + add_executable(sandbox_vs sandbox_vs.cpp) + target_link_libraries(sandbox_vs sandbox_vs_dll) + include_directories(sandbox_shared_lib) ++endif(Boost_FOUND) + + if(Boost_FOUND) + add_executable(performance performance.cpp) +--- old/include/cereal/types/common.hpp ++++ new/include/cereal/types/common.hpp +@@ -106,14 +106,16 @@ + t = reinterpret_cast<typename common_detail::is_enum<T>::type const &>( value ); + } + ++#ifndef CEREAL_ENABLE_RAW_POINTER_SERIALIZATION + //! Serialization for raw pointers + /*! This exists only to throw a static_assert to let users know we don't support raw pointers. */ + template <class Archive, class T> inline + void CEREAL_SERIALIZE_FUNCTION_NAME( Archive &, T * & ) + { + static_assert(cereal::traits::detail::delay_static_assert<T>::value, + "Cereal does not support serializing raw pointers - please use a smart pointer"); + } ++#endif + + //! Serialization for C style arrays + template <class Archive, class T> inline diff --git a/var/spack/packages/cereal/package.py b/var/spack/packages/cereal/package.py new file mode 100644 index 0000000000..a83927456f --- /dev/null +++ b/var/spack/packages/cereal/package.py @@ -0,0 +1,34 @@ +from spack import * +import shutil + +class Cereal(Package): + """cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.""" + homepage = "http://uscilab.github.io/cereal/" + url = "https://github.com/USCiLab/cereal/archive/v1.1.2.tar.gz" + + version('1.1.2', '34d4ad174acbff005c36d4d10e48cbb9') + version('1.1.1', '0ceff308c38f37d5b5f6df3927451c27') + version('1.1.0', '9f2d5f72e935c54f4c6d23e954ce699f') + version('1.0.0', 'd1bacca70a95cec0ddbff68b0871296b') + version('0.9.1', '8872d4444ff274ce6cd1ed364d0fc0ad') + + patch("Werror.patch") + + depends_on("cmake @2.6.2:") + + def install(self, spec, prefix): + # Don't use -Werror + filter_file(r'-Werror', '', 'CMakeLists.txt') + + # configure + # Boost is only used for self-tests, which we are not running (yet?) + cmake('.', '-DCMAKE_DISABLE_FIND_PACKAGE_Boost=TRUE', *std_cmake_args) + + # Build + make() + + # Install + shutil.rmtree(join_path(prefix, 'doc'), ignore_errors=True) + shutil.rmtree(join_path(prefix, 'include'), ignore_errors=True) + shutil.copytree('doc', join_path(prefix, 'doc'), symlinks=True) + shutil.copytree('include', join_path(prefix, 'include'), symlinks=True) diff --git a/var/spack/packages/cgal/package.py b/var/spack/packages/cgal/package.py new file mode 100644 index 0000000000..97356433be --- /dev/null +++ b/var/spack/packages/cgal/package.py @@ -0,0 +1,73 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## + +from spack import * + + +class Cgal(Package): + """ + CGAL is a software project that provides easy access to efficient and reliable geometric algorithms in the form of + a C++ library. CGAL is used in various areas needing geometric computation, such as geographic information systems, + computer aided design, molecular biology, medical imaging, computer graphics, and robotics. + """ + homepage = 'http://www.cgal.org/' + url = 'https://github.com/CGAL/cgal/archive/releases/CGAL-4.7.tar.gz' + + version('4.7', '4826714810f3b4c65cac96b90fb03b67') + version('4.6.3', 'e8ee2ecc8d2b09b94a121c09257b576d') + + # Installation instructions : http://doc.cgal.org/latest/Manual/installation.html + variant('shared', default=True, description='Enables the build of shared libraries') + variant('debug', default=False, description='Builds a debug version of the libraries') + + depends_on('boost') + depends_on('mpfr') + depends_on('gmp') + depends_on('zlib') + + # FIXME : Qt5 dependency missing (needs Qt5 and OpenGL) + # FIXME : Optional third party libraries missing + + def install(self, spec, prefix): + + options = [] + options.extend(std_cmake_args) + # CGAL supports only Release and Debug build type. Any other build type will raise an error at configure time + if '+debug' in spec: + options.append('-DCMAKE_BUILD_TYPE:STRING=Debug') + else: + options.append('-DCMAKE_BUILD_TYPE:STRING=Release') + + if '+shared' in spec: + options.append('-DBUILD_SHARED_LIBS:BOOL=ON') + else: + options.append('-DBUILD_SHARED_LIBS:BOOL=OFF') + + build_directory = join_path(self.stage.path, 'spack-build') + source_directory = self.stage.source_path + with working_dir(build_directory, create=True): + cmake(source_directory, *options) + make() + make("install") diff --git a/var/spack/packages/cmake/package.py b/var/spack/packages/cmake/package.py index cb54c92d69..173f72742c 100644 --- a/var/spack/packages/cmake/package.py +++ b/var/spack/packages/cmake/package.py @@ -38,8 +38,9 @@ class Cmake(Package): version('3.4.0', 'cd3034e0a44256a0917e254167217fc8', url = 'https://cmake.org/files/v3.4/cmake-3.4.0.tar.gz') -# version('3.0.1', 'e2e05d84cb44a42f1371d9995631dcf5') -# version('3.0.0', '21a1c85e1a3b803c4b48e7ff915a863e') + variant('ncurses', default=True, description='Enables the build of the ncurses gui') + + depends_on('ncurses', when='+ncurses') def install(self, spec, prefix): configure('--prefix=' + prefix, diff --git a/var/spack/packages/cube/package.py b/var/spack/packages/cube/package.py index cc1c684594..17d388c33d 100644 --- a/var/spack/packages/cube/package.py +++ b/var/spack/packages/cube/package.py @@ -1,58 +1,55 @@ -# FIXME: Add copyright statement +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. # +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## + from spack import * -from contextlib import closing + class Cube(Package): - """Cube the profile viewer for Score-P and Scalasca profiles. It - displays a multi-dimensional performance space consisting - of the dimensions (i) performance metric, (ii) call path, - and (iii) system resource.""" + """ + Cube the profile viewer for Score-P and Scalasca profiles. It displays a multi-dimensional performance space + consisting of the dimensions: + - performance metric + - call path + - system resource + """ homepage = "http://www.scalasca.org/software/cube-4.x/download.html" - url = "http://apps.fz-juelich.de/scalasca/releases/cube/4.2/dist/cube-4.2.3.tar.gz" + url = "http://apps.fz-juelich.de/scalasca/releases/cube/4.2/dist/cube-4.2.3.tar.gz" version('4.3.3', '07e109248ed8ffc7bdcce614264a2909', url='http://apps.fz-juelich.de/scalasca/releases/cube/4.3/dist/cube-4.3.3.tar.gz') - version('4.2.3', '8f95b9531f5a8f8134f279c2767c9b20') - - version('4.3TP1', 'a2090fbc7b2ba394bd5c09ba971e237f', - url = 'http://apps.fz-juelich.de/scalasca/releases/cube/4.3/dist/cube-4.3-TP1.tar.gz') - - # Using CC as C++ compiler provides quirky workaround for a Score-P build system attempt - # to guess a matching C compiler when configuring scorep-score - backend_user_provided = """\ -CC=cc -CXX=CC -F77=f77 -FC=f90 -#CFLAGS=-fPIC -#CXXFLAGS=-fPIC -""" - frontend_user_provided = """\ -CC_FOR_BUILD=cc -CXX_FOR_BUILD=CC -F77_FOR_BUILD=f70 -FC_FOR_BUILD=f90 -""" + version('4.2.3', '8f95b9531f5a8f8134f279c2767c9b20', + url="http://apps.fz-juelich.de/scalasca/releases/cube/4.2/dist/cube-4.2.3.tar.gz") - def install(self, spec, prefix): - # Use a custom compiler configuration, otherwise the score-p - # build system messes with spack's compiler settings. - # Create these three files in the build directory - - with closing(open("vendor/common/build-config/platforms/platform-backend-user-provided", "w")) as backend_file: - backend_file.write(self.backend_user_provided) - with closing(open("vendor/common/build-config/platforms/platform-frontend-user-provided", "w")) as frontend_file: - frontend_file.write(self.frontend_user_provided) + # TODO : add variant that builds GUI on top of Qt + def install(self, spec, prefix): configure_args = ["--prefix=%s" % prefix, - "--with-custom-compilers", - "--without-paraver", + "--without-paraver", "--without-gui"] - configure(*configure_args) - make(parallel=False) make("install", parallel=False) diff --git a/var/spack/packages/fftw/package.py b/var/spack/packages/fftw/package.py index 5f71762c4f..4d2b964242 100644 --- a/var/spack/packages/fftw/package.py +++ b/var/spack/packages/fftw/package.py @@ -39,54 +39,21 @@ class Fftw(Package): version('3.3.4', '2edab8c06b24feeb3b82bbb3ebf3e7b3') - ########## - # Floating point precision - FLOAT = 'float' - LONG_DOUBLE = 'long_double' - QUAD_PRECISION = 'quad' - PRECISION_OPTIONS = { - FLOAT: '--enable-float', - LONG_DOUBLE: '--enable--long-double', - QUAD_PRECISION: '--enable-quad-precision' - } - variant(FLOAT, default=False, description='Produces a single precision version of the library') - variant(LONG_DOUBLE, default=False, description='Produces a long double precision version of the library') - variant(QUAD_PRECISION, default=False, description='Produces a quad precision version of the library (works only with GCC and libquadmath)') - ########## + variant('float', default=True, description='Produces a single precision version of the library') + variant('long_double', default=True, description='Produces a long double precision version of the library') + variant('quad', default=False, description='Produces a quad precision version of the library (works only with GCC and libquadmath)') variant('mpi', default=False, description='Activate MPI support') depends_on('mpi', when='+mpi') - @staticmethod - def enabled(x): - """ - Given a variant name returns the string that means the variant is enabled - - :param x: variant name - """ - # FIXME : duplicated from MVAPICH2 - return '+' + x - - def check_fortran_availability(self, options): - if not self.compiler.f77 or not self.compiler.fc: - options.append("--disable-fortran") - - def set_floating_point_precision(self, spec, options): - l = [option for variant, option in Fftw.PRECISION_OPTIONS.iteritems() if self.enabled(variant) in spec] - if len(l) > 1: - raise RuntimeError('At most one floating point precision variant may activated per build.') - options.extend(l) - def install(self, spec, prefix): - options = ['--prefix=%s' % prefix, '--enable-shared', '--enable-threads', '--enable-openmp'] - self.check_fortran_availability(options) - self.set_floating_point_precision(spec, options) - + if not self.compiler.f77 or not self.compiler.fc: + options.append("--disable-fortran") if '+mpi' in spec: options.append('--enable-mpi') @@ -94,3 +61,15 @@ class Fftw(Package): make() make("install") + if '+float' in spec: + configure('--enable-float', *options) + make() + make("install") + if '+long_double' in spec: + configure('--enable-long-double', *options) + make() + make("install") + if '+quad' in spec: + configure('--enable-quad-precision', *options) + make() + make("install") diff --git a/var/spack/packages/fltk/font.patch b/var/spack/packages/fltk/font.patch new file mode 100644 index 0000000000..7706a1b4ee --- /dev/null +++ b/var/spack/packages/fltk/font.patch @@ -0,0 +1,44 @@ +Index: FL/x.H +=================================================================== +--- a/FL/x.H (revision 10476) ++++ b/FL/x.H (working copy) +@@ -132,6 +132,7 @@ + XFontStruct *ptr; + }; + extern FL_EXPORT Fl_XFont_On_Demand fl_xfont; ++extern FL_EXPORT XFontStruct* fl_core_font(); + + // this object contains all X-specific stuff about a window: + // Warning: this object is highly subject to change! +Index: src/fl_font.cxx +=================================================================== +--- a/src/fl_font.cxx (revision 10476) ++++ b/src/fl_font.cxx (working copy) +@@ -55,6 +55,14 @@ + # include "fl_font_x.cxx" + #endif // WIN32 + ++#ifdef WIN32 ++#elif defined(__APPLE__) ++#else ++XFontStruct *fl_core_font() ++{ ++ return fl_xfont.value(); ++} ++#endif + + double fl_width(const char* c) { + if (c) return fl_width(c, (int) strlen(c)); +Index: src/gl_draw.cxx +=================================================================== +--- a/src/gl_draw.cxx (revision 10476) ++++ b/src/gl_draw.cxx (working copy) +@@ -84,7 +84,7 @@ + * then sorting through them at draw time (for normal X rendering) to find which one can + * render the current glyph... But for now, just use the first font in the list for GL... + */ +- XFontStruct *font = fl_xfont; ++ XFontStruct *font = fl_core_font(); + int base = font->min_char_or_byte2; + int count = font->max_char_or_byte2-base+1; + fl_fontsize->listbase = glGenLists(256); diff --git a/var/spack/packages/fltk/package.py b/var/spack/packages/fltk/package.py new file mode 100644 index 0000000000..0b462f83f8 --- /dev/null +++ b/var/spack/packages/fltk/package.py @@ -0,0 +1,58 @@ +############################################################################## +# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Fltk(Package): + """ + FLTK (pronounced "fulltick") is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and + MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its + built-in GLUT emulation. + + FLTK is designed to be small and modular enough to be statically linked, but works fine as a shared library. FLTK + also includes an excellent UI builder called FLUID that can be used to create applications in minutes. + """ + homepage = 'http://www.fltk.org/' + url = 'http://fltk.org/pub/fltk/1.3.3/fltk-1.3.3-source.tar.gz' + + version('1.3.3', '9ccdb0d19dc104b87179bd9fd10822e3') + + patch('font.patch', when='@1.3.3') + + variant('shared', default=True, description='Enables the build of shared libraries') + + def install(self, spec, prefix): + options = ['--prefix=%s' % prefix, + '--enable-localjpeg', + '--enable-localpng', + '--enable-localzlib'] + + if '+shared' in spec: + options.append('--enable-shared') + + # FLTK needs to be built in-source + configure(*options) + make() + make('install') diff --git a/var/spack/packages/gdb/package.py b/var/spack/packages/gdb/package.py index fd567f346b..85ed3215e2 100644 --- a/var/spack/packages/gdb/package.py +++ b/var/spack/packages/gdb/package.py @@ -32,13 +32,13 @@ class Gdb(Package): -- or what another program was doing at the moment it crashed. """ homepage = "https://www.gnu.org/software/gdb" - url = "http://ftp.gnu.org/gnu/gdb/gdb-7.10.tar.xz" + url = "http://ftp.gnu.org/gnu/gdb/gdb-7.10.tar.gz" - version('7.10.1', '39e654460c9cdd80200a29ac020cfe11') - version('7.10', '2a35bac41fa8e10bf04f3a0dd7f7f363') - version('7.9.1', '35374c77a70884eb430c97061053a36e') - version('7.9', 'e6279f26559d839f0b4218a482bcb43e') - version('7.8.2', 'a80cf252ed2e775d4e4533341bbf2459') + version('7.10.1', 'b93a2721393e5fa226375b42d567d90b') + version('7.10', 'fa6827ad0fd2be1daa418abb11a54d86') + version('7.9.1', 'f3b97de919a9dba84490b2e076ec4cb0') + version('7.9', '8f8ced422fe462a00e0135a643544f17') + version('7.8.2', '8b0ea8b3559d3d90b3ff4952f0aeafbc') depends_on('texinfo') diff --git a/var/spack/packages/git/package.py b/var/spack/packages/git/package.py index 28c7aa8161..ddc5078c4d 100644 --- a/var/spack/packages/git/package.py +++ b/var/spack/packages/git/package.py @@ -5,14 +5,14 @@ class Git(Package): system designed to handle everything from small to very large projects with speed and efficiency.""" homepage = "http://git-scm.com" - url = "https://www.kernel.org/pub/software/scm/git/git-2.2.1.tar.xz" - - version('2.6.3', '5a6375349c3f13c8dbbabfc327bae429') - version('2.6.2', '32ae5ad29763fc927bfcaeab55385fd9') - version('2.6.1', 'dd4a3a7fe96598c553edd39d40c9c290') - version('2.6.0', '6b7d43d615fb3f0dfecf4d131e23f438') - version('2.5.4', 'ec118fcd1cf984edc17eb6588b78e81b') - version('2.2.1', '43e01f9d96ba8c11611e0eef0d9f9f28') + url = "https://www.kernel.org/pub/software/scm/git/git-2.2.1.tar.gz" + + version('2.6.3', 'b711be7628a4a2c25f38d859ee81b423') + version('2.6.2', 'da293290da69f45a86a311ad3cd43dc8') + version('2.6.1', '4c62ee9c5991fe93d99cf2a6b68397fd') + version('2.6.0', 'eb76a07148d94802a1745d759716a57e') + version('2.5.4', '3eca2390cf1fa698b48e2a233563a76b') + version('2.2.1', 'ff41fdb094eed1ec430aed8ee9b9849c') # Git compiles with curl support by default on but if your system diff --git a/var/spack/packages/glpk/package.py b/var/spack/packages/glpk/package.py new file mode 100644 index 0000000000..855f459fb3 --- /dev/null +++ b/var/spack/packages/glpk/package.py @@ -0,0 +1,53 @@ +############################################################################## +# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## + +from spack import * + + +class Glpk(Package): + """ + The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed + integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in + the form of a callable library + """ + homepage = "https://www.gnu.org/software/glpk" + url = "http://ftp.gnu.org/gnu/glpk/glpk-4.57.tar.gz" + + version('4.57', '237531a54f73155842f8defe51aedb0f') + + variant('gmp', default=False, description='Activates support for GMP library') + + depends_on('gmp', when='+gmp') + + def install(self, spec, prefix): + + options = ['--prefix=%s' % prefix] + + if '+gmp' in spec: + options.append('--with-gmp') + + configure(*options) + make() + make("install") diff --git a/var/spack/packages/gmsh/package.py b/var/spack/packages/gmsh/package.py new file mode 100644 index 0000000000..9d759303cb --- /dev/null +++ b/var/spack/packages/gmsh/package.py @@ -0,0 +1,84 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Gmsh(Package): + """ + Gmsh is a free 3D finite element grid generator with a built-in CAD engine and post-processor. Its design goal is + to provide a fast, light and user-friendly meshing tool with parametric input and advanced visualization + capabilities. Gmsh is built around four modules: geometry, mesh, solver and post-processing. The specification of + any input to these modules is done either interactively using the graphical user interface or in ASCII text files + using Gmsh's own scripting language. + """ + homepage = 'http://gmsh.info' + url = 'http://gmsh.info/src/gmsh-2.11.0-source.tgz' + + version('2.11.0', 'f15b6e7ac9ca649c9a74440e1259d0db') + + # FIXME : Misses dependencies on gmm, PetsC, TetGen + + variant('shared', default=True, description='Enables the build of shared libraries') + variant('debug', default=False, description='Builds the library in debug mode') + variant('mpi', default=False, description='Builds MPI support for parser and solver') + variant('fltk', default=False, description='Enables the build of the FLTK GUI') + variant('hdf5', default=False, description='Enables HDF5 support') + variant('compression', default=True, description='Enables IO compression through zlib') + + depends_on('blas') + depends_on('lapack') + depends_on('gmp') + depends_on('mpi', when='+mpi') + depends_on('fltk', when='+fltk') # Assumes OpenGL with GLU is already provided by the system + depends_on('hdf5', when='+hdf5') + depends_on('zlib', when='+compression') + + def install(self, spec, prefix): + + options = [] + options.extend(std_cmake_args) + + build_directory = join_path(self.stage.path, 'spack-build') + source_directory = self.stage.source_path + + if '+shared' in spec: + options.extend(['-DENABLE_BUILD_SHARED:BOOL=ON', + '-DENABLE_BUILD_DYNAMIC:BOOL=ON']) # Builds dynamic executable and installs shared library + else: + options.append('-DENABLE_BUILD_LIB:BOOL=ON') # Builds and installs static library + + if '+debug' in spec: + options.append('-DCMAKE_BUILD_TYPE:STRING=Debug') + + if '+mpi' in spec: + options.append('-DENABLE_MPI:BOOL=ON') + + if '+compression' in spec: + options.append('-DENABLE_COMPRESSED_IO:BOOL=ON') + + with working_dir(build_directory, create=True): + cmake(source_directory, *options) + make() + make('install') diff --git a/var/spack/packages/gperftools/package.py b/var/spack/packages/gperftools/package.py index 0ba44c9329..22b2e6c424 100644 --- a/var/spack/packages/gperftools/package.py +++ b/var/spack/packages/gperftools/package.py @@ -30,8 +30,11 @@ class Gperftools(Package): homepage = "https://code.google.com/p/gperftools" url = "https://googledrive.com/host/0B6NtGsLhIcf7MWxMMF9JdTN3UVk/gperftools-2.3.tar.gz" + version('2.4', '2171cea3bbe053036fb5d5d25176a160', url="https://github.com/gperftools/gperftools/releases/download/gperftools-2.4/gperftools-2.4.tar.gz") version('2.3', 'f54dd119f0e46ac1f13264f8d97adf90', url="https://googledrive.com/host/0B6NtGsLhIcf7MWxMMF9JdTN3UVk/gperftools-2.3.tar.gz") + depends_on("libunwind") + def install(self, spec, prefix): configure("--prefix=" + prefix) make() diff --git a/var/spack/packages/hdf5/package.py b/var/spack/packages/hdf5/package.py index adac79d9bb..9a40164341 100644 --- a/var/spack/packages/hdf5/package.py +++ b/var/spack/packages/hdf5/package.py @@ -10,12 +10,15 @@ class Hdf5(Package): url = "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.13/src/hdf5-1.8.13.tar.gz" list_url = "http://www.hdfgroup.org/ftp/HDF5/releases" list_depth = 3 - + version('1.8.16', 'b8ed9a36ae142317f88b0c7ef4b9c618') version('1.8.15', '03cccb5b33dbe975fdcd8ae9dc021f24') version('1.8.13', 'c03426e9e77d7766944654280b467289') + variant('cxx', default=True, description='Enable C++ support') + variant('fortran', default=True, description='Enable Fortran support') variant('mpi', default=False, description='Enable MPI support') + variant('threadsafe', default=False, description='Enable multithreading') depends_on("mpi", when='+mpi') depends_on("zlib") @@ -23,11 +26,36 @@ class Hdf5(Package): # TODO: currently hard-coded to use OpenMPI def install(self, spec, prefix): extra_args = [] + if '+cxx' in spec: + extra_args.extend([ + '--enable-cxx' + ]) + if '+fortran' in spec: + extra_args.extend([ + '--enable-fortran', + '--enable-fortran2003' + ]) if '+mpi' in spec: + # The HDF5 configure script warns if cxx and mpi are enabled + # together. There doesn't seem to be a real reason for this, except + # that parts of the MPI interface are not accessible via the C++ + # interface. Since they are still accessible via the C interface, + # this is not actually a problem. extra_args.extend([ "--enable-parallel", + "--enable-unsupported", "CC=%s" % spec['mpi'].prefix.bin + "/mpicc", "CXX=%s" % spec['mpi'].prefix.bin + "/mpic++", + "FC=%s" % spec['mpi'].prefix.bin + "/mpifort", + ]) + if '+threads' in spec: + if '+cxx' in spec or '+fortran' in spec: + die("Cannot use variant +threads with either +cxx or +fortran") + extra_args.extend([ + '--enable-threadsafe', + '--disable-hl', + 'CPPFLAGS=-DHDatexit=""', + 'CFLAGS=-DHDatexit=""' ]) configure( diff --git a/var/spack/packages/julia/gc.patch b/var/spack/packages/julia/gc.patch new file mode 100644 index 0000000000..6db69c6c1b --- /dev/null +++ b/var/spack/packages/julia/gc.patch @@ -0,0 +1,11 @@ +--- julia/src/gc.c ++++ julia/src/gc.c +@@ -162,7 +162,7 @@ + // A region is contiguous storage for up to REGION_PG_COUNT naturally aligned GC_PAGE_SZ pages + // It uses a very naive allocator (see malloc_page & free_page) + #if defined(_P64) && !defined(_COMPILER_MICROSOFT_) +-#define REGION_PG_COUNT 16*8*4096 // 8G because virtual memory is cheap ++#define REGION_PG_COUNT 8*4096 // 512M + #else + #define REGION_PG_COUNT 8*4096 // 512M + #endif diff --git a/var/spack/packages/julia/package.py b/var/spack/packages/julia/package.py new file mode 100644 index 0000000000..d978842d9c --- /dev/null +++ b/var/spack/packages/julia/package.py @@ -0,0 +1,69 @@ +from spack import * +import os + +class Julia(Package): + """The Julia Language: A fresh approach to technical computing""" + homepage = "http://julialang.org" + url = "http://github.com/JuliaLang/julia/releases/download/v0.4.2/julia-0.4.2.tar.gz" + + version('0.4.2', 'ccfeb4f4090c8b31083f5e1ccb03eb06') + + patch('gc.patch') + + # Build-time dependencies + depends_on("cmake @2.8:") + # depends_on("awk") + # depends_on("m4") + # depends_on("pkg-config") + depends_on("python @2.6:2.9") + + # I think that Julia requires the dependencies above, but it builds find (on + # my system) without these. We should enable them as necessary. + + # Run-time dependencies + # depends_on("arpack") + # depends_on("fftw +float") + # depends_on("gmp") + # depends_on("mpfr") + # depends_on("pcre2") + + # ARPACK: Requires BLAS and LAPACK; needs to use the same version as Julia. + + # BLAS and LAPACK: Julia prefers 64-bit versions on 64-bit systems. OpenBLAS + # has an option for this; make it available as variant. + + # FFTW: Something doesn't work when using a pre-installed FFTW library; need + # to investigate. + + # GMP, MPFR: Something doesn't work when using a pre-installed FFTW library; + # need to investigate. + + # LLVM: Julia works only with specific versions, and might require patches. + # Thus we let Julia install its own LLVM. + + # Other possible dependencies: + # USE_SYSTEM_OPENLIBM=0 + # USE_SYSTEM_OPENSPECFUN=0 + # USE_SYSTEM_DSFMT=0 + # USE_SYSTEM_SUITESPARSE=0 + # USE_SYSTEM_UTF8PROC=0 + # USE_SYSTEM_LIBGIT2=0 + + def install(self, spec, prefix): + # Explicitly setting CC, CXX, or FC breaks building libuv, one of + # Julia's dependencies. This might be a Darwin-specific problem. Given + # how Spack sets up compilers, Julia should still use Spack's compilers, + # even if we don't specify them explicitly. + options = [#"CC=cc", + #"CXX=c++", + #"FC=fc", + #"USE_SYSTEM_ARPACK=1", + #"USE_SYSTEM_FFTW=1", + #"USE_SYSTEM_GMP=1", + #"USE_SYSTEM_MPFR=1", + #TODO "USE_SYSTEM_PCRE=1", + "prefix=%s" % prefix] + with open('Make.user', 'w') as f: + f.write('\n'.join(options) + '\n') + make() + make("install") diff --git a/var/spack/packages/libpciaccess/package.py b/var/spack/packages/libpciaccess/package.py index 403bafbbd2..0c0847d323 100644 --- a/var/spack/packages/libpciaccess/package.py +++ b/var/spack/packages/libpciaccess/package.py @@ -5,12 +5,10 @@ class Libpciaccess(Package): """Generic PCI access library.""" homepage = "http://cgit.freedesktop.org/xorg/lib/libpciaccess/" - url = "http://cgit.freedesktop.org/xorg/lib/libpciaccess/" + url = "http://xorg.freedesktop.org/archive/individual/lib/libpciaccess-0.13.4.tar.bz2" - version('0.13.4', git='http://anongit.freedesktop.org/git/xorg/lib/libpciaccess.git', - tag='libpciaccess-0.13.4') + version('0.13.4', 'ace78aec799b1cf6dfaea55d3879ed9f') - depends_on('autoconf') depends_on('libtool') def install(self, spec, prefix): @@ -20,9 +18,6 @@ class Libpciaccess(Package): mkdir(prefix.lib) return - from subprocess import call - call(["./autogen.sh"]) configure("--prefix=%s" % prefix) - make() make("install") diff --git a/var/spack/packages/lua/package.py b/var/spack/packages/lua/package.py index 6d8f7806d9..ca8cfc5365 100644 --- a/var/spack/packages/lua/package.py +++ b/var/spack/packages/lua/package.py @@ -6,6 +6,7 @@ class Lua(Package): homepage = "http://www.lua.org" url = "http://www.lua.org/ftp/lua-5.1.5.tar.gz" + version('5.3.2', '33278c2ab5ee3c1a875be8d55c1ca2a1') version('5.3.1', '797adacada8d85761c079390ff1d9961') version('5.3.0', 'a1b0a7e92d0c85bbff7a8d27bf29f8af') version('5.2.4', '913fdb32207046b273fdb17aad70be13') @@ -18,11 +19,16 @@ class Lua(Package): version('5.1.3', 'a70a8dfaa150e047866dc01a46272599') depends_on('ncurses') + depends_on('readline') def install(self, spec, prefix): + if spec.satisfies("=darwin-i686") or spec.satisfies("=darwin-x86_64"): + target = 'macosx' + else: + target = 'linux' make('INSTALL_TOP=%s' % prefix, - 'MYLDFLAGS="-L%s/lib -Wl,-rpath,%s"' % (spec['ncurses'].prefix,spec['ncurses'].prefix), - 'linux') + 'MYLDFLAGS=-L%s -lncurses' % spec['ncurses'].prefix.lib, + target) make('INSTALL_TOP=%s' % prefix, - 'MYLDFLAGS="-L%s/lib -Wl,-rpath,%s"' % (spec['ncurses'].prefix,spec['ncurses'].prefix), + 'MYLDFLAGS=-L%s -lncurses' % spec['ncurses'].prefix.lib, 'install') diff --git a/var/spack/packages/mbedtls/package.py b/var/spack/packages/mbedtls/package.py new file mode 100644 index 0000000000..7745522956 --- /dev/null +++ b/var/spack/packages/mbedtls/package.py @@ -0,0 +1,20 @@ +from spack import * + +class Mbedtls(Package): + """ + mbed TLS (formerly known as PolarSSL) makes it trivially easy for developers to include cryptographic and SSL/TLS capabilities in their (embedded) products, facilitating this functionality with a minimal coding footprint. + """ + homepage = "https://tls.mbed.org" + url = "https://github.com/ARMmbed/mbedtls/archive/mbedtls-2.2.1.tar.gz" + + version('2.2.1' , '73a38f96898d6d03e32f55dd9f9a67be') + version('2.2.0' , 'eaf4586c1ef93ae872e606b6c1203942') + version('2.1.4' , '40cdf67b6c6d92c9cbcfd552d39ea3ae') + version('2.1.3' , '7eb4cf1dfa68578a2c8dbd0b6fa752dd') + version('1.3.16', '4144d7320c691f721aeb9e67a1bc38e0') + + def install(self, spec, prefix): + cmake('.', *std_cmake_args) + + make() + make("install") diff --git a/var/spack/packages/metis/package.py b/var/spack/packages/metis/package.py index 7ce5ae1925..bbfc4de7d1 100644 --- a/var/spack/packages/metis/package.py +++ b/var/spack/packages/metis/package.py @@ -1,27 +1,83 @@ +############################################################################## +# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## + from spack import * + class Metis(Package): - """METIS is a set of serial programs for partitioning graphs, - partitioning finite element meshes, and producing fill reducing - orderings for sparse matrices. The algorithms implemented in - METIS are based on the multilevel recursive-bisection, - multilevel k-way, and multi-constraint partitioning schemes.""" + """ + METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill + reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel + recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes. + """ - homepage = "http://glaros.dtc.umn.edu/gkhome/metis/metis/overview" - url = "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz" + homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/metis/overview' + url = "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz" version('5.1.0', '5465e67079419a69e0116de24fce58fe') - depends_on('mpi') + variant('shared', default=True, description='Enables the build of shared libraries') + variant('debug', default=False, description='Builds the library in debug mode') + variant('gdb', default=False, description='Enables gdb support') + + variant('idx64', default=False, description='Use int64_t as default index type') + variant('double', default=False, description='Use double precision floating point types') + + depends_on('cmake @2.8:') # build-time dependency + + depends_on('gdb', when='+gdb') def install(self, spec, prefix): - cmake(".", - '-DGKLIB_PATH=%s/GKlib' % pwd(), - '-DSHARED=1', - '-DCMAKE_C_COMPILER=mpicc', - '-DCMAKE_CXX_COMPILER=mpicxx', - '-DSHARED=1', - *std_cmake_args) - - make() - make("install") + + options = [] + options.extend(std_cmake_args) + + build_directory = join_path(self.stage.path, 'spack-build') + source_directory = self.stage.source_path + + options.append('-DGKLIB_PATH:PATH={metis_source}/GKlib'.format(metis_source=source_directory)) + + if '+shared' in spec: + options.append('-DSHARED:BOOL=ON') + + if '+debug' in spec: + options.extend(['-DDEBUG:BOOL=ON', + '-DCMAKE_BUILD_TYPE:STRING=Debug']) + + if '+gdb' in spec: + options.append('-DGDB:BOOL=ON') + + metis_header = join_path(source_directory, 'include', 'metis.h') + + if '+idx64' in spec: + filter_file('IDXTYPEWIDTH 32', 'IDXTYPEWIDTH 64', metis_header) + + if '+double' in spec: + filter_file('REALTYPEWIDTH 32', 'REALTYPEWIDTH 64', metis_header) + + with working_dir(build_directory, create=True): + cmake(source_directory, *options) + make() + make("install")
\ No newline at end of file diff --git a/var/spack/packages/mpfr/package.py b/var/spack/packages/mpfr/package.py index 0f2baac004..2758b0da2e 100644 --- a/var/spack/packages/mpfr/package.py +++ b/var/spack/packages/mpfr/package.py @@ -31,9 +31,9 @@ class Mpfr(Package): url = "http://www.mpfr.org/mpfr-current/mpfr-3.1.3.tar.bz2" version('3.1.3', '5fdfa3cfa5c86514ee4a241a1affa138') - # version('3.1.2', 'ee2c3ac63bf0c2359bf08fc3ee094c19') + version('3.1.2', 'ee2c3ac63bf0c2359bf08fc3ee094c19') - depends_on('gmp') + depends_on('gmp@4.1.0:') def install(self, spec, prefix): configure("--prefix=%s" % prefix) diff --git a/var/spack/packages/mpich/package.py b/var/spack/packages/mpich/package.py index 7cfa0a3b61..00b7dfda75 100644 --- a/var/spack/packages/mpich/package.py +++ b/var/spack/packages/mpich/package.py @@ -33,11 +33,12 @@ class Mpich(Package): list_url = "http://www.mpich.org/static/downloads/" list_depth = 2 + version('3.2', 'f414cfa77099cd1fa1a5ae4e22db508a') version('3.1.4', '2ab544607986486562e076b83937bba2') version('3.1.3', '93cb17f91ac758cbf9174ecb03563778') version('3.1.2', '7fbf4b81dcb74b07ae85939d1ceee7f1') version('3.1.1', '40dc408b1e03cc36d80209baaa2d32b7') - version('3.1', '5643dd176499bfb7d25079aaff25f2ec') + version('3.1', '5643dd176499bfb7d25079aaff25f2ec') version('3.0.4', '9c5d5d4fe1e17dd12153f40bc5b6dbc0') provides('mpi@:3.0', when='@3:') diff --git a/var/spack/packages/opari2/package.py b/var/spack/packages/opari2/package.py index 3f8c65377d..c68978f5c0 100644 --- a/var/spack/packages/opari2/package.py +++ b/var/spack/packages/opari2/package.py @@ -1,18 +1,38 @@ -# FIXME: Add copyright statement here +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## from spack import * -from contextlib import closing class Opari2(Package): - """OPARI2 is a source-to-source instrumentation tool for OpenMP and - hybrid codes. It surrounds OpenMP directives and runtime library - calls with calls to the POMP2 measurement interface. - OPARI2 will provide you with a new initialization method that allows - for multi-directory and parallel builds as well as the usage of - pre-instrumented libraries. Furthermore, an efficient way of - tracking parent-child relationships was added. Additionally, we - extended OPARI2 to support instrumentation of OpenMP 3.0 - tied tasks. """ + """ + OPARI2 is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and + runtime library calls with calls to the POMP2 measurement interface. OPARI2 will provide you with a new + initialization method that allows for multi-directory and parallel builds as well as the usage of pre-instrumented + libraries. Furthermore, an efficient way of tracking parent-child relationships was added. Additionally, we extended + OPARI2 to support instrumentation of OpenMP 3.0 tied tasks. + """ homepage = "http://www.vi-hps.org/projects/score-p" url = "http://www.vi-hps.org/upload/packages/opari2/opari2-1.1.2.tar.gz" @@ -21,47 +41,8 @@ class Opari2(Package): url='http://www.vi-hps.org/upload/packages/opari2/opari2-1.1.4.tar.gz') version('1.1.2', '9a262c7ca05ff0ab5f7775ae96f3539e') - backend_user_provided = """\ -CC=cc -CXX=c++ -F77=f77 -FC=f90 -CFLAGS=-fPIC -CXXFLAGS=-fPIC -""" - frontend_user_provided = """\ -CC_FOR_BUILD=cc -CXX_FOR_BUILD=c++ -F77_FOR_BUILD=f70 -FC_FOR_BUILD=f90 -CFLAGS_FOR_BUILD=-fPIC -CXXFLAGS_FOR_BUILD=-fPIC -""" - mpi_user_provided = """\ -MPICC=mpicc -MPICXX=mpicxx -MPIF77=mpif77 -MPIFC=mpif90 -MPI_CFLAGS=-fPIC -MPI_CXXFLAGS=-fPIC -""" - def install(self, spec, prefix): - # Use a custom compiler configuration, otherwise the score-p - # build system messes with spack's compiler settings. - # Create these three files in the build directory - with closing(open("platform-backend-user-provided", "w")) as backend_file: - backend_file.write(self.backend_user_provided) - with closing(open("platform-frontend-user-provided", "w")) as frontend_file: - frontend_file.write(self.frontend_user_provided) - with closing(open("platform-mpi-user-provided", "w")) as mpi_file: - mpi_file.write(self.mpi_user_provided) - - # FIXME: Modify the configure line to suit your build system here. configure("--prefix=%s" % prefix, - "--with-custom-compilers", "--enable-shared") - - # FIXME: Add logic to build and install here make() make("install") diff --git a/var/spack/packages/openblas/package.py b/var/spack/packages/openblas/package.py index e01467c05a..9c8fa1c694 100644 --- a/var/spack/packages/openblas/package.py +++ b/var/spack/packages/openblas/package.py @@ -19,3 +19,7 @@ class Openblas(Package): with working_dir(prefix.lib): symlink('libopenblas.a', 'blas.a') symlink('libopenblas.a', 'libblas.a') + + # Lapack virtual package should provide liblapack.a + with working_dir(prefix.lib): + symlink('libopenblas.a', 'liblapack.a') diff --git a/var/spack/packages/openssl/package.py b/var/spack/packages/openssl/package.py index 40648fca49..bbb169ec6b 100644 --- a/var/spack/packages/openssl/package.py +++ b/var/spack/packages/openssl/package.py @@ -17,12 +17,24 @@ class Openssl(Package): parallel = False def install(self, spec, prefix): + # OpenSSL uses a variable APPS in its Makefile. If it happens to be set + # in the environment, then this will override what is set in the + # Makefile, leading to build errors. + env.pop('APPS', None) + if spec.satisfies("=darwin-x86_64") or spec.satisfies("=ppc64"): + # This needs to be done for all 64-bit architectures (except Linux, + # where it happens automatically?) + env['KERNEL_BITS'] = '64' config = Executable("./config") config("--prefix=%s" % prefix, - "--openssldir=%s/etc/openssl" % prefix, + "--openssldir=%s" % join_path(prefix, 'etc', 'openssl'), "zlib", "no-krb5", "shared") + # Remove non-standard compiler options if present. These options are + # present e.g. on Darwin. They are non-standard, i.e. most compilers + # (e.g. gcc) will not accept them. + filter_file(r'-arch x86_64', '', 'Makefile') make() make("install") diff --git a/var/spack/packages/otf2/package.py b/var/spack/packages/otf2/package.py index b3d3a5b663..c3d61bc228 100644 --- a/var/spack/packages/otf2/package.py +++ b/var/spack/packages/otf2/package.py @@ -1,12 +1,35 @@ -# FIXME: Add copyright +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## from spack import * -from contextlib import closing -import os + class Otf2(Package): - """The Open Trace Format 2 is a highly scalable, memory efficient event - trace data format plus support library.""" + """ + The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. + """ homepage = "http://www.vi-hps.org/score-p" url = "http://www.vi-hps.org/upload/packages/otf2/otf2-1.4.tar.gz" @@ -22,57 +45,11 @@ class Otf2(Package): version('1.2.1', '8fb3e11fb7489896596ae2c7c83d7fc8', url="http://www.vi-hps.org/upload/packages/otf2/otf2-1.2.1.tar.gz") - backend_user_provided = """\ -CC=cc -CXX=c++ -F77=f77 -FC=f90 -CFLAGS=-fPIC -CXXFLAGS=-fPIC -""" - frontend_user_provided = """\ -CC_FOR_BUILD=cc -CXX_FOR_BUILD=c++ -F77_FOR_BUILD=f70 -FC_FOR_BUILD=f90 -CFLAGS_FOR_BUILD=-fPIC -CXXFLAGS_FOR_BUILD=-fPIC -""" - mpi_user_provided = """\ -MPICC=cc -MPICXX=c++ -MPIF77=f77 -MPIFC=f90 -MPI_CFLAGS=-fPIC -MPI_CXXFLAGS=-fPIC -""" - - @when('@:1.2.1') - def version_specific_args(self): - return ["--with-platform=disabled", "CC=cc", "CXX=c++", "F77=f77", "F90=f90", "CFLAGS=-fPIC", "CXXFLAGS=-fPIC"] - - @when('@1.3:') - def version_specific_args(self): - # TODO: figure out what scorep's build does as of otf2 1.3 - return ["--with-custom-compilers"] - def install(self, spec, prefix): - # Use a custom compiler configuration, otherwise the score-p - # build system messes with spack's compiler settings. - # Create these three files in the build directory - with closing(open("platform-backend-user-provided", "w")) as backend_file: - backend_file.write(self.backend_user_provided) - with closing(open("platform-frontend-user-provided", "w")) as frontend_file: - frontend_file.write(self.frontend_user_provided) - with closing(open("platform-mpi-user-provided", "w")) as mpi_file: - mpi_file.write(self.mpi_user_provided) - configure_args=["--prefix=%s" % prefix, - "--enable-shared"] - - configure_args.extend(self.version_specific_args()) - + "--enable-shared", + "CFLAGS=-fPIC", + "CXXFLAGS=-fPIC"] configure(*configure_args) - make() make("install") diff --git a/var/spack/packages/paraview/package.py b/var/spack/packages/paraview/package.py index 1d99b34899..aaab352e66 100644 --- a/var/spack/packages/paraview/package.py +++ b/var/spack/packages/paraview/package.py @@ -60,6 +60,10 @@ class Paraview(Package): feature_args.extend(std_cmake_args) + if 'darwin' in self.spec.architecture: + feature_args.append('-DVTK_USE_X:BOOL=OFF') + feature_args.append('-DPARAVIEW_DO_UNIX_STYLE_INSTALLS:BOOL=ON') + cmake('..', '-DCMAKE_INSTALL_PREFIX:PATH=%s' % prefix, '-DBUILD_TESTING:BOOL=OFF', diff --git a/var/spack/packages/parmetis/package.py b/var/spack/packages/parmetis/package.py index d8cd337304..c897dec7e4 100644 --- a/var/spack/packages/parmetis/package.py +++ b/var/spack/packages/parmetis/package.py @@ -1,26 +1,95 @@ +############################################################################## +# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## + from spack import * +# FIXME : lot of code is duplicated from packages/metis/package.py . Inheriting from there may reduce +# FIXME : the installation rules to just a few lines + + class Parmetis(Package): - """ParMETIS is an MPI-based parallel library that implements a - variety of algorithms for partitioning unstructured graphs, - meshes, and for computing fill-reducing orderings of sparse - matrices.""" - homepage = "http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview" - url = "http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/parmetis-4.0.3.tar.gz" + """ + ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured + graphs, meshes, and for computing fill-reducing orderings of sparse matrices. + """ + homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview' + url = 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/parmetis-4.0.3.tar.gz' version('4.0.3', 'f69c479586bf6bb7aff6a9bc0c739628') + variant('shared', default=True, description='Enables the build of shared libraries') + variant('debug', default=False, description='Builds the library in debug mode') + variant('gdb', default=False, description='Enables gdb support') + + variant('idx64', default=False, description='Use int64_t as default index type') + variant('double', default=False, description='Use double precision floating point types') + + depends_on('cmake @2.8:') # build dependency depends_on('mpi') + # FIXME : this should conflict with metis as it builds its own version internally + + depends_on('gdb', when='+gdb') + def install(self, spec, prefix): - cmake(".", - '-DGKLIB_PATH=%s/metis/GKlib' % pwd(), - '-DMETIS_PATH=%s/metis' % pwd(), - '-DSHARED=1', - '-DCMAKE_C_COMPILER=mpicc', - '-DCMAKE_CXX_COMPILER=mpicxx', - '-DSHARED=1', - *std_cmake_args) - - make() - make("install") + options = [] + options.extend(std_cmake_args) + + build_directory = join_path(self.stage.path, 'spack-build') + source_directory = self.stage.source_path + metis_source = join_path(source_directory, 'metis') + + # FIXME : Once a contract is defined, MPI compilers should be retrieved indirectly via spec['mpi'] in case + # FIXME : they use a non-standard name + options.extend(['-DGKLIB_PATH:PATH={metis_source}/GKlib'.format(metis_source=metis_source), + '-DMETIS_PATH:PATH={metis_source}'.format(metis_source=metis_source), + '-DCMAKE_C_COMPILER:STRING=mpicc', + '-DCMAKE_CXX_COMPILER:STRING=mpicxx']) + + if '+shared' in spec: + options.append('-DSHARED:BOOL=ON') + + if '+debug' in spec: + options.extend(['-DDEBUG:BOOL=ON', + '-DCMAKE_BUILD_TYPE:STRING=Debug']) + + if '+gdb' in spec: + options.append('-DGDB:BOOL=ON') + + metis_header = join_path(metis_source, 'include', 'metis.h') + + if '+idx64' in spec: + filter_file('IDXTYPEWIDTH 32', 'IDXTYPEWIDTH 64', metis_header) + + if '+double' in spec: + filter_file('REALTYPEWIDTH 32', 'REALTYPEWIDTH 64', metis_header) + + with working_dir(build_directory, create=True): + cmake(source_directory, *options) + make() + make("install") + # Parmetis build system doesn't allow for an external metis to be used, but doesn't copy the required + # metis header either + install(metis_header, self.prefix.include) diff --git a/var/spack/packages/patchelf/package.py b/var/spack/packages/patchelf/package.py new file mode 100644 index 0000000000..036dc6bd17 --- /dev/null +++ b/var/spack/packages/patchelf/package.py @@ -0,0 +1,16 @@ +from spack import * + +class Patchelf(Package): + """PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.""" + + homepage = "https://nixos.org/patchelf.html" + url = "http://nixos.org/releases/patchelf/patchelf-0.8/patchelf-0.8.tar.gz" + list_url = "http://nixos.org/releases/patchelf/" + list_depth = 2 + + version('0.8', '407b229e6a681ffb0e2cdd5915cb2d01') + + def install(self, spec, prefix): + configure('--prefix=%s' % prefix) + make() + make("install") diff --git a/var/spack/packages/pcre2/package.py b/var/spack/packages/pcre2/package.py new file mode 100644 index 0000000000..6a0244a15e --- /dev/null +++ b/var/spack/packages/pcre2/package.py @@ -0,0 +1,15 @@ +from spack import * + +class Pcre2(Package): + """The PCRE2 package contains Perl Compatible Regular Expression + libraries. These are useful for implementing regular expression + pattern matching using the same syntax and semantics as Perl 5.""" + homepage = "http://www.pcre.org""" + url = "ftp://ftp.csx.cam.ac.uk/pub/software/programming/pcre/pcre2-10.20.tar.bz2" + + version('10.20', 'dcd027c57ecfdc8a6c3af9d0acf5e3f7') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/petsc/package.py b/var/spack/packages/petsc/package.py index f3ed3d72ec..87f700629d 100644 --- a/var/spack/packages/petsc/package.py +++ b/var/spack/packages/petsc/package.py @@ -12,6 +12,8 @@ class Petsc(Package): version('3.5.2', 'ad170802b3b058b5deb9cd1f968e7e13') version('3.5.1', 'a557e029711ebf425544e117ffa44d8f') + depends_on("python @2.6:2.9") # requires Python for building + depends_on("boost") depends_on("blas") depends_on("lapack") @@ -23,9 +25,6 @@ class Petsc(Package): def install(self, spec, prefix): configure("--prefix=%s" % prefix, - "CC=cc", - "CXX=c++", - "FC=f90", "--with-blas-lib=%s/libblas.a" % spec['blas'].prefix.lib, "--with-lapack-lib=%s/liblapack.a" % spec['lapack'].prefix.lib, "--with-boost-dir=%s" % spec['boost'].prefix, @@ -33,6 +32,7 @@ class Petsc(Package): "--with-parmetis-dir=%s" % spec['parmetis'].prefix, "--with-metis-dir=%s" % spec['metis'].prefix, "--with-hdf5-dir=%s" % spec['hdf5'].prefix, + "--with-mpi-dir=%s" % spec['mpi'].prefix, "--with-shared-libraries=0") # PETSc has its own way of doing parallel make. diff --git a/var/spack/packages/py-astropy/package.py b/var/spack/packages/py-astropy/package.py new file mode 100644 index 0000000000..d138a514f6 --- /dev/null +++ b/var/spack/packages/py-astropy/package.py @@ -0,0 +1,28 @@ +from spack import * + +class PyAstropy(Package): + """ + The Astropy Project is a community effort to develop a single core + package for Astronomy in Python and foster interoperability between + Python astronomy packages. + """ + homepage = 'http://www.astropy.org/' + + version('1.1.post1', 'b52919f657a37d45cc45f5cb0f58c44d') + + def url_for_version(self, version): + return 'https://pypi.python.org/packages/source/a/astropy/astropy-{0}.tar.gz'.format(version) + + extends('python') + + depends_on('cfitsio') + depends_on('expat') + depends_on('py-h5py') + depends_on('py-numpy') + depends_on('py-scipy') + + def install(self, spec, prefix): + python('setup.py', 'build', '--use-system-cfitsio', + '--use-system-expat') + python('setup.py', 'install', '--prefix=' + prefix) + diff --git a/var/spack/packages/py-funcsigs/package.py b/var/spack/packages/py-funcsigs/package.py new file mode 100644 index 0000000000..a428890288 --- /dev/null +++ b/var/spack/packages/py-funcsigs/package.py @@ -0,0 +1,19 @@ +from spack import * +import os + +class PyFuncsigs(Package): + """Python function signatures from PEP362 for Python 2.6, 2.7 and 3.2.""" + homepage = "https://pypi.python.org/pypi/funcsigs" + url = "https://pypi.python.org/packages/source/f/funcsigs/funcsigs-0.4.tar.gz" + + version('0.4', 'fb1d031f284233e09701f6db1281c2a5') + + extends('python') + + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) + + + diff --git a/var/spack/packages/py-matplotlib/package.py b/var/spack/packages/py-matplotlib/package.py index a5fee39d42..4776c581ee 100644 --- a/var/spack/packages/py-matplotlib/package.py +++ b/var/spack/packages/py-matplotlib/package.py @@ -12,7 +12,7 @@ class PyMatplotlib(Package): variant('gui', default=False, description='Enable GUI') variant('ipython', default=False, description='Enable ipython support') - extends('python', ignore=r'bin/nosetests.*$') + extends('python', ignore=r'bin/nosetests.*$|bin/pbr$') depends_on('py-pyside', when='+gui') depends_on('py-ipython', when='+ipython') @@ -22,6 +22,9 @@ class PyMatplotlib(Package): depends_on('py-pytz') depends_on('py-nose') depends_on('py-numpy') + depends_on('py-mock') + depends_on('py-pbr') + depends_on('py-funcsigs') depends_on('qt', when='+gui') depends_on('bzip2') diff --git a/var/spack/packages/py-mock/package.py b/var/spack/packages/py-mock/package.py index 3b08428ba0..e89af8802a 100644 --- a/var/spack/packages/py-mock/package.py +++ b/var/spack/packages/py-mock/package.py @@ -11,6 +11,7 @@ class PyMock(Package): version('1.3.0', '73ee8a4afb3ff4da1b4afa287f39fdeb') extends('python') + depends_on('py-pbr') depends_on('py-setuptools@17.1:') def install(self, spec, prefix): diff --git a/var/spack/packages/py-numexpr/package.py b/var/spack/packages/py-numexpr/package.py new file mode 100644 index 0000000000..89f8a525b1 --- /dev/null +++ b/var/spack/packages/py-numexpr/package.py @@ -0,0 +1,15 @@ +from spack import * +import re + +class PyNumexpr(Package): + """Fast numerical expression evaluator for NumPy""" + homepage = "https://pypi.python.org/pypi/numexpr" + url = "https://pypi.python.org/packages/source/n/numexpr/numexpr-2.4.6.tar.gz" + + version('2.4.6', '17ac6fafc9ea1ce3eb970b9abccb4fbd') + + extends('python') + depends_on('py-numpy') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pbr/package.py b/var/spack/packages/py-pbr/package.py new file mode 100644 index 0000000000..02957483d4 --- /dev/null +++ b/var/spack/packages/py-pbr/package.py @@ -0,0 +1,18 @@ +from spack import * +import os + +class PyPbr(Package): + """PBR is a library that injects some useful and sensible default behaviors into your setuptools run.""" + homepage = "https://pypi.python.org/pypi/pbr" + url = "https://pypi.python.org/packages/source/p/pbr/pbr-1.8.1.tar.gz" + + version('1.8.1', 'c8f9285e1a4ca6f9654c529b158baa3a') + + extends('python') + + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) + + diff --git a/var/spack/packages/py-periodictable/package.py b/var/spack/packages/py-periodictable/package.py new file mode 100644 index 0000000000..6a495a1cc8 --- /dev/null +++ b/var/spack/packages/py-periodictable/package.py @@ -0,0 +1,17 @@ +from spack import * + +class PyPeriodictable(Package): + """nose extends the test loading and running features of unittest, + making it easier to write, find and run tests.""" + + homepage = "https://pypi.python.org/pypi/periodictable" + url = "https://pypi.python.org/packages/source/p/periodictable/periodictable-1.4.1.tar.gz" + + version('1.4.1', '7246b63cc0b6b1be6e86b6616f9e866e') + + depends_on('py-numpy') + depends_on('py-pyparsing') + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pytables/package.py b/var/spack/packages/py-pytables/package.py new file mode 100644 index 0000000000..a5b1e78ab3 --- /dev/null +++ b/var/spack/packages/py-pytables/package.py @@ -0,0 +1,19 @@ +from spack import * +import re + +class PyPytables(Package): + """PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope with extremely large amounts of data.""" + homepage = "http://www.pytables.org/" + url = "https://github.com/PyTables/PyTables/archive/v.3.2.2.tar.gz" + + version('3.2.2', '7cbb0972e4d6580f629996a5bed92441') + + extends('python') + depends_on('hdf5') + depends_on('py-numpy') + depends_on('py-numexpr') + depends_on('py-cython') + + def install(self, spec, prefix): + env["HDF5_DIR"] = spec['hdf5'].prefix + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-setuptools/package.py b/var/spack/packages/py-setuptools/package.py index 760ad4d6db..26c048bfd4 100644 --- a/var/spack/packages/py-setuptools/package.py +++ b/var/spack/packages/py-setuptools/package.py @@ -8,6 +8,7 @@ class PySetuptools(Package): version('11.3.1', '01f69212e019a2420c1693fb43593930') version('16.0', '0ace0b96233516fc5f7c857d086aa3ad') version('18.1', 'f72e87f34fbf07f299f6cb46256a0b06') + version('19.2', '78353b1f80375ca5e088f4b4627ffe03') extends('python') diff --git a/var/spack/packages/python/package.py b/var/spack/packages/python/package.py index eae2566b57..a1ce06feb0 100644 --- a/var/spack/packages/python/package.py +++ b/var/spack/packages/python/package.py @@ -11,15 +11,16 @@ import spack class Python(Package): """The Python programming language.""" homepage = "http://www.python.org" - url = "http://www.python.org/ftp/python/2.7.8/Python-2.7.8.tar.xz" + url = "http://www.python.org/ftp/python/2.7.8/Python-2.7.8.tgz" extendable = True - version('2.7.8', 'd235bdfa75b8396942e360a70487ee00') - version('2.7.10', 'c685ef0b8e9f27b5e3db5db12b268ac6') - version('2.7.11', '1dbcc848b4cd8399a8199d000f9f823c', preferred=True) - version('3.5.0', 'd149d2812f10cbe04c042232e7964171') - version('3.5.1', 'e9ea6f2623fffcdd871b7b19113fde80') + version('3.5.1', 'be78e48cdfc1a7ad90efff146dce6cfe') + version('3.5.0', 'a56c0c0b45d75a0ec9c6dee933c41c36') + version('2.7.11', '6b6076ec9e93f05dd63e47eb9c15728b', preferred=True) + version('2.7.10', 'd7547558fd673bd9d38e2108c6b42521') + version('2.7.9', '5eebcaa0030dc4061156d3429657fb83') + version('2.7.8', 'd4bca0159acb0b44a781292b5231936f') depends_on("openssl") depends_on("bzip2") diff --git a/var/spack/packages/scalasca/package.py b/var/spack/packages/scalasca/package.py index cf7a40c1f5..6de14564b2 100644 --- a/var/spack/packages/scalasca/package.py +++ b/var/spack/packages/scalasca/package.py @@ -1,65 +1,63 @@ -# FIXME: Add copyright +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## from spack import * + class Scalasca(Package): - """Scalasca is a software tool that supports the performance optimization - of parallel programs by measuring and analyzing their runtime behavior. - The analysis identifies potential performance bottlenecks - in - particular those concerning communication and synchronization - and - offers guidance in exploring their causes.""" + """ + Scalasca is a software tool that supports the performance optimization of parallel programs by measuring and + analyzing their runtime behavior. The analysis identifies potential performance bottlenecks - in particular those + concerning communication and synchronization - and offers guidance in exploring their causes. + """ - # FIXME: add a proper url for your package's homepage here. homepage = "http://www.scalasca.org" - url = "http://apps.fz-juelich.de/scalasca/releases/scalasca/2.1/dist/scalasca-2.1.tar.gz" + url = "http://apps.fz-juelich.de/scalasca/releases/scalasca/2.1/dist/scalasca-2.1.tar.gz" - version('2.1', 'bab9c2b021e51e2ba187feec442b96e6', - url = 'http://apps.fz-juelich.de/scalasca/releases/scalasca/2.1/dist/scalasca-2.1.tar.gz' ) + version('2.2.2', '2bafce988b0522d18072f7771e491ab9', + url='http://apps.fz-juelich.de/scalasca/releases/scalasca/2.2/dist/scalasca-2.2.2.tar.gz') - depends_on("mpi") - depends_on("otf2@1.4") - depends_on("cube@4.2.3") + version('2.1', 'bab9c2b021e51e2ba187feec442b96e6', + url='http://apps.fz-juelich.de/scalasca/releases/scalasca/2.1/dist/scalasca-2.1.tar.gz') - backend_user_provided = """\ -CC=cc -CXX=c++ -F77=f77 -FC=f90 -CFLAGS=-fPIC -CXXFLAGS=-fPIC -""" - frontend_user_provided = """\ -CC_FOR_BUILD=cc -CXX_FOR_BUILD=c++ -F77_FOR_BUILD=f70 -FC_FOR_BUILD=f90 -CFLAGS_FOR_BUILD=-fPIC -CXXFLAGS_FOR_BUILD=-fPIC -""" - mpi_user_provided = """\ -MPICC=mpicc -MPICXX=mpicxx -MPIF77=mpif77 -MPIFC=mpif90 -MPI_CFLAGS=-fPIC -MPI_CXXFLAGS=-fPIC -""" + depends_on("mpi") + ########## + # Hard-code dependencies for Scalasca according to what stated in the release page + # The OTF2 library path should be detected automatically from SCOREP + # SCALASCA 2.2.2 + depends_on("scorep@1.4:", when='@2.2.2') + depends_on("cube@4.3:", when='@2.2.2') + # SCALASCA 2.1 + depends_on("scorep@1.3", when='@2.1') + depends_on("cube@4.2:", when='@2.1') + ########## def install(self, spec, prefix): configure_args = ["--prefix=%s" % prefix, - "--with-custom-compilers", - "--with-otf2=%s" % spec['otf2'].prefix.bin, "--with-cube=%s" % spec['cube'].prefix.bin, "--enable-shared"] - configure(*configure_args) - - make() - make("install") - - # FIXME: Modify the configure line to suit your build system here. - configure("--prefix=%s" % prefix) - - # FIXME: Add logic to build and install here make() - make("install") + make("install")
\ No newline at end of file diff --git a/var/spack/packages/scorep/package.py b/var/spack/packages/scorep/package.py index 0820f2d8ac..5127e814b6 100644 --- a/var/spack/packages/scorep/package.py +++ b/var/spack/packages/scorep/package.py @@ -28,9 +28,9 @@ from spack import * class Scorep(Package): """ - The Score-P measurement infrastructure is a highly scalable and - easy-to-use tool suite for profiling, event tracing, and online - analysis of HPC applications.""" + The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event + tracing, and online analysis of HPC applications. + """ homepage = "http://www.vi-hps.org/projects/score-p" url = "http://www.vi-hps.org/upload/packages/scorep/scorep-1.2.3.tar.gz" @@ -55,15 +55,6 @@ class Scorep(Package): depends_on("mpi") depends_on("papi") - def get_compiler_config_line(self): - backend_user_provided = ['CC=%s' % self.compiler.cc_names[0], - 'CXX=%s' % self.compiler.cxx_names[0], - 'F77=%s' % self.compiler.f77_names[0] if len(self.compiler.f77_names) else "", - 'FC=%s' % self.compiler.fc_names[0] if len(self.compiler.fc_names) else "", - 'CFLAGS=-fPIC %s' % self.rpath_args, - 'CXXFLAGS=-fPIC %s'% self.rpath_args] - return backend_user_provided - def install(self, spec, prefix): configure = Executable( join_path(self.stage.source_path, 'configure') ) with working_dir('spack-build', create=True): @@ -73,8 +64,9 @@ class Scorep(Package): "--with-cube=%s" % spec['cube'].prefix.bin, "--with-papi-header=%s" % spec['papi'].prefix.include, "--with-papi-lib=%s" % spec['papi'].prefix.lib, - "--enable-shared"] - configure_args.extend(self.get_compiler_config_line()) + "--enable-shared", + "CFLAGS=-fPIC", + "CXXFLAGS=-fPIC"] configure(*configure_args) make() make("install") diff --git a/var/spack/packages/szip/package.py b/var/spack/packages/szip/package.py new file mode 100644 index 0000000000..c48c5b431e --- /dev/null +++ b/var/spack/packages/szip/package.py @@ -0,0 +1,21 @@ +from spack import * + +class Szip(Package): + """Szip is an implementation of the extended-Rice lossless compression algorithm. + It provides lossless compression of scientific data, and is provided with HDF + software products.""" + + homepage = "https://www.hdfgroup.org/doc_resource/SZIP/" + url = "http://www.hdfgroup.org/ftp/lib-external/szip/2.1/src/szip-2.1.tar.gz" + + version('2.1', '902f831bcefb69c6b635374424acbead') + + def install(self, spec, prefix): + configure('--prefix=%s' % prefix, + '--enable-production', + '--enable-shared', + '--enable-static', + '--enable-encoding') + + make() + make("install") diff --git a/var/spack/packages/texinfo/package.py b/var/spack/packages/texinfo/package.py index 460db65b3e..1b22c72e72 100644 --- a/var/spack/packages/texinfo/package.py +++ b/var/spack/packages/texinfo/package.py @@ -33,12 +33,12 @@ class Texinfo(Package): used by many non-GNU projects as well.FIXME: put a proper description of your package here. """ homepage = "https://www.gnu.org/software/texinfo/" - url = "http://ftp.gnu.org/gnu/texinfo/texinfo-6.0.tar.xz" + url = "http://ftp.gnu.org/gnu/texinfo/texinfo-6.0.tar.gz" - version('6.0', '02818e62a5b8ae0213a7ff572991bb50') - version('5.2', 'cb489df8a7ee9d10a236197aefdb32c5') - version('5.1', '52ee905a3b705020d2a1b6ec36d53ca6') - version('5.0', 'ef2fad34c71ddc95b20c7d6a08c0d7a6') + version('6.0', 'e1a2ef5dce5018b53f0f6eed45b247a7') + version('5.2', '1b8f98b80a8e6c50422125e07522e8db') + version('5.1', '54e250014fe698fb4832016158747c03') + version('5.0', '918432285abe6fe96c98355594c5656a') def install(self, spec, prefix): configure('--prefix=%s' % prefix) diff --git a/var/spack/packages/wget/package.py b/var/spack/packages/wget/package.py index c8fd025122..55728b0515 100644 --- a/var/spack/packages/wget/package.py +++ b/var/spack/packages/wget/package.py @@ -8,9 +8,10 @@ class Wget(Package): etc.""" homepage = "http://www.gnu.org/software/wget/" - url = "http://ftp.gnu.org/gnu/wget/wget-1.16.tar.xz" + url = "http://ftp.gnu.org/gnu/wget/wget-1.16.tar.gz" - version('1.16', 'fe102975ab3a6c049777883f1bb9ad07') + version('1.17', 'c4c4727766f24ac716936275014a0536') + version('1.16', '293a37977c41b5522f781d3a3a078426') depends_on("openssl") |