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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/metacarpa/package.py | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/metacarpa/package.py b/var/spack/repos/builtin/packages/metacarpa/package.py new file mode 100644 index 0000000000..f3ceb3fdc8 --- /dev/null +++ b/var/spack/repos/builtin/packages/metacarpa/package.py @@ -0,0 +1,41 @@ +# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * +from spack.pkg.builtin.boost import Boost + + +class Metacarpa(MakefilePackage): + """ + METACARPA is designed for meta-analysing genetic + association studies with overlapping or related samples, + when details of the overlap or relatedness are unknown. + It implements and expands a method first described by Province and Borecki. + """ + + homepage = "https://www.sanger.ac.uk/tool/metacarpa/" + url = "https://github.com/hmgu-itg/metacarpa/archive/refs/tags/1.0.1.tar.gz" + + version("1.0.1", sha256="7d8fc774a88bf75a53ef8f74462924abba9b99fccbaa9979654c01e4379fab91") + + depends_on("boost@1.60.0") + depends_on(Boost.with_default_variants) + depends_on("cmake") + build_system = "Makefile" + build_directory = "src" + + def edit(self, spec, prefix): + makefile = FileFilter("src/Makefile") + makefile.filter(r"^IDIR.*", "IDIR=" + spec["boost"].prefix.include) + makefile.filter(r"^LDIR.*", "LDIR=" + spec["boost"].prefix.lib) + + def install(self, spec, prefix): + mkdirp(prefix.src) + + install_tree("src", prefix.src) + + mkdirp(prefix.bin) + + install("src/metacarpa", prefix.bin) |