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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/discovardenovo/package.py | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/discovardenovo/package.py b/var/spack/repos/builtin/packages/discovardenovo/package.py new file mode 100644 index 0000000000..673d75be04 --- /dev/null +++ b/var/spack/repos/builtin/packages/discovardenovo/package.py @@ -0,0 +1,45 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Discovardenovo(AutotoolsPackage): + """DISCOVAR de novo is a large (and small) de novo genome assembler. + It quickly generates highly accurate and complete assemblies using the + same single library data as used by DISCOVAR. It currently doesn't + support variant calling, for that, please use DISCOVAR instead.""" + + homepage = "https://software.broadinstitute.org/software/discovar/blog/" + url = "ftp://ftp.broadinstitute.org/pub/crd/DiscovarDeNovo/latest_source_code/discovardenovo-52488.tar.gz" + + version('52488', '2b08c77b1b998d85be8048e5efb10358') + + # lots of compiler errors with GCC7, works with 4.8.5 + # and devs claim it works with 4.7 so I'm assuming 4.7-4.8'll work + conflicts('%gcc@5:') + conflicts('%gcc@:4.7.0') + + depends_on('samtools') + depends_on('jemalloc') |