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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-deepsig-biocomp/package.py | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-deepsig-biocomp/package.py b/var/spack/repos/builtin/packages/py-deepsig-biocomp/package.py new file mode 100644 index 0000000000..200812735e --- /dev/null +++ b/var/spack/repos/builtin/packages/py-deepsig-biocomp/package.py @@ -0,0 +1,36 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + + +from spack.package import * + + +class PyDeepsigBiocomp(PythonPackage): + """DeepSig - Predictor of signal peptides + in proteins based on deep learning""" + + homepage = "https://deepsig.biocomp.unibo.it" + + url = "https://github.com/BolognaBiocomp/deepsig/archive/refs/tags/v1.2.5.tar.gz" + + version("1.2.5", sha256="e954b815d63c221c564c7d3fe27123d7cd2c39b191d6107369ab095d506496e0") + + depends_on("python@3.8", type=("build", "run")) + depends_on("py-setuptools", type="build") + depends_on("py-biopython@1.78:", type=("build", "run")) + depends_on("py-keras@2.4.3", type=("build", "run")) + depends_on("py-tensorflow@2.2.0", type=("build", "run")) + depends_on("py-tensorboard", type=("build", "run")) + + @run_after("install") + def create_share_folder(self): + share_dir = join_path(self.prefix, "share", "deepsig") + mkdirp(share_dir) + mv = which("mv") + for d in ("models", "tools"): + mv(d, share_dir) + + def setup_run_environment(self, env): + env.set("DEEPSIG_ROOT", self.prefix.share.deepsig) |