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Diffstat (limited to 'var')
-rw-r--r-- | var/spack/repos/builtin/packages/raxml-ng/package.py | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/raxml-ng/package.py b/var/spack/repos/builtin/packages/raxml-ng/package.py new file mode 100644 index 0000000000..677050816e --- /dev/null +++ b/var/spack/repos/builtin/packages/raxml-ng/package.py @@ -0,0 +1,34 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RaxmlNg(CMakePackage): + """RAxML-NG is a phylogenetic tree inference tool which uses + maximum-likelihood (ML) optimality criterion. + + Its search heuristic is based on iteratively performing a series + of Subtree Pruning and Regrafting (SPR) moves, + which allows to quickly navigate to the best-known ML tree. + RAxML-NG is a successor of RAxML (Stamatakis 2014) and leverages + the highly optimized likelihood computation implemented in libpll + (Flouri et al. 2014).""" + + homepage = "https://github.com/amkozlov/raxml-ng/wiki" + url = "https://github.com/amkozlov/raxml-ng/archive/1.0.1.tar.gz" + git = "https://github.com/amkozlov/raxml-ng.git" + + version('1.0.1', submodules='True') + + variant("mpi", default=True, description="Use MPI") + + depends_on('bison') + depends_on('flex') + depends_on('gmp') + depends_on('mpi', when='+mpi') + + def cmake_args(self): + return [self.define_from_variants('USE_MPI', 'mpi')] |