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Diffstat (limited to 'var')
-rw-r--r-- | var/spack/repos/builtin/packages/snap-berkeley/package.py | 57 |
1 files changed, 57 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/snap-berkeley/package.py b/var/spack/repos/builtin/packages/snap-berkeley/package.py new file mode 100644 index 0000000000..9bd9cd961c --- /dev/null +++ b/var/spack/repos/builtin/packages/snap-berkeley/package.py @@ -0,0 +1,57 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class SnapBerkeley(MakefilePackage): + """SNAP is a fast and accurate aligner for short DNA reads. It is + optimized for modern read lengths of 100 bases or higher, and takes + advantage of these reads to align data quickly through a hash-based + indexing scheme.""" + + homepage = "http://snap.cs.berkeley.edu/" + url = "https://github.com/amplab/snap/archive/v1.0beta.18.tar.gz" + + version('1.0beta.18', '41e595fffa482e9eda1c3f69fb5dedeb') + version('0.15', 'a7d87cc822f052665a347ab0aa84d4de', preferred=True) + + depends_on('zlib') + + conflicts('%gcc@6:') + conflicts('%cce') + conflicts('%clang') + conflicts('%intel') + conflicts('%nag') + conflicts('%pgi') + conflicts('%xl') + conflicts('%xl_r') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + if self.spec.satisfies('@1.0beta.18:'): + install('snap-aligner', prefix.bin) + install('SNAPCommand', prefix.bin) + else: + install('snap', prefix.bin) |