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-rw-r--r--var/spack/repos/builtin/packages/nextflow/package.py1
-rw-r--r--var/spack/repos/builtin/packages/tower-agent/package.py29
-rw-r--r--var/spack/repos/builtin/packages/tower-cli/package.py34
3 files changed, 64 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/nextflow/package.py b/var/spack/repos/builtin/packages/nextflow/package.py
index f1c52543ca..8fefaace81 100644
--- a/var/spack/repos/builtin/packages/nextflow/package.py
+++ b/var/spack/repos/builtin/packages/nextflow/package.py
@@ -14,6 +14,7 @@ class Nextflow(Package):
maintainers = ['dialvarezs']
+ version('22.04.4', sha256='e5ebf9942af4569db9199e8528016d9a52f73010ed476049774a76b201cd4b10', expand=False)
version('22.04.3', sha256='a1a79c619200b9f2719e8467cd5b8fbcb427f43adf945233ba9e03cd2f2d814e', expand=False)
version('22.04.1', sha256='89ef482a53d2866a3cee84b3576053278b53507bde62db4ad05b1fcd63a9368a', expand=False)
version('22.04.0', sha256='8eba475aa395438ed222ff14df8fbe93928c14ffc68727a15b8308178edf9056', expand=False)
diff --git a/var/spack/repos/builtin/packages/tower-agent/package.py b/var/spack/repos/builtin/packages/tower-agent/package.py
new file mode 100644
index 0000000000..b74a27e73b
--- /dev/null
+++ b/var/spack/repos/builtin/packages/tower-agent/package.py
@@ -0,0 +1,29 @@
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+import platform
+
+from spack.package import *
+
+
+class TowerAgent(Package):
+ """Tower Agent allows Nextflow Tower to launch pipelines
+ on HPC clusters that do not allow direct access through
+ an SSH client.
+ """
+
+ homepage = "https://github.com/seqeralabs/tower-agent"
+
+ if platform.machine() == 'x86_64':
+ if platform.system() == 'Linux':
+ version('0.4.3',
+ sha256='1125e64d4e3342e77fcf7f6827f045e421084654fe8faafd5389e356e0613cc0',
+ url='https://github.com/seqeralabs/tower-agent/releases/download/v0.4.3/tw-agent-linux-x86_64',
+ expand=False)
+
+ def install(self, spec, prefix):
+ mkdirp(prefix.bin)
+ install(self.stage.archive_file, join_path(prefix.bin, "tw-agent"))
+ set_executable(join_path(prefix.bin, "tw-agent"))
diff --git a/var/spack/repos/builtin/packages/tower-cli/package.py b/var/spack/repos/builtin/packages/tower-cli/package.py
new file mode 100644
index 0000000000..a5ebac2d25
--- /dev/null
+++ b/var/spack/repos/builtin/packages/tower-cli/package.py
@@ -0,0 +1,34 @@
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+import platform
+
+from spack.package import *
+
+
+class TowerCli(Package):
+ """Tower on the Command Line brings Nextflow Tower concepts
+ including Pipelines, Actions and Compute Environments
+ to the terminal.
+ """
+
+ homepage = "https://github.com/seqeralabs/tower-cli"
+
+ if platform.machine() == 'x86_64':
+ if platform.system() == 'Darwin':
+ version('0.6.2',
+ sha256='2bcc17687d58d4c888e8d57b7f2f769a2940afb3266dc3c6c48b0af0cb490d91',
+ url='https://github.com/seqeralabs/tower-cli/releases/download/v0.6.2/tw-0.6.2-osx-x86_64',
+ expand=False)
+ elif platform.system() == 'Linux':
+ version('0.6.2',
+ sha256='02c6d141416b046b6e8b6f9723331fe0e39d37faa3561c47c152df4d33b37e50',
+ url='https://github.com/seqeralabs/tower-cli/releases/download/v0.6.2/tw-0.6.2-linux-x86_64',
+ expand=False)
+
+ def install(self, spec, prefix):
+ mkdirp(prefix.bin)
+ install(self.stage.archive_file, join_path(prefix.bin, "tw"))
+ set_executable(join_path(prefix.bin, "tw"))