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-rw-r--r--var/spack/repos/builtin/packages/caliper/package.py2
-rw-r--r--var/spack/repos/builtin/packages/libdwarf/package.py13
-rw-r--r--var/spack/repos/builtin/packages/lmod/package.py26
-rw-r--r--var/spack/repos/builtin/packages/lua-luafilesystem/package.py51
-rw-r--r--var/spack/repos/builtin/packages/lua/package.py9
-rw-r--r--var/spack/repos/builtin/packages/pcre/intel.patch12
-rw-r--r--var/spack/repos/builtin/packages/pcre/package.py3
-rw-r--r--var/spack/repos/builtin/packages/serf/package.py11
-rw-r--r--var/spack/repos/builtin/packages/trilinos/package.py207
9 files changed, 230 insertions, 104 deletions
diff --git a/var/spack/repos/builtin/packages/caliper/package.py b/var/spack/repos/builtin/packages/caliper/package.py
index 4b8fe0d8af..a424c73859 100644
--- a/var/spack/repos/builtin/packages/caliper/package.py
+++ b/var/spack/repos/builtin/packages/caliper/package.py
@@ -34,7 +34,7 @@ class Caliper(Package):
homepage = "https://github.com/LLNL/Caliper"
url = ""
- version('master', git='ssh://git@github.com:LLNL/Caliper.git')
+ version('master', git='https://github.com/LLNL/Caliper.git')
variant('mpi', default=False, description='Enable MPI function wrappers.')
diff --git a/var/spack/repos/builtin/packages/libdwarf/package.py b/var/spack/repos/builtin/packages/libdwarf/package.py
index c9c6e9404f..594271f655 100644
--- a/var/spack/repos/builtin/packages/libdwarf/package.py
+++ b/var/spack/repos/builtin/packages/libdwarf/package.py
@@ -23,11 +23,11 @@
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
-import os
# Only build certain parts of dwarf because the other ones break.
dwarf_dirs = ['libdwarf', 'dwarfdump2']
+
class Libdwarf(Package):
"""The DWARF Debugging Information Format is of interest to
programmers working on compilers and debuggers (and any one
@@ -45,12 +45,13 @@ class Libdwarf(Package):
list_url = homepage
version('20160507', 'ae32d6f9ece5daf05e2d4b14822ea811')
-
+ version('20130729', '4cc5e48693f7b93b7aa0261e63c0e21d')
+ version('20130207', '64b42692e947d5180e162e46c689dfbf')
+ version('20130126', 'ded74a5e90edb5a12aac3c29d260c5db')
depends_on("libelf")
parallel = False
-
def install(self, spec, prefix):
# dwarf build does not set arguments for ar properly
make.add_default_arg('ARFLAGS=rcs')
@@ -67,7 +68,11 @@ class Libdwarf(Package):
install('libdwarf.h', prefix.include)
install('dwarf.h', prefix.include)
- with working_dir('dwarfdump'):
+ if spec.satisfies('@20130126:20130729'):
+ dwarfdump_dir = 'dwarfdump2'
+ else:
+ dwarfdump_dir = 'dwarfdump'
+ with working_dir(dwarfdump_dir):
configure("--prefix=" + prefix)
# This makefile has strings of copy commands that
diff --git a/var/spack/repos/builtin/packages/lmod/package.py b/var/spack/repos/builtin/packages/lmod/package.py
index 0a8b9b4577..7d75866d52 100644
--- a/var/spack/repos/builtin/packages/lmod/package.py
+++ b/var/spack/repos/builtin/packages/lmod/package.py
@@ -23,7 +23,7 @@
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
-import os
+
class Lmod(Package):
"""
@@ -34,17 +34,25 @@ class Lmod(Package):
variable. Modulefiles for Library packages provide environment variables
that specify where the library and header files can be found.
"""
- homepage = "https://www.tacc.utexas.edu/research-development/tacc-projects/lmod"
- url = "http://sourceforge.net/projects/lmod/files/Lmod-6.0.1.tar.bz2/download"
+ homepage = 'https://www.tacc.utexas.edu/research-development/tacc-projects/lmod' # NOQA: ignore=E501
+ url = 'https://github.com/TACC/Lmod/archive/6.4.1.tar.gz'
+ version('6.4.1', '7978ba777c8aa41a4d8c05fec5f780f4')
+ version('6.3.7', '0fa4d5a24c41cae03776f781aa2dedc1')
version('6.0.1', '91abf52fe5033bd419ffe2842ebe7af9')
- depends_on("lua@5.2:")
+ depends_on('lua@5.2:')
+ depends_on('lua-luaposix')
+ depends_on('lua-luafilesystem')
+
+ parallel = False
+
+ def setup_environment(self, spack_env, run_env):
+ stage_lua_path = join_path(
+ self.stage.path, 'Lmod-{version}', 'src', '?.lua')
+ spack_env.append_path('LUA_PATH', stage_lua_path.format(
+ version=self.version), separator=';')
def install(self, spec, prefix):
- # Add our lua to PATH
- os.environ['PATH'] = spec['lua'].prefix.bin + ';' + os.environ['PATH']
-
configure('--prefix=%s' % prefix)
- make()
- make("install")
+ make('install')
diff --git a/var/spack/repos/builtin/packages/lua-luafilesystem/package.py b/var/spack/repos/builtin/packages/lua-luafilesystem/package.py
new file mode 100644
index 0000000000..a61b9dd675
--- /dev/null
+++ b/var/spack/repos/builtin/packages/lua-luafilesystem/package.py
@@ -0,0 +1,51 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class LuaLuafilesystem(Package):
+ """
+ LuaFileSystem is a Lua library developed to complement the set of
+ functions related to file systems offered by the standard Lua distribution.
+
+ LuaFileSystem offers a portable way to access the underlying directory
+ structure and file attributes.
+
+ LuaFileSystem is free software and uses the same license as Lua 5.1
+ """
+ homepage = 'http://keplerproject.github.io/luafilesystem'
+ url = 'https://github.com/keplerproject/luafilesystem/archive/v_1_6_3.tar.gz'
+
+ version('1_6_3', 'd0552c7e5a082f5bb2865af63fb9dc95')
+
+ extends('lua')
+
+ def install(self, spec, prefix):
+ rockspec_fmt = join_path(self.stage.path,
+ 'luafilesystem-v_{version.underscored}',
+ 'rockspecs',
+ 'luafilesystem-{version.dotted}-1.rockspec')
+ luarocks('--tree=' + prefix, 'install',
+ rockspec_fmt.format(version=self.spec.version))
diff --git a/var/spack/repos/builtin/packages/lua/package.py b/var/spack/repos/builtin/packages/lua/package.py
index 170f90516a..8ce4a7b94d 100644
--- a/var/spack/repos/builtin/packages/lua/package.py
+++ b/var/spack/repos/builtin/packages/lua/package.py
@@ -57,7 +57,7 @@ class Lua(Package):
placement='luarocks')
def install(self, spec, prefix):
- if spec.satisfies("arch=darwin-i686") or spec.satisfies("arch=darwin-x86_64"):
+ if spec.satisfies("arch=darwin-i686") or spec.satisfies("arch=darwin-x86_64"): # NOQA: ignore=E501
target = 'macosx'
else:
target = 'linux'
@@ -105,6 +105,9 @@ class Lua(Package):
spack_env.set('LUA_PATH', ';'.join(lua_patterns), separator=';')
spack_env.set('LUA_CPATH', ';'.join(lua_cpatterns), separator=';')
+ # Add LUA to PATH for dependent packages
+ spack_env.prepend_path('PATH', self.prefix.bin)
+
# For run time environment set only the path for extension_spec and
# prepend it to LUAPATH
if extension_spec.package.extends(self.spec):
@@ -153,5 +156,5 @@ class Lua(Package):
"""
# Lua extension builds can have lua and luarocks executable functions
module.lua = Executable(join_path(self.spec.prefix.bin, 'lua'))
- module.luarocks = Executable(join_path(self.spec.prefix.bin,
- 'luarocks'))
+ module.luarocks = Executable(
+ join_path(self.spec.prefix.bin, 'luarocks'))
diff --git a/var/spack/repos/builtin/packages/pcre/intel.patch b/var/spack/repos/builtin/packages/pcre/intel.patch
new file mode 100644
index 0000000000..f160f55e1b
--- /dev/null
+++ b/var/spack/repos/builtin/packages/pcre/intel.patch
@@ -0,0 +1,12 @@
+diff -up pcre-8.38/pcrecpp.cc.intel pcre-8.38/pcrecpp.cc
+--- pcre-8.38/pcrecpp.cc.intel 2014-09-15 07:48:59.000000000 -0600
++++ pcre-8.38/pcrecpp.cc 2016-06-08 16:16:56.702721214 -0600
+@@ -66,7 +66,7 @@ Arg RE::no_arg((void*)NULL);
+ // inclusive test if we ever needed it. (Note that not only the
+ // __attribute__ syntax, but also __USER_LABEL_PREFIX__, are
+ // gnu-specific.)
+-#if defined(__GNUC__) && __GNUC__ >= 3 && defined(__ELF__)
++#if defined(__GNUC__) && __GNUC__ >= 3 && defined(__ELF__) && !defined(__INTEL_COMPILER)
+ # define ULP_AS_STRING(x) ULP_AS_STRING_INTERNAL(x)
+ # define ULP_AS_STRING_INTERNAL(x) #x
+ # define USER_LABEL_PREFIX_STR ULP_AS_STRING(__USER_LABEL_PREFIX__)
diff --git a/var/spack/repos/builtin/packages/pcre/package.py b/var/spack/repos/builtin/packages/pcre/package.py
index 7a9f3b911d..8e0f83110e 100644
--- a/var/spack/repos/builtin/packages/pcre/package.py
+++ b/var/spack/repos/builtin/packages/pcre/package.py
@@ -24,6 +24,7 @@
##############################################################################
from spack import *
+
class Pcre(Package):
"""The PCRE package contains Perl Compatible Regular Expression
libraries. These are useful for implementing regular expression
@@ -34,6 +35,8 @@ class Pcre(Package):
version('8.36', 'b767bc9af0c20bc9c1fe403b0d41ad97')
version('8.38', '00aabbfe56d5a48b270f999b508c5ad2')
+ patch("intel.patch")
+
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
diff --git a/var/spack/repos/builtin/packages/serf/package.py b/var/spack/repos/builtin/packages/serf/package.py
index 3b1d08889c..817db68241 100644
--- a/var/spack/repos/builtin/packages/serf/package.py
+++ b/var/spack/repos/builtin/packages/serf/package.py
@@ -24,8 +24,10 @@
##############################################################################
from spack import *
+
class Serf(Package):
- """Apache Serf - a high performance C-based HTTP client library built upon the Apache Portable Runtime (APR) library"""
+ """Apache Serf - a high performance C-based HTTP client library
+ built upon the Apache Portable Runtime (APR) library"""
homepage = 'https://serf.apache.org/'
url = 'https://archive.apache.org/dist/serf/serf-1.3.8.tar.bz2'
@@ -36,6 +38,7 @@ class Serf(Package):
depends_on('scons')
depends_on('expat')
depends_on('openssl')
+ depends_on('zlib')
def install(self, spec, prefix):
scons = which("scons")
@@ -44,8 +47,10 @@ class Serf(Package):
options.append('APR=%s' % spec['apr'].prefix)
options.append('APU=%s' % spec['apr-util'].prefix)
options.append('OPENSSL=%s' % spec['openssl'].prefix)
- options.append('LINKFLAGS=-L%s/lib' % spec['expat'].prefix)
- options.append('CPPFLAGS=-I%s/include' % spec['expat'].prefix)
+ options.append('LINKFLAGS=-L%s/lib -L%s/lib' %
+ (spec['expat'].prefix, spec['zlib'].prefix))
+ options.append('CPPFLAGS=-I%s/include -I%s/include' %
+ (spec['expat'].prefix, spec['zlib'].prefix))
scons(*options)
scons('install')
diff --git a/var/spack/repos/builtin/packages/trilinos/package.py b/var/spack/repos/builtin/packages/trilinos/package.py
index 1eaec86405..6913d79dcc 100644
--- a/var/spack/repos/builtin/packages/trilinos/package.py
+++ b/var/spack/repos/builtin/packages/trilinos/package.py
@@ -23,18 +23,23 @@
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
-import os, sys, glob
+import os
+import sys
-# Trilinos is complicated to build, as an inspiration a couple of links to other repositories which build it:
+# Trilinos is complicated to build, as an inspiration a couple of links to
+# other repositories which build it:
# https://github.com/hpcugent/easybuild-easyblocks/blob/master/easybuild/easyblocks/t/trilinos.py#L111
# https://github.com/koecher/candi/blob/master/deal.II-toolchain/packages/trilinos.package
# https://gitlab.com/configurations/cluster-config/blob/master/trilinos.sh
-# https://github.com/Homebrew/homebrew-science/blob/master/trilinos.rb
-# and some relevant documentation/examples:
+# https://github.com/Homebrew/homebrew-science/blob/master/trilinos.rb and some
+# relevant documentation/examples:
# https://github.com/trilinos/Trilinos/issues/175
+
+
class Trilinos(Package):
- """The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented
- software framework for the solution of large-scale, complex multi-physics engineering and scientific problems.
+ """The Trilinos Project is an effort to develop algorithms and enabling
+ technologies within an object-oriented software framework for the solution
+ of large-scale, complex multi-physics engineering and scientific problems.
A unique design feature of Trilinos is its focus on packages.
"""
homepage = "https://trilinos.org/"
@@ -54,49 +59,51 @@ class Trilinos(Package):
variant('hypre', default=True, description='Compile with Hypre preconditioner')
variant('hdf5', default=True, description='Compile with HDF5')
variant('suite-sparse', default=True, description='Compile with SuiteSparse solvers')
- # not everyone has py-numpy activated, keep it disabled by default to avoid configure errors
+ # not everyone has py-numpy activated, keep it disabled by default to avoid
+ # configure errors
variant('python', default=False, description='Build python wrappers')
variant('shared', default=True, description='Enables the build of shared libraries')
variant('debug', default=False, description='Builds a debug version of the libraries')
+ variant('boost', default=True, description='Compile with Boost')
# Everything should be compiled with -fpic
depends_on('blas')
depends_on('lapack')
- depends_on('boost')
+ depends_on('boost', when='+boost')
depends_on('matio')
depends_on('glm')
depends_on('swig')
- depends_on('metis@5:',when='+metis')
- depends_on('suite-sparse',when='+suite-sparse')
+ depends_on('metis@5:', when='+metis')
+ depends_on('suite-sparse', when='+suite-sparse')
# MPI related dependencies
depends_on('mpi')
depends_on('netcdf+mpi')
- depends_on('parmetis',when='+metis')
- # Trilinos' Tribits config system is limited which makes it
- # very tricky to link Amesos with static MUMPS, see
+ depends_on('parmetis', when='+metis')
+ # Trilinos' Tribits config system is limited which makes it very tricky to
+ # link Amesos with static MUMPS, see
# https://trilinos.org/docs/dev/packages/amesos2/doc/html/classAmesos2_1_1MUMPS.html
- # One could work it out by getting linking flags from mpif90 --showme:link (or alike)
- # and adding results to -DTrilinos_EXTRA_LINK_FLAGS
- # together with Blas and Lapack and ScaLAPACK and Blacs and -lgfortran and
- # it may work at the end. But let's avoid all this by simply using shared libs
- depends_on('mumps@5.0:+mpi+shared',when='+mumps')
- depends_on('scalapack',when='+mumps')
- depends_on('superlu-dist',when='+superlu-dist')
- depends_on('hypre~internal-superlu',when='+hypre')
- depends_on('hdf5+mpi',when='+hdf5')
-
- depends_on('python',when='+python')
+ # One could work it out by getting linking flags from mpif90 --showme:link
+ # (or alike) and adding results to -DTrilinos_EXTRA_LINK_FLAGS together
+ # with Blas and Lapack and ScaLAPACK and Blacs and -lgfortran and it may
+ # work at the end. But let's avoid all this by simply using shared libs
+ depends_on('mumps@5.0:+mpi+shared', when='+mumps')
+ depends_on('scalapack', when='+mumps')
+ depends_on('superlu-dist', when='+superlu-dist')
+ depends_on('hypre~internal-superlu', when='+hypre')
+ depends_on('hdf5+mpi', when='+hdf5')
+ depends_on('python', when='+python')
patch('umfpack_from_suitesparse.patch')
# check that the combination of variants makes sense
def variants_check(self):
if '+superlu-dist' in self.spec and self.spec.satisfies('@:11.4.3'):
- # For Trilinos v11 we need to force SuperLUDist=OFF,
- # since only the deprecated SuperLUDist v3.3 together with an Amesos patch
- # is working.
- raise RuntimeError('The superlu-dist variant can only be used with Trilinos @12.0.1:')
+ # For Trilinos v11 we need to force SuperLUDist=OFF, since only the
+ # deprecated SuperLUDist v3.3 together with an Amesos patch is
+ # working.
+ raise RuntimeError('The superlu-dist variant can only be used' +
+ ' with Trilinos @12.0.1:')
def install(self, spec, prefix):
self.variants_check()
@@ -106,54 +113,75 @@ class Trilinos(Package):
options.extend(std_cmake_args)
mpi_bin = spec['mpi'].prefix.bin
- options.extend(['-DTrilinos_ENABLE_ALL_PACKAGES:BOOL=ON',
- '-DTrilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON',
- '-DTrilinos_VERBOSE_CONFIGURE:BOOL=OFF',
- '-DTrilinos_ENABLE_TESTS:BOOL=OFF',
- '-DTrilinos_ENABLE_EXAMPLES:BOOL=OFF',
- '-DCMAKE_BUILD_TYPE:STRING=%s' % ('DEBUG' if '+debug' in spec else 'RELEASE'),
- '-DBUILD_SHARED_LIBS:BOOL=%s' % ('ON' if '+shared' in spec else 'OFF'),
- '-DTPL_ENABLE_MPI:BOOL=ON',
- '-DMPI_BASE_DIR:PATH=%s' % spec['mpi'].prefix,
- '-DTPL_ENABLE_BLAS=ON',
- '-DBLAS_LIBRARY_NAMES=blas', # FIXME: don't hardcode names
- '-DBLAS_LIBRARY_DIRS=%s' % spec['blas'].prefix.lib,
- '-DTPL_ENABLE_LAPACK=ON',
- '-DLAPACK_LIBRARY_NAMES=lapack',
- '-DLAPACK_LIBRARY_DIRS=%s' % spec['lapack'].prefix,
- '-DTPL_ENABLE_Boost:BOOL=ON',
- '-DBoost_INCLUDE_DIRS:PATH=%s' % spec['boost'].prefix.include,
- '-DBoost_LIBRARY_DIRS:PATH=%s' % spec['boost'].prefix.lib,
- '-DTrilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON',
- '-DTrilinos_ENABLE_CXX11:BOOL=ON',
- '-DTPL_ENABLE_Netcdf:BOOL=ON',
- '-DTPL_ENABLE_HYPRE:BOOL=%s' % ('ON' if '+hypre' in spec else 'OFF'),
- '-DTPL_ENABLE_HDF5:BOOL=%s' % ('ON' if '+hdf5' in spec else 'OFF'),
- ])
+ options.extend([
+ '-DTrilinos_ENABLE_ALL_PACKAGES:BOOL=ON',
+ '-DTrilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON',
+ '-DTrilinos_VERBOSE_CONFIGURE:BOOL=OFF',
+ '-DTrilinos_ENABLE_TESTS:BOOL=OFF',
+ '-DTrilinos_ENABLE_EXAMPLES:BOOL=OFF',
+ '-DCMAKE_BUILD_TYPE:STRING=%s' % (
+ 'DEBUG' if '+debug' in spec else 'RELEASE'),
+ '-DBUILD_SHARED_LIBS:BOOL=%s' % (
+ 'ON' if '+shared' in spec else 'OFF'),
+ '-DTPL_ENABLE_MPI:BOOL=ON',
+ '-DMPI_BASE_DIR:PATH=%s' % spec['mpi'].prefix,
+ '-DTPL_ENABLE_BLAS=ON',
+ '-DBLAS_LIBRARY_NAMES=blas', # FIXME: don't hardcode names
+ '-DBLAS_LIBRARY_DIRS=%s' % spec['blas'].prefix.lib,
+ '-DTPL_ENABLE_LAPACK=ON',
+ '-DLAPACK_LIBRARY_NAMES=lapack',
+ '-DLAPACK_LIBRARY_DIRS=%s' % spec['lapack'].prefix,
+ '-DTrilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON',
+ '-DTrilinos_ENABLE_CXX11:BOOL=ON',
+ '-DTPL_ENABLE_Netcdf:BOOL=ON',
+ '-DTPL_ENABLE_HYPRE:BOOL=%s' % (
+ 'ON' if '+hypre' in spec else 'OFF'),
+ '-DTPL_ENABLE_HDF5:BOOL=%s' % (
+ 'ON' if '+hdf5' in spec else 'OFF'),
+ ])
+
+ if '+boost' in spec:
+ options.extend([
+ '-DTPL_ENABLE_Boost:BOOL=ON',
+ '-DBoost_INCLUDE_DIRS:PATH=%s' % spec['boost'].prefix.include,
+ '-DBoost_LIBRARY_DIRS:PATH=%s' % spec['boost'].prefix.lib
+ ])
+ else:
+ options.extend(['-DTPL_ENABLE_Boost:BOOL=OFF'])
# Fortran lib
- libgfortran = os.path.dirname (os.popen('%s --print-file-name libgfortran.a' % join_path(mpi_bin,'mpif90') ).read())
+ libgfortran = os.path.dirname(os.popen(
+ '%s --print-file-name libgfortran.a' %
+ join_path(mpi_bin, 'mpif90')).read())
options.extend([
- '-DTrilinos_EXTRA_LINK_FLAGS:STRING=-L%s/ -lgfortran' % libgfortran,
+ '-DTrilinos_EXTRA_LINK_FLAGS:STRING=-L%s/ -lgfortran' % (
+ libgfortran),
'-DTrilinos_ENABLE_Fortran=ON'
])
# for build-debug only:
- #options.extend([
- # '-DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE'
- #])
+ # options.extend([
+ # '-DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE'
+ # ])
# suite-sparse related
if '+suite-sparse' in spec:
options.extend([
- '-DTPL_ENABLE_Cholmod:BOOL=OFF', # FIXME: Trilinos seems to be looking for static libs only, patch CMake TPL file?
- #'-DTPL_ENABLE_Cholmod:BOOL=ON',
- #'-DCholmod_LIBRARY_DIRS:PATH=%s' % spec['suite-sparse'].prefix.lib,
- #'-DCholmod_INCLUDE_DIRS:PATH=%s' % spec['suite-sparse'].prefix.include,
+ # FIXME: Trilinos seems to be looking for static libs only,
+ # patch CMake TPL file?
+ '-DTPL_ENABLE_Cholmod:BOOL=OFF',
+ # '-DTPL_ENABLE_Cholmod:BOOL=ON',
+ # '-DCholmod_LIBRARY_DIRS:PATH=%s' % (
+ # spec['suite-sparse'].prefix.lib,
+ # '-DCholmod_INCLUDE_DIRS:PATH=%s' % (
+ # spec['suite-sparse'].prefix.include,
'-DTPL_ENABLE_UMFPACK:BOOL=ON',
- '-DUMFPACK_LIBRARY_DIRS:PATH=%s' % spec['suite-sparse'].prefix.lib,
- '-DUMFPACK_INCLUDE_DIRS:PATH=%s' % spec['suite-sparse'].prefix.include,
- '-DUMFPACK_LIBRARY_NAMES=umfpack;amd;colamd;cholmod;suitesparseconfig'
+ '-DUMFPACK_LIBRARY_DIRS:PATH=%s' % (
+ spec['suite-sparse'].prefix.lib),
+ '-DUMFPACK_INCLUDE_DIRS:PATH=%s' % (
+ spec['suite-sparse'].prefix.include),
+ '-DUMFPACK_LIBRARY_NAMES=umfpack;amd;colamd;cholmod;' +
+ 'suitesparseconfig'
])
else:
options.extend([
@@ -169,9 +197,11 @@ class Trilinos(Package):
'-DMETIS_LIBRARY_NAMES=metis',
'-DTPL_METIS_INCLUDE_DIRS=%s' % spec['metis'].prefix.include,
'-DTPL_ENABLE_ParMETIS:BOOL=ON',
- '-DParMETIS_LIBRARY_DIRS=%s;%s' % (spec['parmetis'].prefix.lib,spec['metis'].prefix.lib),
+ '-DParMETIS_LIBRARY_DIRS=%s;%s' % (
+ spec['parmetis'].prefix.lib, spec['metis'].prefix.lib),
'-DParMETIS_LIBRARY_NAMES=parmetis;metis',
- '-DTPL_ParMETIS_INCLUDE_DIRS=%s' % spec['parmetis'].prefix.include
+ '-DTPL_ParMETIS_INCLUDE_DIRS=%s' % (
+ spec['parmetis'].prefix.include)
])
else:
options.extend([
@@ -184,11 +214,14 @@ class Trilinos(Package):
options.extend([
'-DTPL_ENABLE_MUMPS:BOOL=ON',
'-DMUMPS_LIBRARY_DIRS=%s' % spec['mumps'].prefix.lib,
- '-DMUMPS_LIBRARY_NAMES=dmumps;mumps_common;pord', # order is important!
+ # order is important!
+ '-DMUMPS_LIBRARY_NAMES=dmumps;mumps_common;pord',
'-DTPL_ENABLE_SCALAPACK:BOOL=ON',
- '-DSCALAPACK_LIBRARY_NAMES=scalapack' # FIXME: for MKL it's mkl_scalapack_lp64;mkl_blacs_mpich_lp64
+ # FIXME: for MKL it's mkl_scalapack_lp64;mkl_blacs_mpich_lp64
+ '-DSCALAPACK_LIBRARY_NAMES=scalapack'
])
- # see https://github.com/trilinos/Trilinos/blob/master/packages/amesos/README-MUMPS
+ # see
+ # https://github.com/trilinos/Trilinos/blob/master/packages/amesos/README-MUMPS
cxx_flags.extend([
'-DMUMPS_5_0'
])
@@ -201,16 +234,20 @@ class Trilinos(Package):
# superlu-dist:
if '+superlu-dist' in spec:
# Amesos, conflicting types of double and complex SLU_D
- # see https://trilinos.org/pipermail/trilinos-users/2015-March/004731.html
- # and https://trilinos.org/pipermail/trilinos-users/2015-March/004802.html
+ # see
+ # https://trilinos.org/pipermail/trilinos-users/2015-March/004731.html
+ # and
+ # https://trilinos.org/pipermail/trilinos-users/2015-March/004802.html
options.extend([
'-DTeuchos_ENABLE_COMPLEX:BOOL=OFF',
'-DKokkosTSQR_ENABLE_Complex:BOOL=OFF'
])
options.extend([
'-DTPL_ENABLE_SuperLUDist:BOOL=ON',
- '-DSuperLUDist_LIBRARY_DIRS=%s' % spec['superlu-dist'].prefix.lib,
- '-DSuperLUDist_INCLUDE_DIRS=%s' % spec['superlu-dist'].prefix.include
+ '-DSuperLUDist_LIBRARY_DIRS=%s' %
+ spec['superlu-dist'].prefix.lib,
+ '-DSuperLUDist_INCLUDE_DIRS=%s' %
+ spec['superlu-dist'].prefix.include
])
if spec.satisfies('^superlu-dist@4.0:'):
options.extend([
@@ -221,7 +258,6 @@ class Trilinos(Package):
'-DTPL_ENABLE_SuperLUDist:BOOL=OFF',
])
-
# python
if '+python' in spec:
options.extend([
@@ -248,23 +284,26 @@ class Trilinos(Package):
'-DTrilinos_ENABLE_FEI=OFF'
])
-
with working_dir('spack-build', create=True):
cmake('..', *options)
make()
make('install')
- # When trilinos is built with Python, libpytrilinos is included through
- # cmake configure files. Namely, Trilinos_LIBRARIES in TrilinosConfig.cmake
- # contains pytrilinos. This leads to a run-time error:
- # Symbol not found: _PyBool_Type
- # and prevents Trilinos to be used in any C++ code, which links executable
- # against the libraries listed in Trilinos_LIBRARIES.
- # See https://github.com/Homebrew/homebrew-science/issues/2148#issuecomment-103614509
+ # When trilinos is built with Python, libpytrilinos is included
+ # through cmake configure files. Namely, Trilinos_LIBRARIES in
+ # TrilinosConfig.cmake contains pytrilinos. This leads to a
+ # run-time error: Symbol not found: _PyBool_Type and prevents
+ # Trilinos to be used in any C++ code, which links executable
+ # against the libraries listed in Trilinos_LIBRARIES. See
+ # https://github.com/Homebrew/homebrew-science/issues/2148#issuecomment-103614509
# A workaround it to remove PyTrilinos from the COMPONENTS_LIST :
if '+python' in self.spec:
- filter_file(r'(SET\(COMPONENTS_LIST.*)(PyTrilinos;)(.*)', (r'\1\3'), '%s/cmake/Trilinos/TrilinosConfig.cmake' % prefix.lib)
+ filter_file(r'(SET\(COMPONENTS_LIST.*)(PyTrilinos;)(.*)',
+ (r'\1\3'),
+ '%s/cmake/Trilinos/TrilinosConfig.cmake' %
+ prefix.lib)
- # The shared libraries are not installed correctly on Darwin; correct this
+ # The shared libraries are not installed correctly on Darwin;
+ # correct this
if (sys.platform == 'darwin') and ('+shared' in spec):
fix_darwin_install_name(prefix.lib)
generated by cgit v1.2.3-60-g2f50 (git 2.42.0) at 2024-07-05 02:17:26 +0000