diff options
Diffstat (limited to 'var')
-rw-r--r-- | var/spack/packages/automaded/package.py | 51 | ||||
-rw-r--r-- | var/spack/packages/bib2xhtml/package.py | 27 | ||||
-rw-r--r-- | var/spack/packages/callpath/package.py | 1 | ||||
-rw-r--r-- | var/spack/packages/cmake/package.py | 2 | ||||
-rw-r--r-- | var/spack/packages/dyninst/package.py | 2 | ||||
-rw-r--r-- | var/spack/packages/launchmon/package.py | 2 | ||||
-rw-r--r-- | var/spack/packages/libNBC/package.py | 43 | ||||
-rw-r--r-- | var/spack/packages/libunwind/package.py | 2 | ||||
-rw-r--r-- | var/spack/packages/mpich/package.py | 40 | ||||
-rw-r--r-- | var/spack/packages/netgauge/package.py | 43 | ||||
-rw-r--r-- | var/spack/packages/openmpi/package.py | 30 | ||||
-rw-r--r-- | var/spack/packages/scalasca/package.py | 38 | ||||
-rw-r--r-- | var/spack/packages/scr/package.py | 3 | ||||
-rw-r--r-- | var/spack/packages/spindle/package.py | 5 | ||||
-rw-r--r-- | var/spack/packages/stat/package.py | 4 | ||||
-rw-r--r-- | var/spack/packages/sundials/package.py | 39 |
16 files changed, 307 insertions, 25 deletions
diff --git a/var/spack/packages/automaded/package.py b/var/spack/packages/automaded/package.py new file mode 100644 index 0000000000..9fbd93e3b3 --- /dev/null +++ b/var/spack/packages/automaded/package.py @@ -0,0 +1,51 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://scalability-llnl.github.io/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + +class Automaded(Package): + """AutomaDeD (Automata-based Debugging for Dissimilar parallel + tasks) is a tool for automatic diagnosis of performance and + correctness problems in MPI applications. It creates + control-flow models of each MPI process and, when a failure + occurs, these models are leveraged to find the origin of + problems automatically. MPI calls are intercepted (using + wrappers) to create the models. When an MPI application hangs, + AutomaDeD creates a progress-dependence graph that helps + finding the process (or group of processes) that caused the hang. + """ + + homepage = "https://github.com/scalability-llnl/AutomaDeD" + url = "https://github.com/scalability-llnl/AutomaDeD/archive/v1.0.tar.gz" + + version('1.0', '16a3d4def2c4c77d0bc4b21de8b3ab03') + + depends_on('mpi') + depends_on('boost') + depends_on('callpath') + + def install(self, spec, prefix): + cmake("-DSTATE_TRACKER_WITH_CALLPATH=ON", *std_cmake_args) + make() + make("install") diff --git a/var/spack/packages/bib2xhtml/package.py b/var/spack/packages/bib2xhtml/package.py new file mode 100644 index 0000000000..7f8e0cfe5a --- /dev/null +++ b/var/spack/packages/bib2xhtml/package.py @@ -0,0 +1,27 @@ +from spack import * +from glob import glob + +class Bib2xhtml(Package): + """bib2xhtml is a program that converts BibTeX files into HTML.""" + homepage = "http://www.spinellis.gr/sw/textproc/bib2xhtml/" + url='http://www.spinellis.gr/sw/textproc/bib2xhtml/bib2xhtml-v3.0-15-gf506.tar.gz' + + version('3.0-15-gf506', 'a26ba02fe0053bbbf2277bdf0acf8645') + + def url_for_version(self, v): + return ('http://www.spinellis.gr/sw/textproc/bib2xhtml/bib2xhtml-v%s.tar.gz' % v) + + def install(self, spec, prefix): + # Add the bst include files to the install directory + bst_include = join_path(prefix.share, 'bib2xhtml') + mkdirp(bst_include) + for bstfile in glob('html-*bst'): + install(bstfile, bst_include) + + # Install the script and point it at the user's favorite perl + # and the bst include directory. + mkdirp(prefix.bin) + install('bib2xhtml', prefix.bin) + filter_file(r'#!/usr/bin/perl', + '#!/usr/bin/env BSTINPUTS=%s perl' % bst_include, + join_path(prefix.bin, 'bib2xhtml')) diff --git a/var/spack/packages/callpath/package.py b/var/spack/packages/callpath/package.py index 6102458291..f8a1eab9f7 100644 --- a/var/spack/packages/callpath/package.py +++ b/var/spack/packages/callpath/package.py @@ -31,6 +31,7 @@ class Callpath(Package): homepage = "https://github.com/scalability-llnl/callpath" url = "https://github.com/scalability-llnl/callpath/archive/v1.0.1.tar.gz" + version('1.0.2', 'b1994d5ee7c7db9d27586fc2dcf8f373') version('1.0.1', '0047983d2a52c5c335f8ba7f5bab2325') depends_on("libelf") diff --git a/var/spack/packages/cmake/package.py b/var/spack/packages/cmake/package.py index ca6553df84..890af9baa9 100644 --- a/var/spack/packages/cmake/package.py +++ b/var/spack/packages/cmake/package.py @@ -25,6 +25,8 @@ from spack import * class Cmake(Package): + """A cross-platform, open-source build system. CMake is a family of + tools designed to build, test and package software.""" homepage = 'https://www.cmake.org' url = 'http://www.cmake.org/files/v2.8/cmake-2.8.10.2.tar.gz' diff --git a/var/spack/packages/dyninst/package.py b/var/spack/packages/dyninst/package.py index 069237f7ff..df19ac7bc0 100644 --- a/var/spack/packages/dyninst/package.py +++ b/var/spack/packages/dyninst/package.py @@ -25,6 +25,8 @@ from spack import * class Dyninst(Package): + """API for dynamic binary instrumentation. Modify programs while they + are executing without recompiling, re-linking, or re-executing.""" homepage = "https://paradyn.org" url = "http://www.dyninst.org/sites/default/files/downloads/dyninst/8.1.2/DyninstAPI-8.1.2.tgz" list_url = "http://www.dyninst.org/downloads/dyninst-8.x" diff --git a/var/spack/packages/launchmon/package.py b/var/spack/packages/launchmon/package.py index b6773a85bc..bdf988bdd3 100644 --- a/var/spack/packages/launchmon/package.py +++ b/var/spack/packages/launchmon/package.py @@ -25,6 +25,8 @@ from spack import * class Launchmon(Package): + """Software infrastructure that enables HPC run-time tools to + co-locate tool daemons with a parallel job.""" homepage = "http://sourceforge.net/projects/launchmon" url = "http://downloads.sourceforge.net/project/launchmon/launchmon/1.0.1%20release/launchmon-1.0.1.tar.gz" diff --git a/var/spack/packages/libNBC/package.py b/var/spack/packages/libNBC/package.py new file mode 100644 index 0000000000..6d08f3219c --- /dev/null +++ b/var/spack/packages/libNBC/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://scalability-llnl.github.io/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + +class Libnbc(Package): + """LibNBC is a prototypic implementation of a nonblocking + interface for MPI collective operations. Based on ANSI C and + MPI-1, it supports all MPI-1 collective operations in a + nonblocking manner. LibNBC is distributed under the BSD license. + """ + homepage = "http://unixer.de/research/nbcoll/libnbc/" + url = "http://unixer.de/research/nbcoll/libnbc/libNBC-1.1.1.tar.gz" + + version('1.1.1', 'ece5c94992591a9fa934a90e5dbe50ce') + + depends_on("mpi") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/libunwind/package.py b/var/spack/packages/libunwind/package.py index aeadc85eb3..239fcbcfd5 100644 --- a/var/spack/packages/libunwind/package.py +++ b/var/spack/packages/libunwind/package.py @@ -25,6 +25,8 @@ from spack import * class Libunwind(Package): + """A portable and efficient C programming interface (API) to determine + the call-chain of a program.""" homepage = "http://www.nongnu.org/libunwind/" url = "http://download.savannah.gnu.org/releases/libunwind/libunwind-1.1.tar.gz" diff --git a/var/spack/packages/mpich/package.py b/var/spack/packages/mpich/package.py index 19a1efe9c3..57378626ab 100644 --- a/var/spack/packages/mpich/package.py +++ b/var/spack/packages/mpich/package.py @@ -23,6 +23,7 @@ # Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * +import os class Mpich(Package): """MPICH is a high performance and widely portable implementation of @@ -38,8 +39,41 @@ class Mpich(Package): provides('mpi@:1', when='@1:') def install(self, spec, prefix): - configure( - "--prefix=" + prefix, - "--enable-shared") + config_args = ["--prefix=" + prefix, + "--enable-shared"] + + # TODO: Spack should make it so that you can't actually find + # these compilers if they're "disabled" for the current + # compiler configuration. + if not self.compiler.f77: + config_args.append("--disable-f77") + + if not self.compiler.fc: + config_args.append("--disable-fc") + + configure(*config_args) make() make("install") + + self.filter_compilers() + + + def filter_compilers(self): + """Run after install to make the MPI compilers use the + compilers that Spack built the package with. + + If this isn't done, they'll have CC, CXX, F77, and FC set + to Spack's generic cc, c++, f77, and f90. We want them to + be bound to whatever compiler they were built with. + """ + bin = self.prefix.bin + mpicc = os.path.join(bin, 'mpicc') + mpicxx = os.path.join(bin, 'mpicxx') + mpif77 = os.path.join(bin, 'mpif77') + mpif90 = os.path.join(bin, 'mpif90') + + kwargs = { 'ignore_absent' : True, 'backup' : False, 'string' : True } + filter_file('CC="cc"', 'CC="%s"' % self.compiler.cc, mpicc, **kwargs) + filter_file('CXX="c++"', 'CXX="%s"' % self.compiler.cxx, mpicxx, **kwargs) + filter_file('F77="f77"', 'F77="%s"' % self.compiler.f77, mpif77, **kwargs) + filter_file('FC="f90"', 'FC="%s"' % self.compiler.fc, mpif90, **kwargs) diff --git a/var/spack/packages/netgauge/package.py b/var/spack/packages/netgauge/package.py new file mode 100644 index 0000000000..c2378b0718 --- /dev/null +++ b/var/spack/packages/netgauge/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://scalability-llnl.github.io/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + +class Netgauge(Package): + """Netgauge is a high-precision network parameter measurement + tool. It supports benchmarking of many different network protocols + and communication patterns. The main focus lies on accuracy, + statistical analysis and easy extensibility. + """ + homepage = "http://unixer.de/research/netgauge/" + url = "http://unixer.de/research/netgauge/netgauge-2.4.6.tar.gz" + + version('2.4.6', 'e0e040ec6452e93ca21ccc54deac1d7f') + + depends_on("mpi") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/openmpi/package.py b/var/spack/packages/openmpi/package.py index 0ce09bdd8d..1ef8a8f000 100644 --- a/var/spack/packages/openmpi/package.py +++ b/var/spack/packages/openmpi/package.py @@ -10,22 +10,32 @@ class Openmpi(Package): """ homepage = "http://www.open-mpi.org" - url = "http://www.open-mpi.org/software/ompi/v1.6/downloads/openmpi-1.6.5.tar.bz2" - version('1.6.5', '03aed2a4aa4d0b27196962a2a65fc475') + version('1.8.2', 'ab538ed8e328079d566fc797792e016e', + url='http://www.open-mpi.org/software/ompi/v1.8/downloads/openmpi-1.8.2.tar.gz') - provides('mpi@:2') + version('1.6.5', '03aed2a4aa4d0b27196962a2a65fc475', + url = "http://www.open-mpi.org/software/ompi/v1.6/downloads/openmpi-1.6.5.tar.bz2") + patch('ad_lustre_rwcontig_open_source.patch', when="@1.6.5") + patch('llnl-platforms.patch', when="@1.6.5") - patch('ad_lustre_rwcontig_open_source.patch') - patch('llnl-platforms.patch') + provides('mpi@:2') def install(self, spec, prefix): - configure("--prefix=%s" % prefix, - "--with-platform=contrib/platform/lanl/tlcc2/optimized-nopanasas") + config_args = ["--prefix=%s" % prefix] + + # TODO: use variants for this, e.g. +lanl, +llnl, etc. + # use this for LANL builds, but for LLNL builds, we need: + # "--with-platform=contrib/platform/llnl/optimized" + if self.version == ver("1.6.5"): + confg_args.append("--with-platform=contrib/platform/lanl/tlcc2/optimized-nopanasas") - # TODO: implement variants next, so we can have LLNL and LANL options. - # use above for LANL builds, but for LLNL builds, we need this - # "--with-platform=contrib/platform/llnl/optimized") + # TODO: Spack should make it so that you can't actually find + # these compilers if they're "disabled" for the current + # compiler configuration. + if not self.compiler.f77 and not self.compiler.fc: + config_args.append("--enable-mpi-fortran=no") + configure(*config_args) make() make("install") diff --git a/var/spack/packages/scalasca/package.py b/var/spack/packages/scalasca/package.py index b76d0a7df5..cf7a40c1f5 100644 --- a/var/spack/packages/scalasca/package.py +++ b/var/spack/packages/scalasca/package.py @@ -11,25 +11,47 @@ class Scalasca(Package): # FIXME: add a proper url for your package's homepage here. homepage = "http://www.scalasca.org" - url = "http://apps.fz-juelich.de/scalasca/releases/scalasca/2.1/dist/scalasca-2.1-rc2.tar.gz" + url = "http://apps.fz-juelich.de/scalasca/releases/scalasca/2.1/dist/scalasca-2.1.tar.gz" - version('2.1-rc2', '1a95a39e5430539753e956a7524a756b') + version('2.1', 'bab9c2b021e51e2ba187feec442b96e6', + url = 'http://apps.fz-juelich.de/scalasca/releases/scalasca/2.1/dist/scalasca-2.1.tar.gz' ) depends_on("mpi") depends_on("otf2@1.4") - depends_on("cube") + depends_on("cube@4.2.3") + + backend_user_provided = """\ +CC=cc +CXX=c++ +F77=f77 +FC=f90 +CFLAGS=-fPIC +CXXFLAGS=-fPIC +""" + frontend_user_provided = """\ +CC_FOR_BUILD=cc +CXX_FOR_BUILD=c++ +F77_FOR_BUILD=f70 +FC_FOR_BUILD=f90 +CFLAGS_FOR_BUILD=-fPIC +CXXFLAGS_FOR_BUILD=-fPIC +""" + mpi_user_provided = """\ +MPICC=mpicc +MPICXX=mpicxx +MPIF77=mpif77 +MPIFC=mpif90 +MPI_CFLAGS=-fPIC +MPI_CXXFLAGS=-fPIC +""" def install(self, spec, prefix): configure_args = ["--prefix=%s" % prefix, + "--with-custom-compilers", "--with-otf2=%s" % spec['otf2'].prefix.bin, "--with-cube=%s" % spec['cube'].prefix.bin, "--enable-shared"] - if spec.satisfies('%gcc'): - configure_args.append('--with-nocross-compiler-suite=gcc') - if spec.satisfies('%intel'): - configure_args.append('--with-nocross-compiler-suite=intel') - configure(*configure_args) make() diff --git a/var/spack/packages/scr/package.py b/var/spack/packages/scr/package.py index d480dba62f..d456ecaba0 100644 --- a/var/spack/packages/scr/package.py +++ b/var/spack/packages/scr/package.py @@ -25,6 +25,9 @@ from spack import * class Scr(Package): + """SCR caches checkpoint data in storage on the compute nodes of a + Linux cluster to provide a fast, scalable checkpoint/restart + capability for MPI codes""" homepage = "https://computation-rnd.llnl.gov/scr" url = "http://downloads.sourceforge.net/project/scalablecr/releases/scr-1.1-7.tar.gz" diff --git a/var/spack/packages/spindle/package.py b/var/spack/packages/spindle/package.py index bb0b74ab6f..fd59282ebb 100644 --- a/var/spack/packages/spindle/package.py +++ b/var/spack/packages/spindle/package.py @@ -25,6 +25,11 @@ from spack import * class Spindle(Package): + """Spindle improves the library-loading performance of dynamically + linked HPC applications. Without Spindle large MPI jobs can + overload on a shared file system when loading dynamically + linked libraries, causing site-wide performance problems. + """ homepage = "https://computation-rnd.llnl.gov/spindle" url = "https://github.com/hpc/Spindle/archive/v0.8.1.tar.gz" list_url = "https://github.com/hpc/Spindle/releases" diff --git a/var/spack/packages/stat/package.py b/var/spack/packages/stat/package.py index fbd1418d41..05e74b6a84 100644 --- a/var/spack/packages/stat/package.py +++ b/var/spack/packages/stat/package.py @@ -27,9 +27,5 @@ class Stat(Package): "--with-stackwalker=%s" % spec['dyninst'].prefix, "--with-libdwarf=%s" % spec['libdwarf'].prefix) - # TODO: remove once SPACK-19 is fixed - import shutil - shutil.copy2('/usr/bin/libtool', 'libtool') - make(parallel=False) make("install") diff --git a/var/spack/packages/sundials/package.py b/var/spack/packages/sundials/package.py new file mode 100644 index 0000000000..8b784c8c3c --- /dev/null +++ b/var/spack/packages/sundials/package.py @@ -0,0 +1,39 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://scalability-llnl.github.io/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + +class Sundials(Package): + """SUNDIALS (SUite of Nonlinear and DIfferential/ALgebraic equation Solvers)""" + homepage = "http://computation.llnl.gov/casc/sundials/" + url = "http://computation.llnl.gov/casc/sundials/download/code/sundials-2.5.0.tar.gz" + + version('2.5.0', 'aba8b56eec600de3109cfb967aa3ba0f') + + depends_on("mpi") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") |