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Diffstat (limited to 'var')
17 files changed, 680 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-dendextend/package.py b/var/spack/repos/builtin/packages/r-dendextend/package.py new file mode 100644 index 0000000000..3bde46b6f0 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-dendextend/package.py @@ -0,0 +1,42 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RDendextend(RPackage): + """dendextend: Extending 'Dendrogram' Functionality in R""" + + homepage = "https://CRAN.R-project.org/package=dendextend" + url = "https://cran.r-project.org/src/contrib/dendextend_1.5.2.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/dendextend" + + version('1.5.2', '1134869d94005727c63cf3037e2f1bbf') + + depends_on('r@3.0.0:') + depends_on('r-magrittr@1.0.1:', type=('build', 'run')) + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-fpc', type=('build', 'run')) + depends_on('r-whisker', type=('build', 'run')) + depends_on('r-viridis', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-diptest/package.py b/var/spack/repos/builtin/packages/r-diptest/package.py new file mode 100644 index 0000000000..f9ce2dd794 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-diptest/package.py @@ -0,0 +1,35 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RDiptest(RPackage): + """diptest: Hartigan's Dip Test Statistic for Unimodality - Corrected""" + + homepage = "https://CRAN.R-project.org/package=diptest" + url = "https://cran.r-project.org/src/contrib/diptest_0.75-7.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/diptest" + + version('0.75-7', '1a4a958fda763f7c99cb485dbe5954ab') diff --git a/var/spack/repos/builtin/packages/r-factoextra/package.py b/var/spack/repos/builtin/packages/r-factoextra/package.py new file mode 100644 index 0000000000..44b39e7326 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-factoextra/package.py @@ -0,0 +1,47 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RFactoextra(RPackage): + """factoextra: Extract and Visualize the Results of Multivariate Data + Analyses""" + + homepage = "http://www.sthda.com/english/rpkgs/factoextra" + url = "https://cran.r-project.org/src/contrib/factoextra_1.0.4.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/factoextra" + + version('1.0.4', 'aa4c81ca610f17fdee0c9f3379e35429') + + depends_on('r@3.1.0:') + depends_on('r-ggplot2@2.2.0:', type=('build', 'run')) + depends_on('r-abind', type=('build', 'run')) + # depends_on('r-cluster', type=('build', 'run')) + depends_on('r-dendextend', type=('build', 'run')) + depends_on('r-factominer', type=('build', 'run')) + depends_on('r-ggpubr', type=('build', 'run')) + depends_on('r-reshape2', type=('build', 'run')) + depends_on('r-ggrepel', type=('build', 'run')) + depends_on('r-tidyr', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-factominer/package.py b/var/spack/repos/builtin/packages/r-factominer/package.py new file mode 100644 index 0000000000..909e6871bf --- /dev/null +++ b/var/spack/repos/builtin/packages/r-factominer/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RFactominer(RPackage): + """FactoMineR: Multivariate Exploratory Data Analysis and Data Mining""" + + homepage = "http://factominer.free.fr" + url = "https://cran.r-project.org/src/contrib/FactoMineR_1.35.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/FactoMineR" + + version('1.35', 'bef076181ce942016114dd7a6f5c2348') + + depends_on('r@3.3.0:') + depends_on('r-car', type=('build', 'run')) + # depends_on('r-cluster', type=('build', 'run')) + depends_on('r-ellipse', type=('build', 'run')) + depends_on('r-flashclust', type=('build', 'run')) + # depends_on('r-lattice', type=('build', 'run')) + depends_on('r-leaps', type=('build', 'run')) + # depends_on('r-mass', type=('build', 'run')) + depends_on('r-scatterplot3d', type=('build', 'run')) + depends_on('r-knitr', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-flashclust/package.py b/var/spack/repos/builtin/packages/r-flashclust/package.py new file mode 100644 index 0000000000..e8ea8c76e4 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-flashclust/package.py @@ -0,0 +1,37 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RFlashclust(RPackage): + """flashClust: Implementation of optimal hierarchical clustering""" + + homepage = "https://CRAN.R-project.org/package=flashClust" + url = "https://cran.r-project.org/src/contrib/flashClust_1.01-2.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/flashClust" + + version('1.01-2', '23409aeeef98bf35d0b3d5dd755fdeff') + + depends_on('r@2.3.0:') diff --git a/var/spack/repos/builtin/packages/r-flexmix/package.py b/var/spack/repos/builtin/packages/r-flexmix/package.py new file mode 100644 index 0000000000..ebaed1ebd8 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-flexmix/package.py @@ -0,0 +1,40 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RFlexmix(RPackage): + """flexmix: Flexible Mixture Modeling""" + + homepage = "https://CRAN.R-project.org/package=flexmix" + url = "https://cran.r-project.org/src/contrib/flexmix_2.3-14.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/flexmix" + + version('2.3-14', '5be4f7764e6a697f4586e60c2bf6e960') + + depends_on('r@2.15.0:') + # depends_on('r-lattice', type=('build', 'run')) + depends_on('r-modeltools@0.2-16:', type=('build', 'run')) + # depends_on('r-nnet', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-fpc/package.py b/var/spack/repos/builtin/packages/r-fpc/package.py new file mode 100644 index 0000000000..8a50a984f4 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-fpc/package.py @@ -0,0 +1,48 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RFpc(RPackage): + """fpc: Flexible Procedures for Clustering""" + + homepage = "http://www.homepages.ucl.ac.uk/~ucakche" + url = "https://cran.r-project.org/src/contrib/fpc_2.1-10.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/fpc" + + version('2.1-10', '75e5340e416cd13d7751e06f1c07866b') + + depends_on('r@2.0.0:') + # depends_on('r-mass', type=('build', 'run')) + # depends_on('r-cluster', type=('build', 'run')) + depends_on('r-mclust', type=('build', 'run')) + depends_on('r-flexmix', type=('build', 'run')) + depends_on('r-prabclus', type=('build', 'run')) + # depends_on('r-class', type=('build', 'run')) + depends_on('r-diptest', type=('build', 'run')) + depends_on('r-mvtnorm', type=('build', 'run')) + depends_on('r-robustbase', type=('build', 'run')) + depends_on('r-kernlab', type=('build', 'run')) + depends_on('r-trimcluster', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-ggpubr/package.py b/var/spack/repos/builtin/packages/r-ggpubr/package.py new file mode 100644 index 0000000000..52184b7307 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-ggpubr/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RGgpubr(RPackage): + """ggpubr: 'ggplot2' Based Publication Ready Plots""" + + homepage = "http://www.sthda.com/english/rpkgs/ggpubr" + url = "https://cran.r-project.org/src/contrib/ggpubr_0.1.2.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/ggpubr" + + version('0.1.2', '42a5749ae44121597ef511a7424429d1') + + depends_on('r@3.1.0:') + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-ggrepel', type=('build', 'run')) + depends_on('r-ggsci', type=('build', 'run')) + depends_on('r-plyr', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-ggrepel/package.py b/var/spack/repos/builtin/packages/r-ggrepel/package.py new file mode 100644 index 0000000000..c1547655c0 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-ggrepel/package.py @@ -0,0 +1,40 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RGgrepel(RPackage): + """ggrepel: Repulsive Text and Label Geoms for 'ggplot2'""" + + homepage = "http://github.com/slowkow/ggrepel" + url = "https://cran.r-project.org/src/contrib/ggrepel_0.6.5.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/ggrepel" + + version('0.6.5', '7e2732cd4840efe2dc9e4bc689cf1ee5') + + depends_on('r@3.0.0:') + depends_on('r-ggplot2@2.0.0:', type=('build', 'run')) + depends_on('r-rcpp', type=('build', 'run')) + depends_on('r-scales@0.3.0:', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-ggsci/package.py b/var/spack/repos/builtin/packages/r-ggsci/package.py new file mode 100644 index 0000000000..fb811ff2fe --- /dev/null +++ b/var/spack/repos/builtin/packages/r-ggsci/package.py @@ -0,0 +1,40 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RGgsci(RPackage): + """ggsci: Scientific Journal and Sci-Fi Themed Color Palettes for + 'ggplot2'""" + + homepage = "https://github.com/road2stat/ggsci" + url = "https://cran.r-project.org/src/contrib/ggsci_2.4.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/ggsci" + + version('2.4', '8e5dc2fcf84352cacbb91363e26c7175') + + depends_on('r@3.0.2:') + depends_on('r-scales', type=('build', 'run')) + depends_on('r-ggplot2@2.0.0:', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-leaps/package.py b/var/spack/repos/builtin/packages/r-leaps/package.py new file mode 100644 index 0000000000..077ea282ba --- /dev/null +++ b/var/spack/repos/builtin/packages/r-leaps/package.py @@ -0,0 +1,35 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RLeaps(RPackage): + """leaps: Regression Subset Selection""" + + homepage = "https://CRAN.R-project.org/package=leaps" + url = "https://cran.r-project.org/src/contrib/leaps_3.0.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/leaps" + + version('3.0', '30823138890680e0493d1491c8f43edc') diff --git a/var/spack/repos/builtin/packages/r-mclust/package.py b/var/spack/repos/builtin/packages/r-mclust/package.py new file mode 100644 index 0000000000..5bf58c02cd --- /dev/null +++ b/var/spack/repos/builtin/packages/r-mclust/package.py @@ -0,0 +1,38 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RMclust(RPackage): + """mclust: Gaussian Mixture Modelling for Model-Based Clustering, + Classification, and Density Estimation""" + + homepage = "http://www.stat.washington.edu/mclust" + url = "https://cran.r-project.org/src/contrib/mclust_5.3.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/mclust" + + version('5.3', '74aac9fccdfc78373ce733c1a09176ef') + + depends_on('r@3.0.0:') diff --git a/var/spack/repos/builtin/packages/r-prabclus/package.py b/var/spack/repos/builtin/packages/r-prabclus/package.py new file mode 100644 index 0000000000..424d75274d --- /dev/null +++ b/var/spack/repos/builtin/packages/r-prabclus/package.py @@ -0,0 +1,40 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RPrabclus(RPackage): + """prabclus: Functions for Clustering of Presence-Absence, Abundance and + Multilocus Genetic Data""" + + homepage = "http://www.homepages.ucl.ac.uk/~ucakche" + url = "https://cran.r-project.org/src/contrib/prabclus_2.2-6.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/prabclus" + + version('2.2-6', '7f835dcc113243e1db74aad28ce93d11') + + depends_on('r@2.1.0:') + # depends_on('r-mass', type=('build', 'run')) + depends_on('r-mclust', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-scatterplot3d/package.py b/var/spack/repos/builtin/packages/r-scatterplot3d/package.py new file mode 100644 index 0000000000..edb92a0820 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-scatterplot3d/package.py @@ -0,0 +1,37 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RScatterplot3d(RPackage): + """scatterplot3d: 3D Scatter Plot""" + + homepage = "https://CRAN.R-project.org/package=scatterplot3d" + url = "https://cran.r-project.org/src/contrib/scatterplot3d_0.3-40.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/scatterplot3d" + + version('0.3-40', '67b9ab6131d244d7fc1db39dcc911dfe') + + depends_on('r@2.7.0:') diff --git a/var/spack/repos/builtin/packages/r-trimcluster/package.py b/var/spack/repos/builtin/packages/r-trimcluster/package.py new file mode 100644 index 0000000000..770718ae00 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-trimcluster/package.py @@ -0,0 +1,37 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RTrimcluster(RPackage): + """trimcluster: Cluster analysis with trimming""" + + homepage = "http://www.homepages.ucl.ac.uk/~ucakche" + url = "https://cran.r-project.org/src/contrib/trimcluster_0.1-2.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/trimcluster" + + version('0.1-2', '7617920e224bd18f5b87db38a3116ec2') + + depends_on('r@1.9.0:') diff --git a/var/spack/repos/builtin/packages/r-viridis/package.py b/var/spack/repos/builtin/packages/r-viridis/package.py new file mode 100644 index 0000000000..55f879e90e --- /dev/null +++ b/var/spack/repos/builtin/packages/r-viridis/package.py @@ -0,0 +1,40 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RViridis(RPackage): + """viridis: Default Color Maps from 'matplotlib'""" + + homepage = "https://github.com/sjmgarnier/viridis" + url = "https://cran.r-project.org/src/contrib/viridis_0.4.0.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/viridis" + + version('0.4.0', 'f874384cbedf459f6c309ddb40b354ea') + + depends_on('r@2.1.0:') + depends_on('r-viridislite@0.2.0:', type=('build', 'run')) + depends_on('r-ggplot2@1.0.1:', type=('build', 'run')) + depends_on('r-gridextra', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-viridislite/package.py b/var/spack/repos/builtin/packages/r-viridislite/package.py new file mode 100644 index 0000000000..fc65b7f393 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-viridislite/package.py @@ -0,0 +1,37 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RViridislite(RPackage): + """viridisLite: Default Color Maps from 'matplotlib' (Lite Version)""" + + homepage = "https://github.com/sjmgarnier/viridisLite" + url = "https://cran.r-project.org/src/contrib/viridisLite_0.2.0.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/viridisLite" + + version('0.2.0', '04a04415cf651a2b5f964b261896c0fb') + + depends_on('r@2.1.0:') |