353 files changed, 450 insertions, 258 deletions

diff --git a/var/spack/mock_configs/site_spackconfig/compilers.yaml b/var/spack/mock_configs/site_spackconfig/compilers.yaml
deleted file mode 100644
index 0a2dc893e2..0000000000
--- a/var/spack/mock_configs/site_spackconfig/compilers.yaml
+++ /dev/null
@@ -1,12 +0,0 @@
-compilers:
-  all:
-    clang@3.3:
-      cc: /path/to/clang
-      cxx: /path/to/clang++
-      f77: None
-      fc: None
-    gcc@4.5.0:
-      cc: /path/to/gcc
-      cxx: /path/to/g++
-      f77: /path/to/gfortran
-      fc: /path/to/gfortran
diff --git a/var/spack/packages/R/package.py b/var/spack/packages/R/package.py
deleted file mode 100644
index 2e6f65a742..0000000000
--- a/var/spack/packages/R/package.py
+++ /dev/null
@@ -1,33 +0,0 @@
-from spack import *
-
-class R(Package):
-    """R is 'GNU S', a freely available language and environment for
-       statistical computing and graphics which provides a wide va
-       riety of statistical and graphical techniques: linear and
-       nonlinear modelling, statistical tests, time series analysis,
-       classification, clustering, etc. Please consult the R project
-       homepage for further information."""
-    homepage = "http://www.example.com"
-    url      = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz"
-
-    version('3.1.2', '3af29ec06704cbd08d4ba8d69250ae74')
-
-    depends_on("readline")
-    depends_on("ncurses")
-    depends_on("icu")
-    depends_on("glib")
-    depends_on("zlib")
-    depends_on("libtiff")
-    depends_on("jpeg")
-    depends_on("cairo")
-    depends_on("pango")
-    depends_on("freetype")
-    depends_on("tcl")
-    depends_on("tk")
-
-    def install(self, spec, prefix):
-        configure("--prefix=%s" % prefix,
-                  "--enable-R-shlib",
-                  "--enable-BLAS-shlib")
-        make()
-        make("install")
diff --git a/var/spack/packages/clang/package.py b/var/spack/packages/clang/package.py
deleted file mode 100644
index e46e08d5f1..0000000000
--- a/var/spack/packages/clang/package.py
+++ /dev/null
@@ -1,95 +0,0 @@
-##############################################################################
-# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
-# Produced at the Lawrence Livermore National Laboratory.
-#
-# This file is part of Spack.
-# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
-# LLNL-CODE-647188
-#
-# For details, see https://github.com/llnl/spack
-# Please also see the LICENSE file for our notice and the LGPL.
-#
-# This program is free software; you can redistribute it and/or modify
-# it under the terms of the GNU General Public License (as published by
-# the Free Software Foundation) version 2.1 dated February 1999.
-#
-# This program is distributed in the hope that it will be useful, but
-# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
-# conditions of the GNU General Public License for more details.
-#
-# You should have received a copy of the GNU Lesser General Public License
-# along with this program; if not, write to the Free Software Foundation,
-# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-##############################################################################
-
-
-from spack import *
-
-import os
-import os.path
-
-class Clang(Package):
-    """The goal of the Clang project is to create a new C, C++,
-       Objective C and Objective C++ front-end for the LLVM compiler.
-    """
-    homepage = 'http://clang.llvm.org'
-    url = 'http://llvm.org/releases/3.7.0/cfe-3.7.0.src.tar.xz'
-
-    depends_on('llvm@3.7.0', when='@3.7.0')
-    depends_on('llvm@3.6.2', when='@3.6.2')
-    depends_on('llvm@3.5.1', when='@3.5.1')
-
-    version('3.7.0', '8f9d27335e7331cf0a4711e952f21f01', url='http://llvm.org/releases/3.7.0/cfe-3.7.0.src.tar.xz')
-    version('3.6.2', 'ff862793682f714bb7862325b9c06e20', url='http://llvm.org/releases/3.6.2/cfe-3.6.2.src.tar.xz')
-    version('3.5.1', '93f9532f8f7e6f1d8e5c1116907051cb', url='http://llvm.org/releases/3.5.1/cfe-3.5.1.src.tar.xz')
-
-    ##########
-    # @3.7.0
-    resource(name='clang-tools-extra',
-             url='http://llvm.org/releases/3.7.0/clang-tools-extra-3.7.0.src.tar.xz',
-             md5='d5a87dacb65d981a427a536f6964642e', destination='tools', when='@3.7.0')
-    ##########
-
-    def install(self, spec, prefix):
-        env['CXXFLAGS'] = self.compiler.cxx11_flag
-
-        with working_dir('spack-build', create=True):
-
-            options = []
-            if '@3.7.0:' in spec:
-                options.append('-DCLANG_DEFAULT_OPENMP_RUNTIME:STRING=libomp')
-            options.extend(std_cmake_args)
-
-            cmake('..',
-                  '-DCLANG_PATH_TO_LLVM_BUILD:PATH=%s' % spec['llvm'].prefix,
-                  '-DLLVM_MAIN_SRC_DIR:PATH=%s' % spec['llvm'].prefix,
-                  *options)
-            make()
-            make("install")
-            # CLang doesn't look in llvm folders for system headers...
-            self.link_llvm_directories(spec)
-
-    def link_llvm_directories(self, spec):
-
-        def clang_include_dir_at(root):
-            return join_path(root, 'include')
-
-        def clang_lib_dir_at(root):
-            return join_path(root, 'lib/clang/', str(self.version), 'include')
-
-        def do_link(source_dir, destination_dir):
-            if os.path.exists(source_dir):
-                for name in os.listdir(source_dir):
-                    source = join_path(source_dir, name)
-                    link = join_path(destination_dir, name)
-                    os.symlink(source, link)
-
-        # Link folder and files in include
-        llvm_dir = clang_include_dir_at(spec['llvm'].prefix)
-        clang_dir = clang_include_dir_at(self.prefix)
-        do_link(llvm_dir, clang_dir)
-        # Link folder and files in lib
-        llvm_dir = clang_lib_dir_at(spec['llvm'].prefix)
-        clang_dir = clang_lib_dir_at(self.prefix)
-        do_link(llvm_dir, clang_dir)
\ No newline at end of file
diff --git a/var/spack/packages/llvm/package.py b/var/spack/packages/llvm/package.py
deleted file mode 100644
index a3307584e0..0000000000
--- a/var/spack/packages/llvm/package.py
+++ /dev/null
@@ -1,72 +0,0 @@
-##############################################################################
-# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
-# Produced at the Lawrence Livermore National Laboratory.
-#
-# This file is part of Spack.
-# Written by David Beckingsale, david@llnl.gov, All rights reserved.
-# LLNL-CODE-647188
-#
-# For details, see https://github.com/llnl/spack
-# Please also see the LICENSE file for our notice and the LGPL.
-#
-# This program is free software; you can redistribute it and/or modify
-# it under the terms of the GNU General Public License (as published by
-# the Free Software Foundation) version 2.1 dated February 1999.
-#
-# This program is distributed in the hope that it will be useful, but
-# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
-# conditions of the GNU General Public License for more details.
-#
-# You should have received a copy of the GNU Lesser General Public License
-# along with this program; if not, write to the Free Software Foundation,
-# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-##############################################################################
-from spack import *
-
-
-class Llvm(Package):
-    """The LLVM Project is a collection of modular and reusable compiler and
-       toolchain technologies. Despite its name, LLVM has little to do with
-       traditional virtual machines, though it does provide helpful libraries
-       that can be used to build them. The name "LLVM" itself is not an acronym;
-       it is the full name of the project.
-    """
-    homepage = 'http://llvm.org/'
-    url = 'http://llvm.org/releases/3.7.0/llvm-3.7.0.src.tar.xz'
-
-    version('3.7.0', 'b98b9495e5655a672d6cb83e1a180f8e', url='http://llvm.org/releases/3.7.0/llvm-3.7.0.src.tar.xz')
-    version('3.6.2', '0c1ee3597d75280dee603bae9cbf5cc2', url='http://llvm.org/releases/3.6.2/llvm-3.6.2.src.tar.xz')
-    version('3.5.1', '2d3d8004f38852aa679e5945b8ce0b14', url='http://llvm.org/releases/3.5.1/llvm-3.5.1.src.tar.xz')
-    version('3.0', 'a8e5f5f1c1adebae7b4a654c376a6005', url='http://llvm.org/releases/3.0/llvm-3.0.tar.gz') # currently required by mesa package
-
-    depends_on('python@2.7:')
-
-    variant('libcxx', default=False, description="Builds the LLVM Standard C++ library targeting C++11")
-
-    ##########
-    # @3.7.0
-    resource(name='compiler-rt',
-             url='http://llvm.org/releases/3.7.0/compiler-rt-3.7.0.src.tar.xz', md5='383c10affd513026f08936b5525523f5',
-             destination='projects', when='@3.7.0')
-    resource(name='openmp',
-             url='http://llvm.org/releases/3.7.0/openmp-3.7.0.src.tar.xz', md5='f482c86fdead50ba246a1a2b0bbf206f',
-             destination='projects', when='@3.7.0')
-    resource(name='libcxx',
-             url='http://llvm.org/releases/3.7.0/libcxx-3.7.0.src.tar.xz', md5='46aa5175cbe1ad42d6e9c995968e56dd',
-             destination='projects', placement='libcxx', when='+libcxx@3.7.0')
-    resource(name='libcxxabi',
-             url='http://llvm.org/releases/3.7.0/libcxxabi-3.7.0.src.tar.xz', md5='5aa769e2fca79fa5335cfae8f6258772',
-             destination='projects', placement='libcxxabi', when='+libcxx@3.7.0')
-    ##########
-
-    def install(self, spec, prefix):
-        env['CXXFLAGS'] = self.compiler.cxx11_flag
-
-        with working_dir('spack-build', create=True):
-            cmake('..',
-                  '-DLLVM_REQUIRES_RTTI:BOOL=ON',
-                  '-DPYTHON_EXECUTABLE:PATH=%s/bin/python' % spec['python'].prefix,
-                  *std_cmake_args)
-            make()
-            make("install")
diff --git a/var/spack/mock_packages/a/package.py b/var/spack/repos/builtin.mock/packages/a/package.py
index fa63c08df0..fa63c08df0 100644
--- a/var/spack/mock_packages/a/package.py
+++ b/var/spack/repos/builtin.mock/packages/a/package.py
diff --git a/var/spack/mock_packages/b/package.py b/var/spack/repos/builtin.mock/packages/b/package.py
index cb88aa2157..cb88aa2157 100644
--- a/var/spack/mock_packages/b/package.py
+++ b/var/spack/repos/builtin.mock/packages/b/package.py
diff --git a/var/spack/mock_packages/c/package.py b/var/spack/repos/builtin.mock/packages/c/package.py
index f51b913fa9..f51b913fa9 100644
--- a/var/spack/mock_packages/c/package.py
+++ b/var/spack/repos/builtin.mock/packages/c/package.py
diff --git a/var/spack/mock_packages/callpath/package.py b/var/spack/repos/builtin.mock/packages/callpath/package.py
index abc576f78f..abc576f78f 100644
--- a/var/spack/mock_packages/callpath/package.py
+++ b/var/spack/repos/builtin.mock/packages/callpath/package.py
diff --git a/var/spack/mock_packages/direct_mpich/package.py b/var/spack/repos/builtin.mock/packages/direct_mpich/package.py
index efe7fc2afc..efe7fc2afc 100644
--- a/var/spack/mock_packages/direct_mpich/package.py
+++ b/var/spack/repos/builtin.mock/packages/direct_mpich/package.py
diff --git a/var/spack/mock_packages/dyninst/package.py b/var/spack/repos/builtin.mock/packages/dyninst/package.py
index ea57950865..ea57950865 100644
--- a/var/spack/mock_packages/dyninst/package.py
+++ b/var/spack/repos/builtin.mock/packages/dyninst/package.py
diff --git a/var/spack/mock_packages/e/package.py b/var/spack/repos/builtin.mock/packages/e/package.py
index 76c6b64c7f..76c6b64c7f 100644
--- a/var/spack/mock_packages/e/package.py
+++ b/var/spack/repos/builtin.mock/packages/e/package.py
diff --git a/var/spack/mock_packages/fake/package.py b/var/spack/repos/builtin.mock/packages/fake/package.py
index 5f81ef20fc..5f81ef20fc 100644
--- a/var/spack/mock_packages/fake/package.py
+++ b/var/spack/repos/builtin.mock/packages/fake/package.py
diff --git a/var/spack/mock_packages/git-test/package.py b/var/spack/repos/builtin.mock/packages/git-test/package.py
index 689185463c..689185463c 100644
--- a/var/spack/mock_packages/git-test/package.py
+++ b/var/spack/repos/builtin.mock/packages/git-test/package.py
diff --git a/var/spack/mock_packages/hg-test/package.py b/var/spack/repos/builtin.mock/packages/hg-test/package.py
index 462f1e4c3a..462f1e4c3a 100644
--- a/var/spack/mock_packages/hg-test/package.py
+++ b/var/spack/repos/builtin.mock/packages/hg-test/package.py
diff --git a/var/spack/mock_packages/indirect_mpich/package.py b/var/spack/repos/builtin.mock/packages/indirect_mpich/package.py
index 0b1773a27b..0b1773a27b 100644
--- a/var/spack/mock_packages/indirect_mpich/package.py
+++ b/var/spack/repos/builtin.mock/packages/indirect_mpich/package.py
diff --git a/var/spack/mock_packages/libdwarf/package.py b/var/spack/repos/builtin.mock/packages/libdwarf/package.py
index e486a5de03..e486a5de03 100644
--- a/var/spack/mock_packages/libdwarf/package.py
+++ b/var/spack/repos/builtin.mock/packages/libdwarf/package.py
diff --git a/var/spack/mock_packages/libelf/package.py b/var/spack/repos/builtin.mock/packages/libelf/package.py
index 5e5b0b7143..5e5b0b7143 100644
--- a/var/spack/mock_packages/libelf/package.py
+++ b/var/spack/repos/builtin.mock/packages/libelf/package.py
diff --git a/var/spack/mock_packages/mpich/package.py b/var/spack/repos/builtin.mock/packages/mpich/package.py
index 55bf97f2cf..55bf97f2cf 100644
--- a/var/spack/mock_packages/mpich/package.py
+++ b/var/spack/repos/builtin.mock/packages/mpich/package.py
diff --git a/var/spack/mock_packages/mpich2/package.py b/var/spack/repos/builtin.mock/packages/mpich2/package.py
index 90f969b898..90f969b898 100644
--- a/var/spack/mock_packages/mpich2/package.py
+++ b/var/spack/repos/builtin.mock/packages/mpich2/package.py
diff --git a/var/spack/mock_packages/mpileaks/package.py b/var/spack/repos/builtin.mock/packages/mpileaks/package.py
index 9a18c5e1f2..9a18c5e1f2 100644
--- a/var/spack/mock_packages/mpileaks/package.py
+++ b/var/spack/repos/builtin.mock/packages/mpileaks/package.py
diff --git a/var/spack/mock_packages/multimethod/package.py b/var/spack/repos/builtin.mock/packages/multimethod/package.py
index ea103fe175..ea103fe175 100644
--- a/var/spack/mock_packages/multimethod/package.py
+++ b/var/spack/repos/builtin.mock/packages/multimethod/package.py
diff --git a/var/spack/mock_packages/netlib-blas/package.py b/var/spack/repos/builtin.mock/packages/netlib-blas/package.py
index 39f2c92ae5..39f2c92ae5 100644
--- a/var/spack/mock_packages/netlib-blas/package.py
+++ b/var/spack/repos/builtin.mock/packages/netlib-blas/package.py
diff --git a/var/spack/mock_packages/netlib-lapack/package.py b/var/spack/repos/builtin.mock/packages/netlib-lapack/package.py
index 331844e544..331844e544 100644
--- a/var/spack/mock_packages/netlib-lapack/package.py
+++ b/var/spack/repos/builtin.mock/packages/netlib-lapack/package.py
diff --git a/var/spack/mock_packages/openblas/package.py b/var/spack/repos/builtin.mock/packages/openblas/package.py
index c7771b92a3..c7771b92a3 100644
--- a/var/spack/mock_packages/openblas/package.py
+++ b/var/spack/repos/builtin.mock/packages/openblas/package.py
diff --git a/var/spack/mock_packages/optional-dep-test-2/package.py b/var/spack/repos/builtin.mock/packages/optional-dep-test-2/package.py
index ef0587588e..ef0587588e 100644
--- a/var/spack/mock_packages/optional-dep-test-2/package.py
+++ b/var/spack/repos/builtin.mock/packages/optional-dep-test-2/package.py
diff --git a/var/spack/mock_packages/optional-dep-test-3/package.py b/var/spack/repos/builtin.mock/packages/optional-dep-test-3/package.py
index e6cb3bd6e7..e6cb3bd6e7 100644
--- a/var/spack/mock_packages/optional-dep-test-3/package.py
+++ b/var/spack/repos/builtin.mock/packages/optional-dep-test-3/package.py
diff --git a/var/spack/mock_packages/optional-dep-test/package.py b/var/spack/repos/builtin.mock/packages/optional-dep-test/package.py
index bb57576ca9..bb57576ca9 100644
--- a/var/spack/mock_packages/optional-dep-test/package.py
+++ b/var/spack/repos/builtin.mock/packages/optional-dep-test/package.py
diff --git a/var/spack/mock_packages/svn-test/package.py b/var/spack/repos/builtin.mock/packages/svn-test/package.py
index ba4d5522b4..ba4d5522b4 100644
--- a/var/spack/mock_packages/svn-test/package.py
+++ b/var/spack/repos/builtin.mock/packages/svn-test/package.py
diff --git a/var/spack/mock_packages/trivial_install_test_package/package.py b/var/spack/repos/builtin.mock/packages/trivial_install_test_package/package.py
index fec5849e67..fec5849e67 100644
--- a/var/spack/mock_packages/trivial_install_test_package/package.py
+++ b/var/spack/repos/builtin.mock/packages/trivial_install_test_package/package.py
diff --git a/var/spack/mock_packages/zmpi/package.py b/var/spack/repos/builtin.mock/packages/zmpi/package.py
index 201fac2fbf..201fac2fbf 100644
--- a/var/spack/mock_packages/zmpi/package.py
+++ b/var/spack/repos/builtin.mock/packages/zmpi/package.py
diff --git a/var/spack/repos/builtin.mock/repo.yaml b/var/spack/repos/builtin.mock/repo.yaml
new file mode 100644
index 0000000000..30b068da13
--- /dev/null
+++ b/var/spack/repos/builtin.mock/repo.yaml
@@ -0,0 +1,2 @@
+repo:
+  namespace: builtin.mock
diff --git a/var/spack/packages/ImageMagick/package.py b/var/spack/repos/builtin/packages/ImageMagick/package.py
index 753ea80ca6..753ea80ca6 100644
--- a/var/spack/packages/ImageMagick/package.py
+++ b/var/spack/repos/builtin/packages/ImageMagick/package.py
diff --git a/var/spack/packages/Mitos/package.py b/var/spack/repos/builtin/packages/Mitos/package.py
index ea131872dd..ea131872dd 100644
--- a/var/spack/packages/Mitos/package.py
+++ b/var/spack/repos/builtin/packages/Mitos/package.py
diff --git a/var/spack/repos/builtin/packages/R/package.py b/var/spack/repos/builtin/packages/R/package.py
new file mode 100644
index 0000000000..2471dff09b
--- /dev/null
+++ b/var/spack/repos/builtin/packages/R/package.py
@@ -0,0 +1,49 @@
+from spack import *
+
+
+class R(Package):
+    """
+    R is 'GNU S', a freely available language and environment for statistical computing and graphics which provides a
+    wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series
+    analysis, classification, clustering, etc. Please consult the R project homepage for further information.
+    """
+    homepage = "https://www.r-project.org"
+    url = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz"
+
+    version('3.2.3', '1ba3dac113efab69e706902810cc2970')
+    version('3.2.2', '57cef5c2e210a5454da1979562a10e5b')
+    version('3.2.1', 'c2aac8b40f84e08e7f8c9068de9239a3')
+    version('3.2.0', '66fa17ad457d7e618191aa0f52fc402e')
+    version('3.1.3', '53a85b884925aa6b5811dfc361d73fc4')
+    version('3.1.2', '3af29ec06704cbd08d4ba8d69250ae74')
+
+    variant('external-lapack', default=False, description='Links to externally installed BLAS/LAPACK')
+
+    # Virtual dependencies
+    depends_on('blas', when='+external-lapack')
+    depends_on('lapack', when='+external-lapack')
+
+    # Concrete dependencies
+    depends_on('readline')
+    depends_on('ncurses')
+    depends_on('icu')
+    depends_on('glib')
+    depends_on('zlib')
+    depends_on('libtiff')
+    depends_on('jpeg')
+    depends_on('cairo')
+    depends_on('pango')
+    depends_on('freetype')
+    depends_on('tcl')
+    depends_on('tk')
+
+    def install(self, spec, prefix):
+        options = ['--prefix=%s' % prefix,
+                   '--enable-R-shlib',
+                   '--enable-BLAS-shlib']
+        if '+external-lapack' in spec:
+            options.extend(['--with-blas', '--with-lapack'])
+
+        configure(*options)
+        make()
+        make('install')
diff --git a/var/spack/packages/SAMRAI/no-tool-build.patch b/var/spack/repos/builtin/packages/SAMRAI/no-tool-build.patch
index 1adf0cf721..1adf0cf721 100644
--- a/var/spack/packages/SAMRAI/no-tool-build.patch
+++ b/var/spack/repos/builtin/packages/SAMRAI/no-tool-build.patch
diff --git a/var/spack/packages/SAMRAI/package.py b/var/spack/repos/builtin/packages/SAMRAI/package.py
index 2c3b9180af..2c3b9180af 100644
--- a/var/spack/packages/SAMRAI/package.py
+++ b/var/spack/repos/builtin/packages/SAMRAI/package.py
diff --git a/var/spack/packages/activeharmony/package.py b/var/spack/repos/builtin/packages/activeharmony/package.py
index 45dcc7c0e8..45dcc7c0e8 100644
--- a/var/spack/packages/activeharmony/package.py
+++ b/var/spack/repos/builtin/packages/activeharmony/package.py
diff --git a/var/spack/packages/adept-utils/package.py b/var/spack/repos/builtin/packages/adept-utils/package.py
index fb59576c21..fb59576c21 100644
--- a/var/spack/packages/adept-utils/package.py
+++ b/var/spack/repos/builtin/packages/adept-utils/package.py
diff --git a/var/spack/packages/apex/package.py b/var/spack/repos/builtin/packages/apex/package.py
index 8769d97056..8769d97056 100644
--- a/var/spack/packages/apex/package.py
+++ b/var/spack/repos/builtin/packages/apex/package.py
diff --git a/var/spack/packages/arpack/package.py b/var/spack/repos/builtin/packages/arpack/package.py
index 8c67c536f3..8c67c536f3 100644
--- a/var/spack/packages/arpack/package.py
+++ b/var/spack/repos/builtin/packages/arpack/package.py
diff --git a/var/spack/packages/asciidoc/package.py b/var/spack/repos/builtin/packages/asciidoc/package.py
index 828f3b3f4f..828f3b3f4f 100644
--- a/var/spack/packages/asciidoc/package.py
+++ b/var/spack/repos/builtin/packages/asciidoc/package.py
diff --git a/var/spack/packages/atk/package.py b/var/spack/repos/builtin/packages/atk/package.py
index 769805b227..769805b227 100644
--- a/var/spack/packages/atk/package.py
+++ b/var/spack/repos/builtin/packages/atk/package.py
diff --git a/var/spack/packages/atlas/package.py b/var/spack/repos/builtin/packages/atlas/package.py
index fc683363a7..fc683363a7 100644
--- a/var/spack/packages/atlas/package.py
+++ b/var/spack/repos/builtin/packages/atlas/package.py
diff --git a/var/spack/packages/atop/package.py b/var/spack/repos/builtin/packages/atop/package.py
index 346ab0763c..346ab0763c 100644
--- a/var/spack/packages/atop/package.py
+++ b/var/spack/repos/builtin/packages/atop/package.py
diff --git a/var/spack/packages/autoconf/package.py b/var/spack/repos/builtin/packages/autoconf/package.py
index 5189faf054..5189faf054 100644
--- a/var/spack/packages/autoconf/package.py
+++ b/var/spack/repos/builtin/packages/autoconf/package.py
diff --git a/var/spack/packages/automaded/package.py b/var/spack/repos/builtin/packages/automaded/package.py
index e0bc7efb8b..e0bc7efb8b 100644
--- a/var/spack/packages/automaded/package.py
+++ b/var/spack/repos/builtin/packages/automaded/package.py
diff --git a/var/spack/packages/automake/package.py b/var/spack/repos/builtin/packages/automake/package.py
index 9115822730..9115822730 100644
--- a/var/spack/packages/automake/package.py
+++ b/var/spack/repos/builtin/packages/automake/package.py
diff --git a/var/spack/packages/bear/package.py b/var/spack/repos/builtin/packages/bear/package.py
index 0d4436fccc..0d4436fccc 100644
--- a/var/spack/packages/bear/package.py
+++ b/var/spack/repos/builtin/packages/bear/package.py
diff --git a/var/spack/packages/bib2xhtml/package.py b/var/spack/repos/builtin/packages/bib2xhtml/package.py
index 7f8e0cfe5a..7f8e0cfe5a 100644
--- a/var/spack/packages/bib2xhtml/package.py
+++ b/var/spack/repos/builtin/packages/bib2xhtml/package.py
diff --git a/var/spack/packages/binutils/binutilskrell-2.24.patch b/var/spack/repos/builtin/packages/binutils/binutilskrell-2.24.patch
index f48291a6c9..f48291a6c9 100644
--- a/var/spack/packages/binutils/binutilskrell-2.24.patch
+++ b/var/spack/repos/builtin/packages/binutils/binutilskrell-2.24.patch
diff --git a/var/spack/repos/builtin/packages/binutils/cr16.patch b/var/spack/repos/builtin/packages/binutils/cr16.patch
new file mode 100644
index 0000000000..2727c70b23
--- /dev/null
+++ b/var/spack/repos/builtin/packages/binutils/cr16.patch
@@ -0,0 +1,26 @@
+--- old/opcodes/cr16-dis.c	2014-10-14 03:32:04.000000000 -0400
++++ new/opcodes/cr16-dis.c	2016-01-14 21:54:26.000000000 -0500
+@@ -78,7 +78,7 @@
+ REG_ARG_TYPE;
+ 
+ /* Current opcode table entry we're disassembling.  */
+-const inst *instruction;
++extern const inst *instruction;
+ /* Current instruction we're disassembling.  */
+ ins cr16_currInsn;
+ /* The current instruction is read into 3 consecutive words.  */
+@@ -86,12 +86,12 @@
+ /* Contains all words in appropriate order.  */
+ ULONGLONG cr16_allWords;
+ /* Holds the current processed argument number.  */
+-int processing_argument_number;
++extern int processing_argument_number;
+ /* Nonzero means a IMM4 instruction.  */
+ int imm4flag;
+ /* Nonzero means the instruction's original size is
+    incremented (escape sequence is used).  */
+-int size_changed;
++extern int size_changed;
+ 
+ 
+ /* Print the constant expression length.  */
diff --git a/var/spack/packages/binutils/package.py b/var/spack/repos/builtin/packages/binutils/package.py
index 123f4598f6..de04221e33 100644
--- a/var/spack/packages/binutils/package.py
+++ b/var/spack/repos/builtin/packages/binutils/package.py
@@ -11,8 +11,11 @@ class Binutils(Package):
 
     # Add a patch that creates binutils libiberty_pic.a which is preferred by OpenSpeedShop and cbtf-krell
     variant('krellpatch', default=False, description="build with openspeedshop based patch.")
+    variant('gold', default=True, description="build the gold linker")
     patch('binutilskrell-2.24.patch', when='@2.24+krellpatch')
 
+    patch('cr16.patch')
+
     variant('libiberty', default=False, description='Also install libiberty.')
 
     def install(self, spec, prefix):
@@ -26,6 +29,9 @@ class Binutils(Package):
             '--enable-targets=all',
             '--with-sysroot=/']
 
+        if '+gold' in spec:
+            configure_args.append('--enable-gold')
+
         if '+libiberty' in spec:
             configure_args.append('--enable-install-libiberty')
 
diff --git a/var/spack/packages/bison/package.py b/var/spack/repos/builtin/packages/bison/package.py
index 7c526fb958..7c526fb958 100644
--- a/var/spack/packages/bison/package.py
+++ b/var/spack/repos/builtin/packages/bison/package.py
diff --git a/var/spack/packages/boost/package.py b/var/spack/repos/builtin/packages/boost/package.py
index 3427b74ad6..3427b74ad6 100644
--- a/var/spack/packages/boost/package.py
+++ b/var/spack/repos/builtin/packages/boost/package.py
diff --git a/var/spack/packages/bowtie2/bowtie2-2.5.patch b/var/spack/repos/builtin/packages/bowtie2/bowtie2-2.5.patch
index 290be39c73..290be39c73 100644
--- a/var/spack/packages/bowtie2/bowtie2-2.5.patch
+++ b/var/spack/repos/builtin/packages/bowtie2/bowtie2-2.5.patch
diff --git a/var/spack/packages/bowtie2/package.py b/var/spack/repos/builtin/packages/bowtie2/package.py
index 339aab6598..339aab6598 100644
--- a/var/spack/packages/bowtie2/package.py
+++ b/var/spack/repos/builtin/packages/bowtie2/package.py
diff --git a/var/spack/packages/boxlib/package.py b/var/spack/repos/builtin/packages/boxlib/package.py
index 4f1b71132f..4f1b71132f 100644
--- a/var/spack/packages/boxlib/package.py
+++ b/var/spack/repos/builtin/packages/boxlib/package.py
diff --git a/var/spack/packages/bzip2/package.py b/var/spack/repos/builtin/packages/bzip2/package.py
index 638ba1fa4d..638ba1fa4d 100644
--- a/var/spack/packages/bzip2/package.py
+++ b/var/spack/repos/builtin/packages/bzip2/package.py
diff --git a/var/spack/packages/cairo/package.py b/var/spack/repos/builtin/packages/cairo/package.py
index e1ac8aaa7d..8255e869be 100644
--- a/var/spack/packages/cairo/package.py
+++ b/var/spack/repos/builtin/packages/cairo/package.py
@@ -14,6 +14,7 @@ class Cairo(Package):
 
     def install(self, spec, prefix):
         configure("--prefix=%s" % prefix,
+                  "--disable-trace", # can cause problems with libiberty
                   "--enable-tee")
         make()
         make("install")
diff --git a/var/spack/packages/callpath/package.py b/var/spack/repos/builtin/packages/callpath/package.py
index 3d2d96249e..3d2d96249e 100644
--- a/var/spack/packages/callpath/package.py
+++ b/var/spack/repos/builtin/packages/callpath/package.py
diff --git a/var/spack/packages/cblas/package.py b/var/spack/repos/builtin/packages/cblas/package.py
index 3cfe5ee588..3cfe5ee588 100644
--- a/var/spack/packages/cblas/package.py
+++ b/var/spack/repos/builtin/packages/cblas/package.py
diff --git a/var/spack/packages/cbtf-argonavis/package.py b/var/spack/repos/builtin/packages/cbtf-argonavis/package.py
index 7b07933911..7b07933911 100644
--- a/var/spack/packages/cbtf-argonavis/package.py
+++ b/var/spack/repos/builtin/packages/cbtf-argonavis/package.py
diff --git a/var/spack/packages/cbtf-krell/package.py b/var/spack/repos/builtin/packages/cbtf-krell/package.py
index 9458ac113c..9458ac113c 100644
--- a/var/spack/packages/cbtf-krell/package.py
+++ b/var/spack/repos/builtin/packages/cbtf-krell/package.py
diff --git a/var/spack/packages/cbtf-lanl/package.py b/var/spack/repos/builtin/packages/cbtf-lanl/package.py
index 2da9e8a1f7..2da9e8a1f7 100644
--- a/var/spack/packages/cbtf-lanl/package.py
+++ b/var/spack/repos/builtin/packages/cbtf-lanl/package.py
diff --git a/var/spack/packages/cbtf/package.py b/var/spack/repos/builtin/packages/cbtf/package.py
index 52e6a07020..52e6a07020 100644
--- a/var/spack/packages/cbtf/package.py
+++ b/var/spack/repos/builtin/packages/cbtf/package.py
diff --git a/var/spack/packages/cereal/Werror.patch b/var/spack/repos/builtin/packages/cereal/Werror.patch
index d39eaaffdb..d39eaaffdb 100644
--- a/var/spack/packages/cereal/Werror.patch
+++ b/var/spack/repos/builtin/packages/cereal/Werror.patch
diff --git a/var/spack/packages/cereal/package.py b/var/spack/repos/builtin/packages/cereal/package.py
index a83927456f..a83927456f 100644
--- a/var/spack/packages/cereal/package.py
+++ b/var/spack/repos/builtin/packages/cereal/package.py
diff --git a/var/spack/packages/cfitsio/package.py b/var/spack/repos/builtin/packages/cfitsio/package.py
index ff450cb5f3..ff450cb5f3 100644
--- a/var/spack/packages/cfitsio/package.py
+++ b/var/spack/repos/builtin/packages/cfitsio/package.py
diff --git a/var/spack/packages/cgal/package.py b/var/spack/repos/builtin/packages/cgal/package.py
index 97356433be..97356433be 100644
--- a/var/spack/packages/cgal/package.py
+++ b/var/spack/repos/builtin/packages/cgal/package.py
diff --git a/var/spack/packages/cgm/package.py b/var/spack/repos/builtin/packages/cgm/package.py
index 05d6395c5a..05d6395c5a 100644
--- a/var/spack/packages/cgm/package.py
+++ b/var/spack/repos/builtin/packages/cgm/package.py
diff --git a/var/spack/packages/cityhash/package.py b/var/spack/repos/builtin/packages/cityhash/package.py
index 1643cc3b42..1643cc3b42 100644
--- a/var/spack/packages/cityhash/package.py
+++ b/var/spack/repos/builtin/packages/cityhash/package.py
diff --git a/var/spack/packages/cleverleaf/package.py b/var/spack/repos/builtin/packages/cleverleaf/package.py
index fb400b25c3..fb400b25c3 100644
--- a/var/spack/packages/cleverleaf/package.py
+++ b/var/spack/repos/builtin/packages/cleverleaf/package.py
diff --git a/var/spack/packages/cloog/package.py b/var/spack/repos/builtin/packages/cloog/package.py
index 814a33c76c..814a33c76c 100644
--- a/var/spack/packages/cloog/package.py
+++ b/var/spack/repos/builtin/packages/cloog/package.py
diff --git a/var/spack/packages/cmake/package.py b/var/spack/repos/builtin/packages/cmake/package.py
index 173f72742c..f67ae21ebd 100644
--- a/var/spack/packages/cmake/package.py
+++ b/var/spack/repos/builtin/packages/cmake/package.py
@@ -31,12 +31,12 @@ class Cmake(Package):
 
     version('2.8.10.2', '097278785da7182ec0aea8769d06860c',
             url = 'http://www.cmake.org/files/v2.8/cmake-2.8.10.2.tar.gz')
- 
+
     version('3.0.2', 'db4c687a31444a929d2fdc36c4dfb95f',
             url = 'http://www.cmake.org/files/v3.0/cmake-3.0.2.tar.gz')
- 
+
     version('3.4.0', 'cd3034e0a44256a0917e254167217fc8',
-            url = 'https://cmake.org/files/v3.4/cmake-3.4.0.tar.gz')
+            url = 'http://cmake.org/files/v3.4/cmake-3.4.0.tar.gz')
 
     variant('ncurses', default=True, description='Enables the build of the ncurses gui')
 
diff --git a/var/spack/packages/coreutils/package.py b/var/spack/repos/builtin/packages/coreutils/package.py
index 78c608d8eb..78c608d8eb 100644
--- a/var/spack/packages/coreutils/package.py
+++ b/var/spack/repos/builtin/packages/coreutils/package.py
diff --git a/var/spack/packages/cppcheck/package.py b/var/spack/repos/builtin/packages/cppcheck/package.py
index 8e98f457ee..8e98f457ee 100644
--- a/var/spack/packages/cppcheck/package.py
+++ b/var/spack/repos/builtin/packages/cppcheck/package.py
diff --git a/var/spack/packages/cram/package.py b/var/spack/repos/builtin/packages/cram/package.py
index b19422b8a8..b19422b8a8 100644
--- a/var/spack/packages/cram/package.py
+++ b/var/spack/repos/builtin/packages/cram/package.py
diff --git a/var/spack/packages/cscope/package.py b/var/spack/repos/builtin/packages/cscope/package.py
index 9aac0f7304..9aac0f7304 100644
--- a/var/spack/packages/cscope/package.py
+++ b/var/spack/repos/builtin/packages/cscope/package.py
diff --git a/var/spack/packages/cube/package.py b/var/spack/repos/builtin/packages/cube/package.py
index 17d388c33d..17d388c33d 100644
--- a/var/spack/packages/cube/package.py
+++ b/var/spack/repos/builtin/packages/cube/package.py
diff --git a/var/spack/packages/curl/package.py b/var/spack/repos/builtin/packages/curl/package.py
index 9e684445c7..9e684445c7 100644
--- a/var/spack/packages/curl/package.py
+++ b/var/spack/repos/builtin/packages/curl/package.py
diff --git a/var/spack/packages/czmq/package.py b/var/spack/repos/builtin/packages/czmq/package.py
index 0665332179..0665332179 100644
--- a/var/spack/packages/czmq/package.py
+++ b/var/spack/repos/builtin/packages/czmq/package.py
diff --git a/var/spack/packages/damselfly/package.py b/var/spack/repos/builtin/packages/damselfly/package.py
index 96666d1abe..96666d1abe 100644
--- a/var/spack/packages/damselfly/package.py
+++ b/var/spack/repos/builtin/packages/damselfly/package.py
diff --git a/var/spack/packages/dbus/package.py b/var/spack/repos/builtin/packages/dbus/package.py
index 294b0de54e..294b0de54e 100644
--- a/var/spack/packages/dbus/package.py
+++ b/var/spack/repos/builtin/packages/dbus/package.py
diff --git a/var/spack/packages/docbook-xml/package.py b/var/spack/repos/builtin/packages/docbook-xml/package.py
index fce1de7deb..fce1de7deb 100644
--- a/var/spack/packages/docbook-xml/package.py
+++ b/var/spack/repos/builtin/packages/docbook-xml/package.py
diff --git a/var/spack/packages/doxygen/package.py b/var/spack/repos/builtin/packages/doxygen/package.py
index 3d4a4e47a7..3d4a4e47a7 100644
--- a/var/spack/packages/doxygen/package.py
+++ b/var/spack/repos/builtin/packages/doxygen/package.py
diff --git a/var/spack/packages/dri2proto/package.py b/var/spack/repos/builtin/packages/dri2proto/package.py
index 11dfa568e2..11dfa568e2 100644
--- a/var/spack/packages/dri2proto/package.py
+++ b/var/spack/repos/builtin/packages/dri2proto/package.py
diff --git a/var/spack/packages/dtcmp/package.py b/var/spack/repos/builtin/packages/dtcmp/package.py
index 9d940583c1..9d940583c1 100644
--- a/var/spack/packages/dtcmp/package.py
+++ b/var/spack/repos/builtin/packages/dtcmp/package.py
diff --git a/var/spack/packages/dyninst/package.py b/var/spack/repos/builtin/packages/dyninst/package.py
index 0111dcbe08..0111dcbe08 100644
--- a/var/spack/packages/dyninst/package.py
+++ b/var/spack/repos/builtin/packages/dyninst/package.py
diff --git a/var/spack/packages/elfutils/package.py b/var/spack/repos/builtin/packages/elfutils/package.py
index 926d234584..926d234584 100644
--- a/var/spack/packages/elfutils/package.py
+++ b/var/spack/repos/builtin/packages/elfutils/package.py
diff --git a/var/spack/packages/expat/package.py b/var/spack/repos/builtin/packages/expat/package.py
index 082da5bf0b..082da5bf0b 100644
--- a/var/spack/packages/expat/package.py
+++ b/var/spack/repos/builtin/packages/expat/package.py
diff --git a/var/spack/packages/extrae/package.py b/var/spack/repos/builtin/packages/extrae/package.py
index 3ad4cbaf86..3ad4cbaf86 100644
--- a/var/spack/packages/extrae/package.py
+++ b/var/spack/repos/builtin/packages/extrae/package.py
diff --git a/var/spack/packages/exuberant-ctags/package.py b/var/spack/repos/builtin/packages/exuberant-ctags/package.py
index efd2b541b2..efd2b541b2 100644
--- a/var/spack/packages/exuberant-ctags/package.py
+++ b/var/spack/repos/builtin/packages/exuberant-ctags/package.py
diff --git a/var/spack/packages/fftw/package.py b/var/spack/repos/builtin/packages/fftw/package.py
index 4d2b964242..4d2b964242 100644
--- a/var/spack/packages/fftw/package.py
+++ b/var/spack/repos/builtin/packages/fftw/package.py
diff --git a/var/spack/packages/fish/package.py b/var/spack/repos/builtin/packages/fish/package.py
index 1225558705..1225558705 100644
--- a/var/spack/packages/fish/package.py
+++ b/var/spack/repos/builtin/packages/fish/package.py
diff --git a/var/spack/packages/flex/package.py b/var/spack/repos/builtin/packages/flex/package.py
index b065904912..b065904912 100644
--- a/var/spack/packages/flex/package.py
+++ b/var/spack/repos/builtin/packages/flex/package.py
diff --git a/var/spack/packages/fltk/font.patch b/var/spack/repos/builtin/packages/fltk/font.patch
index 7706a1b4ee..7706a1b4ee 100644
--- a/var/spack/packages/fltk/font.patch
+++ b/var/spack/repos/builtin/packages/fltk/font.patch
diff --git a/var/spack/packages/fltk/package.py b/var/spack/repos/builtin/packages/fltk/package.py
index 0b462f83f8..0b462f83f8 100644
--- a/var/spack/packages/fltk/package.py
+++ b/var/spack/repos/builtin/packages/fltk/package.py
diff --git a/var/spack/packages/flux/package.py b/var/spack/repos/builtin/packages/flux/package.py
index dc4e0594c5..dc4e0594c5 100644
--- a/var/spack/packages/flux/package.py
+++ b/var/spack/repos/builtin/packages/flux/package.py
diff --git a/var/spack/packages/fontconfig/package.py b/var/spack/repos/builtin/packages/fontconfig/package.py
index 517c9d1813..517c9d1813 100644
--- a/var/spack/packages/fontconfig/package.py
+++ b/var/spack/repos/builtin/packages/fontconfig/package.py
diff --git a/var/spack/packages/freetype/package.py b/var/spack/repos/builtin/packages/freetype/package.py
index 0309b858a1..0309b858a1 100644
--- a/var/spack/packages/freetype/package.py
+++ b/var/spack/repos/builtin/packages/freetype/package.py
diff --git a/var/spack/packages/gasnet/package.py b/var/spack/repos/builtin/packages/gasnet/package.py
index 705961d1de..705961d1de 100644
--- a/var/spack/packages/gasnet/package.py
+++ b/var/spack/repos/builtin/packages/gasnet/package.py
diff --git a/var/spack/packages/gcc/package.py b/var/spack/repos/builtin/packages/gcc/package.py
index 7ec160d595..61b16f3fd8 100644
--- a/var/spack/packages/gcc/package.py
+++ b/var/spack/repos/builtin/packages/gcc/package.py
@@ -48,11 +48,14 @@ class Gcc(Package):
     version('4.7.4', '4c696da46297de6ae77a82797d2abe28')
     version('4.6.4', 'b407a3d1480c11667f293bfb1f17d1a4')
     version('4.5.4', '27e459c2566b8209ab064570e1b378f7')
+
+    variant('gold', default=True, description="Build the gold linker plugin for ld-based LTO")
     
     depends_on("mpfr")
     depends_on("gmp")
     depends_on("mpc")     # when @4.5:
-    depends_on("binutils~libiberty")
+    depends_on("binutils~libiberty", when='~gold')
+    depends_on("binutils~libiberty+gold", when='+gold')
 
     # Save these until we can do optional deps.
     depends_on("isl", when=DEPENDS_ON_ISL_PREDICATE)
diff --git a/var/spack/packages/gdb/package.py b/var/spack/repos/builtin/packages/gdb/package.py
index 85ed3215e2..dd02b426b9 100644
--- a/var/spack/packages/gdb/package.py
+++ b/var/spack/repos/builtin/packages/gdb/package.py
@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://llnl.github.io/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
diff --git a/var/spack/packages/gdk-pixbuf/package.py b/var/spack/repos/builtin/packages/gdk-pixbuf/package.py
index 14a5569984..14a5569984 100644
--- a/var/spack/packages/gdk-pixbuf/package.py
+++ b/var/spack/repos/builtin/packages/gdk-pixbuf/package.py
diff --git a/var/spack/packages/geos/package.py b/var/spack/repos/builtin/packages/geos/package.py
index 4a2657e32f..4a2657e32f 100644
--- a/var/spack/packages/geos/package.py
+++ b/var/spack/repos/builtin/packages/geos/package.py
diff --git a/var/spack/packages/gflags/package.py b/var/spack/repos/builtin/packages/gflags/package.py
index 62dd80a094..62dd80a094 100644
--- a/var/spack/packages/gflags/package.py
+++ b/var/spack/repos/builtin/packages/gflags/package.py
diff --git a/var/spack/packages/ghostscript/package.py b/var/spack/repos/builtin/packages/ghostscript/package.py
index 0ab49d425f..0ab49d425f 100644
--- a/var/spack/packages/ghostscript/package.py
+++ b/var/spack/repos/builtin/packages/ghostscript/package.py
diff --git a/var/spack/packages/git/package.py b/var/spack/repos/builtin/packages/git/package.py
index ddc5078c4d..ddc5078c4d 100644
--- a/var/spack/packages/git/package.py
+++ b/var/spack/repos/builtin/packages/git/package.py
diff --git a/var/spack/packages/glib/package.py b/var/spack/repos/builtin/packages/glib/package.py
index baca1a5a45..67ead5f941 100644
--- a/var/spack/packages/glib/package.py
+++ b/var/spack/repos/builtin/packages/glib/package.py
@@ -16,4 +16,4 @@ class Glib(Package):
     def install(self, spec, prefix):
         configure("--prefix=%s" % prefix)
         make()
-        make("install")
+        make("install", parallel=False)
diff --git a/var/spack/packages/glm/package.py b/var/spack/repos/builtin/packages/glm/package.py
index d00c301b4c..d00c301b4c 100644
--- a/var/spack/packages/glm/package.py
+++ b/var/spack/repos/builtin/packages/glm/package.py
diff --git a/var/spack/packages/global/package.py b/var/spack/repos/builtin/packages/global/package.py
index e8f06516d9..e8f06516d9 100644
--- a/var/spack/packages/global/package.py
+++ b/var/spack/repos/builtin/packages/global/package.py
diff --git a/var/spack/packages/glog/package.py b/var/spack/repos/builtin/packages/glog/package.py
index d73386b394..d73386b394 100644
--- a/var/spack/packages/glog/package.py
+++ b/var/spack/repos/builtin/packages/glog/package.py
diff --git a/var/spack/packages/glpk/package.py b/var/spack/repos/builtin/packages/glpk/package.py
index 855f459fb3..855f459fb3 100644
--- a/var/spack/packages/glpk/package.py
+++ b/var/spack/repos/builtin/packages/glpk/package.py
diff --git a/var/spack/packages/gmp/package.py b/var/spack/repos/builtin/packages/gmp/package.py
index fe13de3b95..fe13de3b95 100644
--- a/var/spack/packages/gmp/package.py
+++ b/var/spack/repos/builtin/packages/gmp/package.py
diff --git a/var/spack/packages/gmsh/package.py b/var/spack/repos/builtin/packages/gmsh/package.py
index 9d759303cb..9d759303cb 100644
--- a/var/spack/packages/gmsh/package.py
+++ b/var/spack/repos/builtin/packages/gmsh/package.py
diff --git a/var/spack/packages/gnuplot/package.py b/var/spack/repos/builtin/packages/gnuplot/package.py
index 71c09bd43d..71c09bd43d 100644
--- a/var/spack/packages/gnuplot/package.py
+++ b/var/spack/repos/builtin/packages/gnuplot/package.py
diff --git a/var/spack/packages/gnutls/package.py b/var/spack/repos/builtin/packages/gnutls/package.py
index cf57a24a6d..cf57a24a6d 100644
--- a/var/spack/packages/gnutls/package.py
+++ b/var/spack/repos/builtin/packages/gnutls/package.py
diff --git a/var/spack/packages/gperf/package.py b/var/spack/repos/builtin/packages/gperf/package.py
index 32551b67b4..32551b67b4 100644
--- a/var/spack/packages/gperf/package.py
+++ b/var/spack/repos/builtin/packages/gperf/package.py
diff --git a/var/spack/packages/gperftools/package.py b/var/spack/repos/builtin/packages/gperftools/package.py
index 22b2e6c424..22b2e6c424 100644
--- a/var/spack/packages/gperftools/package.py
+++ b/var/spack/repos/builtin/packages/gperftools/package.py
diff --git a/var/spack/packages/graphlib/package.py b/var/spack/repos/builtin/packages/graphlib/package.py
index ddac0b2b66..ddac0b2b66 100644
--- a/var/spack/packages/graphlib/package.py
+++ b/var/spack/repos/builtin/packages/graphlib/package.py
diff --git a/var/spack/packages/graphviz/package.py b/var/spack/repos/builtin/packages/graphviz/package.py
index 7af7da1881..7af7da1881 100644
--- a/var/spack/packages/graphviz/package.py
+++ b/var/spack/repos/builtin/packages/graphviz/package.py
diff --git a/var/spack/packages/gsl/package.py b/var/spack/repos/builtin/packages/gsl/package.py
index 789eb49d85..789eb49d85 100644
--- a/var/spack/packages/gsl/package.py
+++ b/var/spack/repos/builtin/packages/gsl/package.py
diff --git a/var/spack/packages/gtkplus/package.py b/var/spack/repos/builtin/packages/gtkplus/package.py
index 0ebc7100de..0ebc7100de 100644
--- a/var/spack/packages/gtkplus/package.py
+++ b/var/spack/repos/builtin/packages/gtkplus/package.py
diff --git a/var/spack/packages/harfbuzz/package.py b/var/spack/repos/builtin/packages/harfbuzz/package.py
index ed7c42a909..ed7c42a909 100644
--- a/var/spack/packages/harfbuzz/package.py
+++ b/var/spack/repos/builtin/packages/harfbuzz/package.py
diff --git a/var/spack/packages/hdf5/package.py b/var/spack/repos/builtin/packages/hdf5/package.py
index 9a40164341..9a40164341 100644
--- a/var/spack/packages/hdf5/package.py
+++ b/var/spack/repos/builtin/packages/hdf5/package.py
diff --git a/var/spack/packages/hwloc/package.py b/var/spack/repos/builtin/packages/hwloc/package.py
index 7ebede76a3..7ebede76a3 100644
--- a/var/spack/packages/hwloc/package.py
+++ b/var/spack/repos/builtin/packages/hwloc/package.py
diff --git a/var/spack/packages/hypre/package.py b/var/spack/repos/builtin/packages/hypre/package.py
index 0f7f14dd89..0f7f14dd89 100644
--- a/var/spack/packages/hypre/package.py
+++ b/var/spack/repos/builtin/packages/hypre/package.py
diff --git a/var/spack/packages/icu/package.py b/var/spack/repos/builtin/packages/icu/package.py
index f256ec5712..f256ec5712 100644
--- a/var/spack/packages/icu/package.py
+++ b/var/spack/repos/builtin/packages/icu/package.py
diff --git a/var/spack/packages/icu4c/package.py b/var/spack/repos/builtin/packages/icu4c/package.py
index 55b44463b2..55b44463b2 100644
--- a/var/spack/packages/icu4c/package.py
+++ b/var/spack/repos/builtin/packages/icu4c/package.py
diff --git a/var/spack/packages/isl/package.py b/var/spack/repos/builtin/packages/isl/package.py
index 836ef3ea40..836ef3ea40 100644
--- a/var/spack/packages/isl/package.py
+++ b/var/spack/repos/builtin/packages/isl/package.py
diff --git a/var/spack/packages/jdk/package.py b/var/spack/repos/builtin/packages/jdk/package.py
index f8f5fc21bd..f8f5fc21bd 100644
--- a/var/spack/packages/jdk/package.py
+++ b/var/spack/repos/builtin/packages/jdk/package.py
diff --git a/var/spack/packages/jemalloc/package.py b/var/spack/repos/builtin/packages/jemalloc/package.py
index 8cec9ea75b..8cec9ea75b 100644
--- a/var/spack/packages/jemalloc/package.py
+++ b/var/spack/repos/builtin/packages/jemalloc/package.py
diff --git a/var/spack/packages/jpeg/package.py b/var/spack/repos/builtin/packages/jpeg/package.py
index 87820467db..87820467db 100644
--- a/var/spack/packages/jpeg/package.py
+++ b/var/spack/repos/builtin/packages/jpeg/package.py
diff --git a/var/spack/packages/judy/package.py b/var/spack/repos/builtin/packages/judy/package.py
index b8d8701383..b8d8701383 100644
--- a/var/spack/packages/judy/package.py
+++ b/var/spack/repos/builtin/packages/judy/package.py
diff --git a/var/spack/packages/julia/gc.patch b/var/spack/repos/builtin/packages/julia/gc.patch
index 6db69c6c1b..6db69c6c1b 100644
--- a/var/spack/packages/julia/gc.patch
+++ b/var/spack/repos/builtin/packages/julia/gc.patch
diff --git a/var/spack/packages/julia/package.py b/var/spack/repos/builtin/packages/julia/package.py
index d978842d9c..6900af38e4 100644
--- a/var/spack/packages/julia/package.py
+++ b/var/spack/repos/builtin/packages/julia/package.py
@@ -6,6 +6,7 @@ class Julia(Package):
     homepage = "http://julialang.org"
     url      = "http://github.com/JuliaLang/julia/releases/download/v0.4.2/julia-0.4.2.tar.gz"
 
+    version('0.4.3', '7b9f096798fca4bef262a64674bc2b52')
     version('0.4.2', 'ccfeb4f4090c8b31083f5e1ccb03eb06')
 
     patch('gc.patch')
diff --git a/var/spack/packages/launchmon/package.py b/var/spack/repos/builtin/packages/launchmon/package.py
index f97384a249..aec2fd6fa7 100644
--- a/var/spack/packages/launchmon/package.py
+++ b/var/spack/repos/builtin/packages/launchmon/package.py
@@ -37,6 +37,16 @@ class Launchmon(Package):
     depends_on('automake')
     depends_on('libtool')
 
+
+    def patch(self):
+        # This patch makes libgcrypt compile correctly with newer gcc versions.
+        mf = FileFilter('tools/libgcrypt/tests/Makefile.in')
+        mf.filter(r'(basic_LDADD\s*=\s*.*)',     r'\1 -lgpg-error')
+        mf.filter(r'(tsexp_LDADD\s*=\s*.*)',     r'\1 -lgpg-error')
+        mf.filter(r'(keygen_LDADD\s*=\s*.*)',    r'\1 -lgpg-error')
+        mf.filter(r'(benchmark_LDADD\s*=\s*.*)', r'\1 -lgpg-error')
+
+
     def install(self, spec, prefix):
         configure(
             "--prefix=" + prefix,
diff --git a/var/spack/packages/launchmon/patch.lmon_install_dir b/var/spack/repos/builtin/packages/launchmon/patch.lmon_install_dir
index 8a1d93fdc9..8a1d93fdc9 100644
--- a/var/spack/packages/launchmon/patch.lmon_install_dir
+++ b/var/spack/repos/builtin/packages/launchmon/patch.lmon_install_dir
diff --git a/var/spack/packages/lcms/package.py b/var/spack/repos/builtin/packages/lcms/package.py
index a53c2f997a..a53c2f997a 100644
--- a/var/spack/packages/lcms/package.py
+++ b/var/spack/repos/builtin/packages/lcms/package.py
diff --git a/var/spack/packages/leveldb/package.py b/var/spack/repos/builtin/packages/leveldb/package.py
index da68a9cbcb..da68a9cbcb 100644
--- a/var/spack/packages/leveldb/package.py
+++ b/var/spack/repos/builtin/packages/leveldb/package.py
diff --git a/var/spack/packages/libNBC/package.py b/var/spack/repos/builtin/packages/libNBC/package.py
index 550568e97d..550568e97d 100644
--- a/var/spack/packages/libNBC/package.py
+++ b/var/spack/repos/builtin/packages/libNBC/package.py
diff --git a/var/spack/packages/libarchive/package.py b/var/spack/repos/builtin/packages/libarchive/package.py
index cbd4b89cd0..cbd4b89cd0 100644
--- a/var/spack/packages/libarchive/package.py
+++ b/var/spack/repos/builtin/packages/libarchive/package.py
diff --git a/var/spack/packages/libcerf/package.py b/var/spack/repos/builtin/packages/libcerf/package.py
index 15e87ce4fe..15e87ce4fe 100644
--- a/var/spack/packages/libcerf/package.py
+++ b/var/spack/repos/builtin/packages/libcerf/package.py
diff --git a/var/spack/packages/libcircle/package.py b/var/spack/repos/builtin/packages/libcircle/package.py
index 3f7c996fb0..3f7c996fb0 100644
--- a/var/spack/packages/libcircle/package.py
+++ b/var/spack/repos/builtin/packages/libcircle/package.py
diff --git a/var/spack/packages/libdrm/package.py b/var/spack/repos/builtin/packages/libdrm/package.py
index 00736b7811..00736b7811 100644
--- a/var/spack/packages/libdrm/package.py
+++ b/var/spack/repos/builtin/packages/libdrm/package.py
diff --git a/var/spack/packages/libdwarf/package.py b/var/spack/repos/builtin/packages/libdwarf/package.py
index addb557519..addb557519 100644
--- a/var/spack/packages/libdwarf/package.py
+++ b/var/spack/repos/builtin/packages/libdwarf/package.py
diff --git a/var/spack/packages/libedit/package.py b/var/spack/repos/builtin/packages/libedit/package.py
index bcd5212b9e..bcd5212b9e 100644
--- a/var/spack/packages/libedit/package.py
+++ b/var/spack/repos/builtin/packages/libedit/package.py
diff --git a/var/spack/packages/libelf/package.py b/var/spack/repos/builtin/packages/libelf/package.py
index 29bc21b65c..29bc21b65c 100644
--- a/var/spack/packages/libelf/package.py
+++ b/var/spack/repos/builtin/packages/libelf/package.py
diff --git a/var/spack/packages/libevent/package.py b/var/spack/repos/builtin/packages/libevent/package.py
index 11b1083d67..11b1083d67 100644
--- a/var/spack/packages/libevent/package.py
+++ b/var/spack/repos/builtin/packages/libevent/package.py
diff --git a/var/spack/packages/libffi/package.py b/var/spack/repos/builtin/packages/libffi/package.py
index acec031717..acec031717 100644
--- a/var/spack/packages/libffi/package.py
+++ b/var/spack/repos/builtin/packages/libffi/package.py
diff --git a/var/spack/packages/libgcrypt/package.py b/var/spack/repos/builtin/packages/libgcrypt/package.py
index 1d0a57f317..1d0a57f317 100644
--- a/var/spack/packages/libgcrypt/package.py
+++ b/var/spack/repos/builtin/packages/libgcrypt/package.py
diff --git a/var/spack/packages/libgd/package.py b/var/spack/repos/builtin/packages/libgd/package.py
index d920957ef1..d920957ef1 100644
--- a/var/spack/packages/libgd/package.py
+++ b/var/spack/repos/builtin/packages/libgd/package.py
diff --git a/var/spack/packages/libgpg-error/package.py b/var/spack/repos/builtin/packages/libgpg-error/package.py
index 6c1d1a10a7..6c1d1a10a7 100644
--- a/var/spack/packages/libgpg-error/package.py
+++ b/var/spack/repos/builtin/packages/libgpg-error/package.py
diff --git a/var/spack/packages/libjpeg-turbo/package.py b/var/spack/repos/builtin/packages/libjpeg-turbo/package.py
index 07ee183947..07ee183947 100644
--- a/var/spack/packages/libjpeg-turbo/package.py
+++ b/var/spack/repos/builtin/packages/libjpeg-turbo/package.py
diff --git a/var/spack/packages/libjson-c/package.py b/var/spack/repos/builtin/packages/libjson-c/package.py
index c0801cce9c..c0801cce9c 100644
--- a/var/spack/packages/libjson-c/package.py
+++ b/var/spack/repos/builtin/packages/libjson-c/package.py
diff --git a/var/spack/packages/libmng/package.py b/var/spack/repos/builtin/packages/libmng/package.py
index e5336ea2c2..e5336ea2c2 100644
--- a/var/spack/packages/libmng/package.py
+++ b/var/spack/repos/builtin/packages/libmng/package.py
diff --git a/var/spack/packages/libmonitor/libmonitorkrell-0000.patch b/var/spack/repos/builtin/packages/libmonitor/libmonitorkrell-0000.patch
index 3a90106850..3a90106850 100644
--- a/var/spack/packages/libmonitor/libmonitorkrell-0000.patch
+++ b/var/spack/repos/builtin/packages/libmonitor/libmonitorkrell-0000.patch
diff --git a/var/spack/packages/libmonitor/libmonitorkrell-0001.patch b/var/spack/repos/builtin/packages/libmonitor/libmonitorkrell-0001.patch
index 85d69595c0..85d69595c0 100644
--- a/var/spack/packages/libmonitor/libmonitorkrell-0001.patch
+++ b/var/spack/repos/builtin/packages/libmonitor/libmonitorkrell-0001.patch
diff --git a/var/spack/packages/libmonitor/libmonitorkrell-0002.patch b/var/spack/repos/builtin/packages/libmonitor/libmonitorkrell-0002.patch
index 514dfdf13e..514dfdf13e 100644
--- a/var/spack/packages/libmonitor/libmonitorkrell-0002.patch
+++ b/var/spack/repos/builtin/packages/libmonitor/libmonitorkrell-0002.patch
diff --git a/var/spack/packages/libmonitor/package.py b/var/spack/repos/builtin/packages/libmonitor/package.py
index eecf1963e3..eecf1963e3 100644
--- a/var/spack/packages/libmonitor/package.py
+++ b/var/spack/repos/builtin/packages/libmonitor/package.py
diff --git a/var/spack/packages/libpciaccess/package.py b/var/spack/repos/builtin/packages/libpciaccess/package.py
index 0c0847d323..0c0847d323 100644
--- a/var/spack/packages/libpciaccess/package.py
+++ b/var/spack/repos/builtin/packages/libpciaccess/package.py
diff --git a/var/spack/packages/libpng/package.py b/var/spack/repos/builtin/packages/libpng/package.py
index e02b08663e..e02b08663e 100644
--- a/var/spack/packages/libpng/package.py
+++ b/var/spack/repos/builtin/packages/libpng/package.py
diff --git a/var/spack/packages/libsodium/package.py b/var/spack/repos/builtin/packages/libsodium/package.py
index 1c8a16d998..1c8a16d998 100644
--- a/var/spack/packages/libsodium/package.py
+++ b/var/spack/repos/builtin/packages/libsodium/package.py
diff --git a/var/spack/packages/libtiff/package.py b/var/spack/repos/builtin/packages/libtiff/package.py
index 63c6704cb8..63c6704cb8 100644
--- a/var/spack/packages/libtiff/package.py
+++ b/var/spack/repos/builtin/packages/libtiff/package.py
diff --git a/var/spack/packages/libtool/package.py b/var/spack/repos/builtin/packages/libtool/package.py
index a07daf9781..82a54953b2 100644
--- a/var/spack/packages/libtool/package.py
+++ b/var/spack/repos/builtin/packages/libtool/package.py
@@ -5,6 +5,7 @@ class Libtool(Package):
     homepage = "https://www.gnu.org/software/libtool/"
     url      = "http://ftpmirror.gnu.org/libtool/libtool-2.4.2.tar.gz"
 
+    version('2.4.6' , 'addf44b646ddb4e3919805aa88fa7c5e')
     version('2.4.2' , 'd2f3b7d4627e69e13514a40e72a24d50')
 
     def install(self, spec, prefix):
diff --git a/var/spack/packages/libunwind/package.py b/var/spack/repos/builtin/packages/libunwind/package.py
index 6f162f7b08..6f162f7b08 100644
--- a/var/spack/packages/libunwind/package.py
+++ b/var/spack/repos/builtin/packages/libunwind/package.py
diff --git a/var/spack/packages/libuuid/package.py b/var/spack/repos/builtin/packages/libuuid/package.py
index 373c5bfcac..373c5bfcac 100644
--- a/var/spack/packages/libuuid/package.py
+++ b/var/spack/repos/builtin/packages/libuuid/package.py
diff --git a/var/spack/packages/libxcb/package.py b/var/spack/repos/builtin/packages/libxcb/package.py
index 16a5525c0d..1dd5954c99 100644
--- a/var/spack/packages/libxcb/package.py
+++ b/var/spack/repos/builtin/packages/libxcb/package.py
@@ -1,9 +1,9 @@
 from spack import *
 
 class Libxcb(Package):
-    """The X protocol C-language Binding (XCB) is a replacement 
-    for Xlib featuring a small footprint, latency hiding, direct 
-    access to the protocol, improved threading support, and 
+    """The X protocol C-language Binding (XCB) is a replacement
+    for Xlib featuring a small footprint, latency hiding, direct
+    access to the protocol, improved threading support, and
     extensibility."""
 
     homepage = "http://xcb.freedesktop.org/"
@@ -14,6 +14,10 @@ class Libxcb(Package):
     depends_on("python")
     depends_on("xcb-proto")
 
+    def patch(self):
+        filter_file('typedef struct xcb_auth_info_t {', 'typedef struct {', 'src/xcb.h')
+
+
     def install(self, spec, prefix):
         configure("--prefix=%s" % prefix)
 
diff --git a/var/spack/packages/libxml2/package.py b/var/spack/repos/builtin/packages/libxml2/package.py
index 134e596963..134e596963 100644
--- a/var/spack/packages/libxml2/package.py
+++ b/var/spack/repos/builtin/packages/libxml2/package.py
diff --git a/var/spack/packages/libxshmfence/package.py b/var/spack/repos/builtin/packages/libxshmfence/package.py
index 3aa2448b46..3aa2448b46 100644
--- a/var/spack/packages/libxshmfence/package.py
+++ b/var/spack/repos/builtin/packages/libxshmfence/package.py
diff --git a/var/spack/packages/libxslt/package.py b/var/spack/repos/builtin/packages/libxslt/package.py
index f97332d020..f97332d020 100644
--- a/var/spack/packages/libxslt/package.py
+++ b/var/spack/repos/builtin/packages/libxslt/package.py
diff --git a/var/spack/packages/llvm-lld/package.py b/var/spack/repos/builtin/packages/llvm-lld/package.py
index cb91aa22a5..cb91aa22a5 100644
--- a/var/spack/packages/llvm-lld/package.py
+++ b/var/spack/repos/builtin/packages/llvm-lld/package.py
diff --git a/var/spack/repos/builtin/packages/llvm/package.py b/var/spack/repos/builtin/packages/llvm/package.py
new file mode 100644
index 0000000000..a2b2c6eccc
--- /dev/null
+++ b/var/spack/repos/builtin/packages/llvm/package.py
@@ -0,0 +1,218 @@
+##############################################################################
+# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Written by David Beckingsale, david@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License (as published by
+# the Free Software Foundation) version 2.1 dated February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public License
+# along with this program; if not, write to the Free Software Foundation,
+# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+import os, shutil
+
+
+class Llvm(Package):
+    """The LLVM Project is a collection of modular and reusable compiler and
+       toolchain technologies. Despite its name, LLVM has little to do with
+       traditional virtual machines, though it does provide helpful libraries
+       that can be used to build them. The name "LLVM" itself is not an acronym;
+       it is the full name of the project.
+    """
+    homepage = 'http://llvm.org/'
+    url = 'http://llvm.org/releases/3.7.0/llvm-3.7.0.src.tar.xz'
+
+    version('3.0', 'a8e5f5f1c1adebae7b4a654c376a6005', url='http://llvm.org/releases/3.0/llvm-3.0.tar.gz') # currently required by mesa package
+
+    variant('debug', default=False, description="Build a debug version of LLVM, this increases binary size by an order of magnitude, make sure you have 20-30gb of space available to build this")
+    variant('clang', default=True, description="Build the LLVM C/C++/Objective-C compiler frontend")
+    variant('lldb', default=True, description="Build the LLVM debugger")
+    variant('internal_unwind', default=True, description="Build the libcxxabi libunwind")
+    variant('polly', default=True, description="Build the LLVM polyhedral optimization plugin, only builds for 3.7.0+")
+    variant('libcxx', default=True, description="Build the LLVM C++ standard library")
+    variant('compiler-rt', default=True, description="Build the LLVM compiler runtime, including sanitizers")
+    variant('gold', default=True, description="Add support for LTO with the gold linker plugin")
+
+
+    # Build dependency
+    depends_on('cmake @2.8.12.2:')
+
+    # Universal dependency
+    depends_on('python@2.7:')
+
+    # lldb dependencies
+    depends_on('ncurses', when='+lldb')
+    depends_on('swig', when='+lldb')
+    depends_on('libedit', when='+lldb')
+
+    # gold support
+    depends_on('binutils+gold', when='+gold')
+
+    # polly plugin
+    depends_on('gmp', when='@:3.6.999 +polly')
+    depends_on('isl', when='@:3.6.999 +polly')
+
+    base_url =  'http://llvm.org/releases/%%(version)s/%(pkg)s-%%(version)s.src.tar.xz'
+    llvm_url = base_url % { 'pkg' : 'llvm'}
+
+    resources = {
+                    'compiler-rt' : {
+                        'url' : base_url % { 'pkg' : 'compiler-rt'},
+                        'destination' : 'projects',
+                        'placement' : 'compiler-rt',
+                    },
+                    'openmp' : {
+                        'url' : base_url % { 'pkg' : 'openmp'},
+                        'destination' : 'projects',
+                        'placement' : 'openmp',
+                    },
+                    'libcxx' : {
+                        'url' : base_url % { 'pkg' : 'libcxx'},
+                        'destination' : 'projects',
+                        'placement' : 'libcxx',
+                    },
+                    'libcxxabi' : {
+                        'url' :  base_url % { 'pkg' : 'libcxxabi'},
+                        'destination' : 'projects',
+                        'placement' : 'libcxxabi',
+                    },
+                    'clang' : {
+                        'url' :  base_url % { 'pkg' : 'cfe'},
+                        'destination' : 'tools',
+                        'placement' : 'clang',
+                    },
+                    'clang-tools-extra' : {
+                        'url' :  base_url % { 'pkg' : 'clang-tools-extra'},
+                        'destination' : 'tools/clang/tools',
+                        'placement' : 'extra',
+                    },
+                    'lldb' : {
+                        'url' :  base_url % { 'pkg' : 'lldb'},
+                        'destination' : 'tools',
+                        'placement' : 'lldb',
+                    },
+                    'polly' : {
+                        'url' :  base_url % { 'pkg' : 'polly'},
+                        'destination' : 'tools',
+                        'placement' : 'polly',
+                    },
+                    'llvm-libunwind' : {
+                        'url' :  base_url % { 'pkg' : 'libunwind'},
+                        'destination' : 'projects',
+                        'placement' : 'libunwind',
+                    },
+                }
+    releases = [
+                  {
+                    'version' : '3.7.0',
+                    'md5':'b98b9495e5655a672d6cb83e1a180f8e',
+                    'resources' : {
+                        'compiler-rt' : '383c10affd513026f08936b5525523f5',
+                        'openmp' : 'f482c86fdead50ba246a1a2b0bbf206f',
+                        'polly' : '32f93ffc9cc7e042df22089761558f8b',
+                        'libcxx' : '46aa5175cbe1ad42d6e9c995968e56dd',
+                        'libcxxabi' : '5aa769e2fca79fa5335cfae8f6258772',
+                        'clang' : '8f9d27335e7331cf0a4711e952f21f01',
+                        'clang-tools-extra' : 'd5a87dacb65d981a427a536f6964642e',
+                        'lldb' : 'e5931740400d1dc3e7db4c7ba2ceff68',
+                        'llvm-libunwind' : '9a75392eb7eb8ed5c0840007e212baf5',
+                        }
+                  },
+                  {
+                    'version' : '3.6.2',
+                    'md5':'0c1ee3597d75280dee603bae9cbf5cc2',
+                    'resources' : {
+                        'compiler-rt' : 'e3bc4eb7ba8c39a6fe90d6c988927f3c',
+                        'openmp' : '65dd5863b9b270960a96817e9152b123',
+                        'libcxx' : '22214c90697636ef960a49aef7c1823a',
+                        'libcxxabi' : '17518e361e4e228f193dd91e8ef54ba2',
+                        'clang' : 'ff862793682f714bb7862325b9c06e20',
+                        'clang-tools-extra' : '3ebc1dc41659fcec3db1b47d81575e06',
+                        'lldb' : '51e5eb552f777b950bb0ff326e60d5f0',
+                        }
+                  },
+                  {
+                    'version' : '3.5.1',
+                    'md5':'2d3d8004f38852aa679e5945b8ce0b14',
+                    'resources' : {
+                        'compiler-rt' : 'd626cfb8a9712cb92b820798ab5bc1f8',
+                        'openmp' : '121ddb10167d7fc38b1f7e4b029cf059',
+                        'libcxx' : '406f09b1dab529f3f7879f4d548329d2',
+                        'libcxxabi' : 'b22c707e8d474a99865ad3c521c3d464',
+                        'clang' : '93f9532f8f7e6f1d8e5c1116907051cb',
+                        'clang-tools-extra' : 'f13f31ed3038acadc6fa63fef812a246',
+                        'lldb' : 'cc5ea8a414c62c33e760517f8929a204',
+                        }
+                  },
+               ]
+
+    for release in releases:
+        version(release['version'], release['md5'], url=llvm_url % release)
+
+        for name, md5 in release['resources'].items():
+            resource(name=name,
+                     url=resources[name]['url'] % release,
+                     md5=md5,
+                     destination=resources[name]['destination'],
+                     when='@%(version)s' % release,
+                     placement=resources[name].get('placement', None))
+
+    def install(self, spec, prefix):
+        env['CXXFLAGS'] = self.compiler.cxx11_flag
+        cmake_args = [ arg for arg in std_cmake_args if 'BUILD_TYPE' not in arg ]
+
+        build_type = 'RelWithDebInfo' if '+debug' in spec else 'Release'
+        cmake_args.extend([
+                '..',
+                '-DCMAKE_BUILD_TYPE=' + build_type,
+                '-DLLVM_REQUIRES_RTTI:BOOL=ON',
+                '-DCLANG_DEFAULT_OPENMP_RUNTIME:STRING=libomp',
+                '-DPYTHON_EXECUTABLE:PATH=%s/bin/python' % spec['python'].prefix ])
+
+        if '+gold' in spec:
+            cmake_args.append('-DLLVM_BINUTILS_INCDIR=' + os.path.join( spec['binutils'].prefix, 'include'))
+        if '+polly' in spec:
+            cmake_args.append('-DLINK_POLLY_INTO_TOOLS:Bool=ON')
+        else:
+            cmake_args.append('-DLLVM_EXTERNAL_POLLY_BUILD:Bool=OFF')
+
+        if '+clang' not in spec:
+            cmake_args.append('-DLLVM_EXTERNAL_CLANG_BUILD:Bool=OFF')
+        if '+lldb' not in spec:
+            cmake_args.append('-DLLVM_EXTERNAL_LLDB_BUILD:Bool=OFF')
+        if '+internal_unwind' not in spec:
+            cmake_args.append('-DLLVM_EXTERNAL_LIBUNWIND_BUILD:Bool=OFF')
+        if '+libcxx' not in spec:
+            cmake_args.append('-DLLVM_EXTERNAL_LIBCXX_BUILD:Bool=OFF')
+            cmake_args.append('-DLLVM_EXTERNAL_LIBCXXABI_BUILD:Bool=OFF')
+        if '+compiler-rt' not in spec:
+            cmake_args.append('-DLLVM_EXTERNAL_COMPILER_RT_BUILD:Bool=OFF')
+
+        if  '+clang' not in spec:
+            if '+clang_extra' in spec:
+                raise SpackException('The clang_extra variant requires the clang variant to be selected')
+            if '+lldb' in spec:
+                raise SpackException('The lldb variant requires the clang variant to be selected')
+
+        with working_dir('spack-build', create=True):
+            cmake(*cmake_args)
+            make()
+            make("install")
+            query_path = os.path.join('bin', 'clang-query')
+            # Manually install clang-query, because llvm doesn't...
+            if os.path.exists(query_path):
+                shutil.copy(query_path, os.path.join(prefix, 'bin'))
diff --git a/var/spack/packages/lmdb/package.py b/var/spack/repos/builtin/packages/lmdb/package.py
index 875b8100c5..875b8100c5 100644
--- a/var/spack/packages/lmdb/package.py
+++ b/var/spack/repos/builtin/packages/lmdb/package.py
diff --git a/var/spack/packages/lmod/package.py b/var/spack/repos/builtin/packages/lmod/package.py
index d642594f92..d642594f92 100644
--- a/var/spack/packages/lmod/package.py
+++ b/var/spack/repos/builtin/packages/lmod/package.py
diff --git a/var/spack/packages/lua/package.py b/var/spack/repos/builtin/packages/lua/package.py
index ca8cfc5365..ca8cfc5365 100644
--- a/var/spack/packages/lua/package.py
+++ b/var/spack/repos/builtin/packages/lua/package.py
diff --git a/var/spack/packages/lwgrp/package.py b/var/spack/repos/builtin/packages/lwgrp/package.py
index 5963382b92..5963382b92 100644
--- a/var/spack/packages/lwgrp/package.py
+++ b/var/spack/repos/builtin/packages/lwgrp/package.py
diff --git a/var/spack/packages/lwm2/package.py b/var/spack/repos/builtin/packages/lwm2/package.py
index 31afff8816..31afff8816 100644
--- a/var/spack/packages/lwm2/package.py
+++ b/var/spack/repos/builtin/packages/lwm2/package.py
diff --git a/var/spack/packages/matio/package.py b/var/spack/repos/builtin/packages/matio/package.py
index 12cfb80926..12cfb80926 100644
--- a/var/spack/packages/matio/package.py
+++ b/var/spack/repos/builtin/packages/matio/package.py
diff --git a/var/spack/packages/mbedtls/package.py b/var/spack/repos/builtin/packages/mbedtls/package.py
index 7745522956..3da00cf417 100644
--- a/var/spack/packages/mbedtls/package.py
+++ b/var/spack/repos/builtin/packages/mbedtls/package.py
@@ -13,6 +13,8 @@ class Mbedtls(Package):
     version('2.1.3' , '7eb4cf1dfa68578a2c8dbd0b6fa752dd')
     version('1.3.16', '4144d7320c691f721aeb9e67a1bc38e0')
 
+    depends_on('cmake')
+
     def install(self, spec, prefix):
         cmake('.', *std_cmake_args)
 
diff --git a/var/spack/packages/memaxes/package.py b/var/spack/repos/builtin/packages/memaxes/package.py
index 4b1da558a2..4b1da558a2 100644
--- a/var/spack/packages/memaxes/package.py
+++ b/var/spack/repos/builtin/packages/memaxes/package.py
diff --git a/var/spack/packages/mesa/package.py b/var/spack/repos/builtin/packages/mesa/package.py
index 62da8c993b..62da8c993b 100644
--- a/var/spack/packages/mesa/package.py
+++ b/var/spack/repos/builtin/packages/mesa/package.py
diff --git a/var/spack/packages/metis/package.py b/var/spack/repos/builtin/packages/metis/package.py
index bbfc4de7d1..bbfc4de7d1 100644
--- a/var/spack/packages/metis/package.py
+++ b/var/spack/repos/builtin/packages/metis/package.py
diff --git a/var/spack/packages/mpc/package.py b/var/spack/repos/builtin/packages/mpc/package.py
index 50477a0ccb..50477a0ccb 100644
--- a/var/spack/packages/mpc/package.py
+++ b/var/spack/repos/builtin/packages/mpc/package.py
diff --git a/var/spack/packages/mpe2/mpe2.patch b/var/spack/repos/builtin/packages/mpe2/mpe2.patch
index 3ade1f04f4..3ade1f04f4 100644
--- a/var/spack/packages/mpe2/mpe2.patch
+++ b/var/spack/repos/builtin/packages/mpe2/mpe2.patch
diff --git a/var/spack/packages/mpe2/package.py b/var/spack/repos/builtin/packages/mpe2/package.py
index 27295172cc..27295172cc 100644
--- a/var/spack/packages/mpe2/package.py
+++ b/var/spack/repos/builtin/packages/mpe2/package.py
diff --git a/var/spack/packages/mpfr/package.py b/var/spack/repos/builtin/packages/mpfr/package.py
index 2758b0da2e..2758b0da2e 100644
--- a/var/spack/packages/mpfr/package.py
+++ b/var/spack/repos/builtin/packages/mpfr/package.py
diff --git a/var/spack/packages/mpibash/mpibash-4.3.patch b/var/spack/repos/builtin/packages/mpibash/mpibash-4.3.patch
index 17e285b0bf..17e285b0bf 100644
--- a/var/spack/packages/mpibash/mpibash-4.3.patch
+++ b/var/spack/repos/builtin/packages/mpibash/mpibash-4.3.patch
diff --git a/var/spack/packages/mpibash/package.py b/var/spack/repos/builtin/packages/mpibash/package.py
index d0f6dafed6..d0f6dafed6 100644
--- a/var/spack/packages/mpibash/package.py
+++ b/var/spack/repos/builtin/packages/mpibash/package.py
diff --git a/var/spack/packages/mpich/package.py b/var/spack/repos/builtin/packages/mpich/package.py
index 00b7dfda75..00b7dfda75 100644
--- a/var/spack/packages/mpich/package.py
+++ b/var/spack/repos/builtin/packages/mpich/package.py
diff --git a/var/spack/packages/mpileaks/package.py b/var/spack/repos/builtin/packages/mpileaks/package.py
index 661d9d66bf..661d9d66bf 100644
--- a/var/spack/packages/mpileaks/package.py
+++ b/var/spack/repos/builtin/packages/mpileaks/package.py
diff --git a/var/spack/packages/mrnet/package.py b/var/spack/repos/builtin/packages/mrnet/package.py
index fed944e45f..fed944e45f 100644
--- a/var/spack/packages/mrnet/package.py
+++ b/var/spack/repos/builtin/packages/mrnet/package.py
diff --git a/var/spack/packages/munge/package.py b/var/spack/repos/builtin/packages/munge/package.py
index c737ca0354..c737ca0354 100644
--- a/var/spack/packages/munge/package.py
+++ b/var/spack/repos/builtin/packages/munge/package.py
diff --git a/var/spack/packages/muster/package.py b/var/spack/repos/builtin/packages/muster/package.py
index 0dc2e5e086..0dc2e5e086 100644
--- a/var/spack/packages/muster/package.py
+++ b/var/spack/repos/builtin/packages/muster/package.py
diff --git a/var/spack/packages/mvapich2/ad_lustre_rwcontig_open_source.patch b/var/spack/repos/builtin/packages/mvapich2/ad_lustre_rwcontig_open_source.patch
index ff85845cf8..ff85845cf8 100644
--- a/var/spack/packages/mvapich2/ad_lustre_rwcontig_open_source.patch
+++ b/var/spack/repos/builtin/packages/mvapich2/ad_lustre_rwcontig_open_source.patch
diff --git a/var/spack/packages/mvapich2/package.py b/var/spack/repos/builtin/packages/mvapich2/package.py
index 23a11b3171..23a11b3171 100644
--- a/var/spack/packages/mvapich2/package.py
+++ b/var/spack/repos/builtin/packages/mvapich2/package.py
diff --git a/var/spack/packages/nasm/package.py b/var/spack/repos/builtin/packages/nasm/package.py
index 933b6a62c5..933b6a62c5 100644
--- a/var/spack/packages/nasm/package.py
+++ b/var/spack/repos/builtin/packages/nasm/package.py
diff --git a/var/spack/packages/ncdu/package.py b/var/spack/repos/builtin/packages/ncdu/package.py
index 234f9730d6..234f9730d6 100644
--- a/var/spack/packages/ncdu/package.py
+++ b/var/spack/repos/builtin/packages/ncdu/package.py
diff --git a/var/spack/packages/ncurses/package.py b/var/spack/repos/builtin/packages/ncurses/package.py
index 31f53b6c43..8dc808caac 100644
--- a/var/spack/packages/ncurses/package.py
+++ b/var/spack/repos/builtin/packages/ncurses/package.py
@@ -17,19 +17,14 @@ class Ncurses(Package):
     patch('patch_gcc_5.txt', when='%gcc@5.0:')
 
     def install(self, spec, prefix):
-        configure("--prefix=%s" % prefix,
-                  "--with-shared",
-                  "--enable-widec",
-                  "--disable-pc-files",
-                  "--without-ada")
+        opts = [
+            "--prefix=%s" % prefix,
+            "--with-shared",
+            "--with-cxx-shared",
+            "--enable-widec",
+            "--enable-overwrite",
+            "--disable-lib-suffixes",
+            "--without-ada"]
+        configure(*opts)
         make()
         make("install")
-
-        configure("--prefix=%s" % prefix,
-                  "--with-shared",
-                  "--disable-widec",
-                  "--disable-pc-files",
-                  "--without-ada")
-        make()
-        make("install")
-
diff --git a/var/spack/packages/ncurses/patch_gcc_5.txt b/var/spack/repos/builtin/packages/ncurses/patch_gcc_5.txt
index f85e07cb8d..f85e07cb8d 100644
--- a/var/spack/packages/ncurses/patch_gcc_5.txt
+++ b/var/spack/repos/builtin/packages/ncurses/patch_gcc_5.txt
diff --git a/var/spack/packages/netcdf/netcdf-4.3.3-mpi.patch b/var/spack/repos/builtin/packages/netcdf/netcdf-4.3.3-mpi.patch
index 46dda5fc9d..46dda5fc9d 100644
--- a/var/spack/packages/netcdf/netcdf-4.3.3-mpi.patch
+++ b/var/spack/repos/builtin/packages/netcdf/netcdf-4.3.3-mpi.patch
diff --git a/var/spack/packages/netcdf/package.py b/var/spack/repos/builtin/packages/netcdf/package.py
index e1e0d836c6..239644d894 100644
--- a/var/spack/packages/netcdf/package.py
+++ b/var/spack/repos/builtin/packages/netcdf/package.py
@@ -13,6 +13,7 @@ class Netcdf(Package):
     patch('netcdf-4.3.3-mpi.patch')
 
     # Dependencies:
+    depends_on("cmake @2.8.12:")
         # >HDF5
     depends_on("hdf5")
 
diff --git a/var/spack/packages/netgauge/package.py b/var/spack/repos/builtin/packages/netgauge/package.py
index 0ea42175c6..0ea42175c6 100644
--- a/var/spack/packages/netgauge/package.py
+++ b/var/spack/repos/builtin/packages/netgauge/package.py
diff --git a/var/spack/packages/netlib-blas/package.py b/var/spack/repos/builtin/packages/netlib-blas/package.py
index 85e97323d3..85e97323d3 100644
--- a/var/spack/packages/netlib-blas/package.py
+++ b/var/spack/repos/builtin/packages/netlib-blas/package.py
diff --git a/var/spack/packages/netlib-lapack/package.py b/var/spack/repos/builtin/packages/netlib-lapack/package.py
index fb6b99e27c..fb6b99e27c 100644
--- a/var/spack/packages/netlib-lapack/package.py
+++ b/var/spack/repos/builtin/packages/netlib-lapack/package.py
diff --git a/var/spack/packages/nettle/package.py b/var/spack/repos/builtin/packages/nettle/package.py
index cd600b0b87..cd600b0b87 100644
--- a/var/spack/packages/nettle/package.py
+++ b/var/spack/repos/builtin/packages/nettle/package.py
diff --git a/var/spack/packages/ninja/package.py b/var/spack/repos/builtin/packages/ninja/package.py
index 9e6bf4e358..9e6bf4e358 100644
--- a/var/spack/packages/ninja/package.py
+++ b/var/spack/repos/builtin/packages/ninja/package.py
diff --git a/var/spack/packages/ompss/package.py b/var/spack/repos/builtin/packages/ompss/package.py
index e09e0a624f..e09e0a624f 100644
--- a/var/spack/packages/ompss/package.py
+++ b/var/spack/repos/builtin/packages/ompss/package.py
diff --git a/var/spack/packages/ompt-openmp/package.py b/var/spack/repos/builtin/packages/ompt-openmp/package.py
index e5bcfb51f0..e5bcfb51f0 100644
--- a/var/spack/packages/ompt-openmp/package.py
+++ b/var/spack/repos/builtin/packages/ompt-openmp/package.py
diff --git a/var/spack/packages/opari2/package.py b/var/spack/repos/builtin/packages/opari2/package.py
index c68978f5c0..c68978f5c0 100644
--- a/var/spack/packages/opari2/package.py
+++ b/var/spack/repos/builtin/packages/opari2/package.py
diff --git a/var/spack/packages/openblas/package.py b/var/spack/repos/builtin/packages/openblas/package.py
index 9c8fa1c694..9c8fa1c694 100644
--- a/var/spack/packages/openblas/package.py
+++ b/var/spack/repos/builtin/packages/openblas/package.py
diff --git a/var/spack/packages/openmpi/ad_lustre_rwcontig_open_source.patch b/var/spack/repos/builtin/packages/openmpi/ad_lustre_rwcontig_open_source.patch
index daa825ccbe..daa825ccbe 100644
--- a/var/spack/packages/openmpi/ad_lustre_rwcontig_open_source.patch
+++ b/var/spack/repos/builtin/packages/openmpi/ad_lustre_rwcontig_open_source.patch
diff --git a/var/spack/packages/openmpi/configure.patch b/var/spack/repos/builtin/packages/openmpi/configure.patch
index 18fb42c1d1..18fb42c1d1 100644
--- a/var/spack/packages/openmpi/configure.patch
+++ b/var/spack/repos/builtin/packages/openmpi/configure.patch
diff --git a/var/spack/packages/openmpi/llnl-platforms.patch b/var/spack/repos/builtin/packages/openmpi/llnl-platforms.patch
index f515743c4d..f515743c4d 100644
--- a/var/spack/packages/openmpi/llnl-platforms.patch
+++ b/var/spack/repos/builtin/packages/openmpi/llnl-platforms.patch
diff --git a/var/spack/packages/openmpi/package.py b/var/spack/repos/builtin/packages/openmpi/package.py
index be2202fbbd..463719f9db 100644
--- a/var/spack/packages/openmpi/package.py
+++ b/var/spack/repos/builtin/packages/openmpi/package.py
@@ -13,29 +13,33 @@ class Openmpi(Package):
     """
 
     homepage = "http://www.open-mpi.org"
+    url = "http://www.open-mpi.org/software/ompi/v1.10/downloads/openmpi-1.10.1.tar.bz2"
+    list_url = "http://www.open-mpi.org/software/ompi/"
+    list_depth = 3
 
-    version('1.10.1', 'f0fcd77ed345b7eafb431968124ba16e',
-            url = "http://www.open-mpi.org/software/ompi/v1.10/downloads/openmpi-1.10.1.tar.bz2")
-    version('1.10.0', '280cf952de68369cebaca886c5ce0304',
-            url = "http://www.open-mpi.org/software/ompi/v1.10/downloads/openmpi-1.10.0.tar.bz2")
-    version('1.8.8', '0dab8e602372da1425e9242ae37faf8c',
-            url = 'http://www.open-mpi.org/software/ompi/v1.8/downloads/openmpi-1.8.8.tar.bz2')
-    version('1.6.5', '03aed2a4aa4d0b27196962a2a65fc475',
-            url = "http://www.open-mpi.org/software/ompi/v1.6/downloads/openmpi-1.6.5.tar.bz2")
+    version('1.10.1', 'f0fcd77ed345b7eafb431968124ba16e')
+    version('1.10.0', '280cf952de68369cebaca886c5ce0304')
+    version('1.8.8',  '0dab8e602372da1425e9242ae37faf8c')
+    version('1.6.5',  '03aed2a4aa4d0b27196962a2a65fc475')
 
     patch('ad_lustre_rwcontig_open_source.patch', when="@1.6.5")
     patch('llnl-platforms.patch', when="@1.6.5")
     patch('configure.patch', when="@1.10.0:")
 
-    provides('mpi@:2.2', when='@1.6.5')    # Open MPI 1.6.5 supports MPI-2.2
-    provides('mpi@:3.0', when='@1.8.8')    # Open MPI 1.8.8 supports MPI-3.0
-    provides('mpi@:3.0', when='@1.10.0')   # Open MPI 1.10.0 supports MPI-3.0
-    provides('mpi@:3.0', when='@1.10.1')   # Open MPI 1.10.1 supports MPI-3.0
+    variant('psm',   default=False, description='Build support for the PSM library.')
+    variant('verbs', default=False, description='Build support for OpenFabrics verbs.')
+
+    provides('mpi@:2.2', when='@1.6.5')
+    provides('mpi@:3.0', when='@1.7.5:')
 
 
     depends_on('hwloc')
 
 
+    def url_for_version(self, version):
+        return "http://www.open-mpi.org/software/ompi/v%s/downloads/openmpi-%s.tar.bz2" % (version.up_to(2), version)
+
+
     def setup_dependent_environment(self, module, spec, dep_spec):
         """For dependencies, make mpicc's use spack wrapper."""
         os.environ['OMPI_CC']  = 'cc'
@@ -45,9 +49,23 @@ class Openmpi(Package):
 
 
     def install(self, spec, prefix):
-        config_args = ["--prefix=%s" % prefix]
-
-        config_args.append("--with-hwloc=%s" % spec['hwloc'].prefix)
+        config_args = ["--prefix=%s" % prefix,
+                       "--with-hwloc=%s" % spec['hwloc'].prefix,
+                       "--with-tm",  # necessary for Torque support
+                       "--enable-shared",
+                       "--enable-static"]
+
+        # Variants
+        if '+psm' in spec:
+            config_args.append("--with-psm")
+
+        if '+verbs' in spec:
+            # Up through version 1.6, this option was previously named --with-openib
+            if spec.satisfies('@:1.6'):
+                config_args.append("--with-openib")
+            # In version 1.7, it was renamed to be --with-verbs
+            elif spec.satisfies('@1.7:'):
+                config_args.append("--with-verbs")
 
         # TODO: use variants for this, e.g. +lanl, +llnl, etc.
         # use this for LANL builds, but for LLNL builds, we need:
diff --git a/var/spack/packages/openspeedshop/package.py b/var/spack/repos/builtin/packages/openspeedshop/package.py
index 8c71bcb7c3..8c71bcb7c3 100644
--- a/var/spack/packages/openspeedshop/package.py
+++ b/var/spack/repos/builtin/packages/openspeedshop/package.py
diff --git a/var/spack/packages/openssl/package.py b/var/spack/repos/builtin/packages/openssl/package.py
index bbb169ec6b..bbb169ec6b 100644
--- a/var/spack/packages/openssl/package.py
+++ b/var/spack/repos/builtin/packages/openssl/package.py
diff --git a/var/spack/packages/otf/package.py b/var/spack/repos/builtin/packages/otf/package.py
index 52893dd265..52893dd265 100644
--- a/var/spack/packages/otf/package.py
+++ b/var/spack/repos/builtin/packages/otf/package.py
diff --git a/var/spack/packages/otf2/package.py b/var/spack/repos/builtin/packages/otf2/package.py
index c3d61bc228..c3d61bc228 100644
--- a/var/spack/packages/otf2/package.py
+++ b/var/spack/repos/builtin/packages/otf2/package.py
diff --git a/var/spack/packages/pango/package.py b/var/spack/repos/builtin/packages/pango/package.py
index df43625bf5..df43625bf5 100644
--- a/var/spack/packages/pango/package.py
+++ b/var/spack/repos/builtin/packages/pango/package.py
diff --git a/var/spack/packages/papi/package.py b/var/spack/repos/builtin/packages/papi/package.py
index 910e0aa9f9..910e0aa9f9 100644
--- a/var/spack/packages/papi/package.py
+++ b/var/spack/repos/builtin/packages/papi/package.py
diff --git a/var/spack/packages/paraver/package.py b/var/spack/repos/builtin/packages/paraver/package.py
index 5f8a153d4c..5f8a153d4c 100644
--- a/var/spack/packages/paraver/package.py
+++ b/var/spack/repos/builtin/packages/paraver/package.py
diff --git a/var/spack/packages/paraview/package.py b/var/spack/repos/builtin/packages/paraview/package.py
index aaab352e66..aaab352e66 100644
--- a/var/spack/packages/paraview/package.py
+++ b/var/spack/repos/builtin/packages/paraview/package.py
diff --git a/var/spack/packages/parmetis/package.py b/var/spack/repos/builtin/packages/parmetis/package.py
index c897dec7e4..c897dec7e4 100644
--- a/var/spack/packages/parmetis/package.py
+++ b/var/spack/repos/builtin/packages/parmetis/package.py
diff --git a/var/spack/packages/parpack/package.py b/var/spack/repos/builtin/packages/parpack/package.py
index 622aceca04..622aceca04 100644
--- a/var/spack/packages/parpack/package.py
+++ b/var/spack/repos/builtin/packages/parpack/package.py
diff --git a/var/spack/packages/patchelf/package.py b/var/spack/repos/builtin/packages/patchelf/package.py
index 036dc6bd17..036dc6bd17 100644
--- a/var/spack/packages/patchelf/package.py
+++ b/var/spack/repos/builtin/packages/patchelf/package.py
diff --git a/var/spack/packages/pcre/package.py b/var/spack/repos/builtin/packages/pcre/package.py
index e38d337e3d..e38d337e3d 100644
--- a/var/spack/packages/pcre/package.py
+++ b/var/spack/repos/builtin/packages/pcre/package.py
diff --git a/var/spack/packages/pcre2/package.py b/var/spack/repos/builtin/packages/pcre2/package.py
index 6a0244a15e..6a0244a15e 100644
--- a/var/spack/packages/pcre2/package.py
+++ b/var/spack/repos/builtin/packages/pcre2/package.py
diff --git a/var/spack/packages/pdt/package.py b/var/spack/repos/builtin/packages/pdt/package.py
index ce3b793e30..ce3b793e30 100644
--- a/var/spack/packages/pdt/package.py
+++ b/var/spack/repos/builtin/packages/pdt/package.py
diff --git a/var/spack/packages/petsc/package.py b/var/spack/repos/builtin/packages/petsc/package.py
index 87f700629d..87f700629d 100644
--- a/var/spack/packages/petsc/package.py
+++ b/var/spack/repos/builtin/packages/petsc/package.py
diff --git a/var/spack/packages/pidx/package.py b/var/spack/repos/builtin/packages/pidx/package.py
index 81aed62fb1..81aed62fb1 100644
--- a/var/spack/packages/pidx/package.py
+++ b/var/spack/repos/builtin/packages/pidx/package.py
diff --git a/var/spack/packages/pixman/package.py b/var/spack/repos/builtin/packages/pixman/package.py
index 895cbdbca5..895cbdbca5 100644
--- a/var/spack/packages/pixman/package.py
+++ b/var/spack/repos/builtin/packages/pixman/package.py
diff --git a/var/spack/packages/pkg-config/package.py b/var/spack/repos/builtin/packages/pkg-config/package.py
index 9964c6ce34..9964c6ce34 100644
--- a/var/spack/packages/pkg-config/package.py
+++ b/var/spack/repos/builtin/packages/pkg-config/package.py
diff --git a/var/spack/packages/pmgr_collective/package.py b/var/spack/repos/builtin/packages/pmgr_collective/package.py
index 1fc47c658f..1fc47c658f 100644
--- a/var/spack/packages/pmgr_collective/package.py
+++ b/var/spack/repos/builtin/packages/pmgr_collective/package.py
diff --git a/var/spack/packages/postgresql/package.py b/var/spack/repos/builtin/packages/postgresql/package.py
index 46922b7b71..46922b7b71 100644
--- a/var/spack/packages/postgresql/package.py
+++ b/var/spack/repos/builtin/packages/postgresql/package.py
diff --git a/var/spack/packages/ppl/package.py b/var/spack/repos/builtin/packages/ppl/package.py
index 018d5c523d..018d5c523d 100644
--- a/var/spack/packages/ppl/package.py
+++ b/var/spack/repos/builtin/packages/ppl/package.py
diff --git a/var/spack/packages/protobuf/package.py b/var/spack/repos/builtin/packages/protobuf/package.py
index 34085c7ce9..34085c7ce9 100644
--- a/var/spack/packages/protobuf/package.py
+++ b/var/spack/repos/builtin/packages/protobuf/package.py
diff --git a/var/spack/packages/py-astropy/package.py b/var/spack/repos/builtin/packages/py-astropy/package.py
index d138a514f6..d138a514f6 100644
--- a/var/spack/packages/py-astropy/package.py
+++ b/var/spack/repos/builtin/packages/py-astropy/package.py
diff --git a/var/spack/packages/py-basemap/package.py b/var/spack/repos/builtin/packages/py-basemap/package.py
index 8dfc99b28d..8dfc99b28d 100644
--- a/var/spack/packages/py-basemap/package.py
+++ b/var/spack/repos/builtin/packages/py-basemap/package.py
diff --git a/var/spack/packages/py-biopython/package.py b/var/spack/repos/builtin/packages/py-biopython/package.py
index 8ecaf48626..8ecaf48626 100644
--- a/var/spack/packages/py-biopython/package.py
+++ b/var/spack/repos/builtin/packages/py-biopython/package.py
diff --git a/var/spack/packages/py-blessings/package.py b/var/spack/repos/builtin/packages/py-blessings/package.py
index f2475a0efd..f2475a0efd 100644
--- a/var/spack/packages/py-blessings/package.py
+++ b/var/spack/repos/builtin/packages/py-blessings/package.py
diff --git a/var/spack/packages/py-cffi/package.py b/var/spack/repos/builtin/packages/py-cffi/package.py
index 909049a67c..909049a67c 100644
--- a/var/spack/packages/py-cffi/package.py
+++ b/var/spack/repos/builtin/packages/py-cffi/package.py
diff --git a/var/spack/packages/py-coverage/package.py b/var/spack/repos/builtin/packages/py-coverage/package.py
index 39b2ac3b01..39b2ac3b01 100644
--- a/var/spack/packages/py-coverage/package.py
+++ b/var/spack/repos/builtin/packages/py-coverage/package.py
diff --git a/var/spack/packages/py-cython/package.py b/var/spack/repos/builtin/packages/py-cython/package.py
index 68eb735ad9..68eb735ad9 100644
--- a/var/spack/packages/py-cython/package.py
+++ b/var/spack/repos/builtin/packages/py-cython/package.py
diff --git a/var/spack/packages/py-dateutil/package.py b/var/spack/repos/builtin/packages/py-dateutil/package.py
index 0a17f2f2d2..0a17f2f2d2 100644
--- a/var/spack/packages/py-dateutil/package.py
+++ b/var/spack/repos/builtin/packages/py-dateutil/package.py
diff --git a/var/spack/packages/py-epydoc/package.py b/var/spack/repos/builtin/packages/py-epydoc/package.py
index af05510504..af05510504 100644
--- a/var/spack/packages/py-epydoc/package.py
+++ b/var/spack/repos/builtin/packages/py-epydoc/package.py
diff --git a/var/spack/packages/py-funcsigs/package.py b/var/spack/repos/builtin/packages/py-funcsigs/package.py
index a428890288..a428890288 100644
--- a/var/spack/packages/py-funcsigs/package.py
+++ b/var/spack/repos/builtin/packages/py-funcsigs/package.py
diff --git a/var/spack/packages/py-genders/package.py b/var/spack/repos/builtin/packages/py-genders/package.py
index c49c8fd5b2..c49c8fd5b2 100644
--- a/var/spack/packages/py-genders/package.py
+++ b/var/spack/repos/builtin/packages/py-genders/package.py
diff --git a/var/spack/packages/py-gnuplot/package.py b/var/spack/repos/builtin/packages/py-gnuplot/package.py
index ede4472c03..ede4472c03 100644
--- a/var/spack/packages/py-gnuplot/package.py
+++ b/var/spack/repos/builtin/packages/py-gnuplot/package.py
diff --git a/var/spack/packages/py-h5py/package.py b/var/spack/repos/builtin/packages/py-h5py/package.py
index 6293da5407..6293da5407 100644
--- a/var/spack/packages/py-h5py/package.py
+++ b/var/spack/repos/builtin/packages/py-h5py/package.py
diff --git a/var/spack/packages/py-ipython/package.py b/var/spack/repos/builtin/packages/py-ipython/package.py
index 8d0e64a07f..8d0e64a07f 100644
--- a/var/spack/packages/py-ipython/package.py
+++ b/var/spack/repos/builtin/packages/py-ipython/package.py
diff --git a/var/spack/packages/py-libxml2/package.py b/var/spack/repos/builtin/packages/py-libxml2/package.py
index 59005428e4..59005428e4 100644
--- a/var/spack/packages/py-libxml2/package.py
+++ b/var/spack/repos/builtin/packages/py-libxml2/package.py
diff --git a/var/spack/packages/py-lockfile/package.py b/var/spack/repos/builtin/packages/py-lockfile/package.py
index 8722914d94..8722914d94 100644
--- a/var/spack/packages/py-lockfile/package.py
+++ b/var/spack/repos/builtin/packages/py-lockfile/package.py
diff --git a/var/spack/packages/py-mako/package.py b/var/spack/repos/builtin/packages/py-mako/package.py
index 3e91ffd8e5..3e91ffd8e5 100644
--- a/var/spack/packages/py-mako/package.py
+++ b/var/spack/repos/builtin/packages/py-mako/package.py
diff --git a/var/spack/packages/py-matplotlib/package.py b/var/spack/repos/builtin/packages/py-matplotlib/package.py
index 4776c581ee..2167735fb8 100644
--- a/var/spack/packages/py-matplotlib/package.py
+++ b/var/spack/repos/builtin/packages/py-matplotlib/package.py
@@ -26,6 +26,7 @@ class PyMatplotlib(Package):
     depends_on('py-pbr')
     depends_on('py-funcsigs')
 
+    depends_on('freetype')
     depends_on('qt', when='+gui')
     depends_on('bzip2')
     depends_on('tcl', when='+gui')
diff --git a/var/spack/packages/py-mock/package.py b/var/spack/repos/builtin/packages/py-mock/package.py
index e89af8802a..e89af8802a 100644
--- a/var/spack/packages/py-mock/package.py
+++ b/var/spack/repos/builtin/packages/py-mock/package.py
diff --git a/var/spack/packages/py-mpi4py/package.py b/var/spack/repos/builtin/packages/py-mpi4py/package.py
index 8001689a18..8001689a18 100644
--- a/var/spack/packages/py-mpi4py/package.py
+++ b/var/spack/repos/builtin/packages/py-mpi4py/package.py
diff --git a/var/spack/packages/py-mx/package.py b/var/spack/repos/builtin/packages/py-mx/package.py
index 717ee0562b..717ee0562b 100644
--- a/var/spack/packages/py-mx/package.py
+++ b/var/spack/repos/builtin/packages/py-mx/package.py
diff --git a/var/spack/packages/py-mysqldb1/package.py b/var/spack/repos/builtin/packages/py-mysqldb1/package.py
index fda02b4982..fda02b4982 100644
--- a/var/spack/packages/py-mysqldb1/package.py
+++ b/var/spack/repos/builtin/packages/py-mysqldb1/package.py
diff --git a/var/spack/packages/py-nose/package.py b/var/spack/repos/builtin/packages/py-nose/package.py
index e7c6cf0264..e7c6cf0264 100644
--- a/var/spack/packages/py-nose/package.py
+++ b/var/spack/repos/builtin/packages/py-nose/package.py
diff --git a/var/spack/packages/py-numexpr/package.py b/var/spack/repos/builtin/packages/py-numexpr/package.py
index 89f8a525b1..89f8a525b1 100644
--- a/var/spack/packages/py-numexpr/package.py
+++ b/var/spack/repos/builtin/packages/py-numexpr/package.py
diff --git a/var/spack/packages/py-numpy/package.py b/var/spack/repos/builtin/packages/py-numpy/package.py
index 4c085fba6e..0354811186 100644
--- a/var/spack/packages/py-numpy/package.py
+++ b/var/spack/repos/builtin/packages/py-numpy/package.py
@@ -7,15 +7,18 @@ class PyNumpy(Package):
 
     version('1.9.1', '78842b73560ec378142665e712ae4ad9')
     version('1.9.2', 'a1ed53432dbcd256398898d35bc8e645')
-    
+
+    variant('blas', default=True)
+
     extends('python')
     depends_on('py-nose')
-    depends_on('netlib-blas+fpic')
-    depends_on('netlib-lapack+shared')
+    depends_on('netlib-blas+fpic', when='+blas')
+    depends_on('netlib-lapack+shared', when='+blas')
 
     def install(self, spec, prefix):
-        with open('site.cfg', 'w') as f:
-            f.write('[DEFAULT]\n')
-            f.write('libraries=lapack,blas\n')
-            f.write('library_dirs=%s/lib:%s/lib\n' % (spec['blas'].prefix, spec['lapack'].prefix))
+        if '+blas' in spec:
+            with open('site.cfg', 'w') as f:
+                f.write('[DEFAULT]\n')
+                f.write('libraries=lapack,blas\n')
+                f.write('library_dirs=%s/lib:%s/lib\n' % (spec['blas'].prefix, spec['lapack'].prefix))
         python('setup.py', 'install', '--prefix=%s' % prefix)
diff --git a/var/spack/packages/py-pandas/package.py b/var/spack/repos/builtin/packages/py-pandas/package.py
index 5b9997faa9..5b9997faa9 100644
--- a/var/spack/packages/py-pandas/package.py
+++ b/var/spack/repos/builtin/packages/py-pandas/package.py
diff --git a/var/spack/packages/py-pbr/package.py b/var/spack/repos/builtin/packages/py-pbr/package.py
index 02957483d4..02957483d4 100644
--- a/var/spack/packages/py-pbr/package.py
+++ b/var/spack/repos/builtin/packages/py-pbr/package.py
diff --git a/var/spack/packages/py-periodictable/package.py b/var/spack/repos/builtin/packages/py-periodictable/package.py
index 6a495a1cc8..6a495a1cc8 100644
--- a/var/spack/packages/py-periodictable/package.py
+++ b/var/spack/repos/builtin/packages/py-periodictable/package.py
diff --git a/var/spack/packages/py-pexpect/package.py b/var/spack/repos/builtin/packages/py-pexpect/package.py
index ff5fac84e0..ff5fac84e0 100644
--- a/var/spack/packages/py-pexpect/package.py
+++ b/var/spack/repos/builtin/packages/py-pexpect/package.py
diff --git a/var/spack/packages/py-pil/package.py b/var/spack/repos/builtin/packages/py-pil/package.py
index 743b761981..743b761981 100644
--- a/var/spack/packages/py-pil/package.py
+++ b/var/spack/repos/builtin/packages/py-pil/package.py
diff --git a/var/spack/packages/py-pillow/package.py b/var/spack/repos/builtin/packages/py-pillow/package.py
index adc8507bd5..adc8507bd5 100644
--- a/var/spack/packages/py-pillow/package.py
+++ b/var/spack/repos/builtin/packages/py-pillow/package.py
diff --git a/var/spack/packages/py-pmw/package.py b/var/spack/repos/builtin/packages/py-pmw/package.py
index 56131811e9..56131811e9 100644
--- a/var/spack/packages/py-pmw/package.py
+++ b/var/spack/repos/builtin/packages/py-pmw/package.py
diff --git a/var/spack/packages/py-pychecker/package.py b/var/spack/repos/builtin/packages/py-pychecker/package.py
index bda5a746aa..bda5a746aa 100644
--- a/var/spack/packages/py-pychecker/package.py
+++ b/var/spack/repos/builtin/packages/py-pychecker/package.py
diff --git a/var/spack/packages/py-pycparser/package.py b/var/spack/repos/builtin/packages/py-pycparser/package.py
index f2bb679d25..f2bb679d25 100644
--- a/var/spack/packages/py-pycparser/package.py
+++ b/var/spack/repos/builtin/packages/py-pycparser/package.py
diff --git a/var/spack/packages/py-pyelftools/package.py b/var/spack/repos/builtin/packages/py-pyelftools/package.py
index d5ad32e624..d5ad32e624 100644
--- a/var/spack/packages/py-pyelftools/package.py
+++ b/var/spack/repos/builtin/packages/py-pyelftools/package.py
diff --git a/var/spack/packages/py-pygments/package.py b/var/spack/repos/builtin/packages/py-pygments/package.py
index 7e07bf6869..7e07bf6869 100644
--- a/var/spack/packages/py-pygments/package.py
+++ b/var/spack/repos/builtin/packages/py-pygments/package.py
diff --git a/var/spack/packages/py-pylint/package.py b/var/spack/repos/builtin/packages/py-pylint/package.py
index 9579708c29..9579708c29 100644
--- a/var/spack/packages/py-pylint/package.py
+++ b/var/spack/repos/builtin/packages/py-pylint/package.py
diff --git a/var/spack/packages/py-pypar/package.py b/var/spack/repos/builtin/packages/py-pypar/package.py
index af9c76ccd8..af9c76ccd8 100644
--- a/var/spack/packages/py-pypar/package.py
+++ b/var/spack/repos/builtin/packages/py-pypar/package.py
diff --git a/var/spack/packages/py-pyparsing/package.py b/var/spack/repos/builtin/packages/py-pyparsing/package.py
index a6e50ad139..a6e50ad139 100644
--- a/var/spack/packages/py-pyparsing/package.py
+++ b/var/spack/repos/builtin/packages/py-pyparsing/package.py
diff --git a/var/spack/packages/py-pyqt/package.py b/var/spack/repos/builtin/packages/py-pyqt/package.py
index 8edca105bb..8edca105bb 100644
--- a/var/spack/packages/py-pyqt/package.py
+++ b/var/spack/repos/builtin/packages/py-pyqt/package.py
diff --git a/var/spack/packages/py-pyside/package.py b/var/spack/repos/builtin/packages/py-pyside/package.py
index ffa433e18e..ffa433e18e 100644
--- a/var/spack/packages/py-pyside/package.py
+++ b/var/spack/repos/builtin/packages/py-pyside/package.py
diff --git a/var/spack/packages/py-pytables/package.py b/var/spack/repos/builtin/packages/py-pytables/package.py
index a5b1e78ab3..a5b1e78ab3 100644
--- a/var/spack/packages/py-pytables/package.py
+++ b/var/spack/repos/builtin/packages/py-pytables/package.py
diff --git a/var/spack/packages/py-python-daemon/package.py b/var/spack/repos/builtin/packages/py-python-daemon/package.py
index 12cbe9101c..12cbe9101c 100644
--- a/var/spack/packages/py-python-daemon/package.py
+++ b/var/spack/repos/builtin/packages/py-python-daemon/package.py
diff --git a/var/spack/packages/py-pytz/package.py b/var/spack/repos/builtin/packages/py-pytz/package.py
index da6311a784..da6311a784 100644
--- a/var/spack/packages/py-pytz/package.py
+++ b/var/spack/repos/builtin/packages/py-pytz/package.py
diff --git a/var/spack/packages/py-rpy2/package.py b/var/spack/repos/builtin/packages/py-rpy2/package.py
index a0b03d03e3..a0b03d03e3 100644
--- a/var/spack/packages/py-rpy2/package.py
+++ b/var/spack/repos/builtin/packages/py-rpy2/package.py
diff --git a/var/spack/packages/py-scientificpython/package.py b/var/spack/repos/builtin/packages/py-scientificpython/package.py
index df2c86caac..df2c86caac 100644
--- a/var/spack/packages/py-scientificpython/package.py
+++ b/var/spack/repos/builtin/packages/py-scientificpython/package.py
diff --git a/var/spack/packages/py-scikit-learn/package.py b/var/spack/repos/builtin/packages/py-scikit-learn/package.py
index 5b078ce901..5b078ce901 100644
--- a/var/spack/packages/py-scikit-learn/package.py
+++ b/var/spack/repos/builtin/packages/py-scikit-learn/package.py
diff --git a/var/spack/packages/py-scipy/package.py b/var/spack/repos/builtin/packages/py-scipy/package.py
index 3a1124cc15..3a1124cc15 100644
--- a/var/spack/packages/py-scipy/package.py
+++ b/var/spack/repos/builtin/packages/py-scipy/package.py
diff --git a/var/spack/packages/py-setuptools/package.py b/var/spack/repos/builtin/packages/py-setuptools/package.py
index 26c048bfd4..26c048bfd4 100644
--- a/var/spack/packages/py-setuptools/package.py
+++ b/var/spack/repos/builtin/packages/py-setuptools/package.py
diff --git a/var/spack/packages/py-shiboken/package.py b/var/spack/repos/builtin/packages/py-shiboken/package.py
index e4bf4ce07e..e4bf4ce07e 100644
--- a/var/spack/packages/py-shiboken/package.py
+++ b/var/spack/repos/builtin/packages/py-shiboken/package.py
diff --git a/var/spack/packages/py-sip/package.py b/var/spack/repos/builtin/packages/py-sip/package.py
index e4a6fb6961..e4a6fb6961 100644
--- a/var/spack/packages/py-sip/package.py
+++ b/var/spack/repos/builtin/packages/py-sip/package.py
diff --git a/var/spack/packages/py-six/package.py b/var/spack/repos/builtin/packages/py-six/package.py
index 05c5bd00a9..05c5bd00a9 100644
--- a/var/spack/packages/py-six/package.py
+++ b/var/spack/repos/builtin/packages/py-six/package.py
diff --git a/var/spack/packages/py-sphinx/package.py b/var/spack/repos/builtin/packages/py-sphinx/package.py
index ec2e89a098..ec2e89a098 100644
--- a/var/spack/packages/py-sphinx/package.py
+++ b/var/spack/repos/builtin/packages/py-sphinx/package.py
diff --git a/var/spack/packages/py-sympy/package.py b/var/spack/repos/builtin/packages/py-sympy/package.py
index c17e35b95f..c17e35b95f 100644
--- a/var/spack/packages/py-sympy/package.py
+++ b/var/spack/repos/builtin/packages/py-sympy/package.py
diff --git a/var/spack/packages/py-tappy/package.py b/var/spack/repos/builtin/packages/py-tappy/package.py
index df61a909da..df61a909da 100644
--- a/var/spack/packages/py-tappy/package.py
+++ b/var/spack/repos/builtin/packages/py-tappy/package.py
diff --git a/var/spack/packages/py-twisted/package.py b/var/spack/repos/builtin/packages/py-twisted/package.py
index 2fdebb6cb9..2fdebb6cb9 100644
--- a/var/spack/packages/py-twisted/package.py
+++ b/var/spack/repos/builtin/packages/py-twisted/package.py
diff --git a/var/spack/packages/py-urwid/package.py b/var/spack/repos/builtin/packages/py-urwid/package.py
index aaa11c681d..aaa11c681d 100644
--- a/var/spack/packages/py-urwid/package.py
+++ b/var/spack/repos/builtin/packages/py-urwid/package.py
diff --git a/var/spack/packages/py-virtualenv/package.py b/var/spack/repos/builtin/packages/py-virtualenv/package.py
index 037a6fc59f..037a6fc59f 100644
--- a/var/spack/packages/py-virtualenv/package.py
+++ b/var/spack/repos/builtin/packages/py-virtualenv/package.py
diff --git a/var/spack/packages/py-yapf/package.py b/var/spack/repos/builtin/packages/py-yapf/package.py
index 12ef191515..12ef191515 100644
--- a/var/spack/packages/py-yapf/package.py
+++ b/var/spack/repos/builtin/packages/py-yapf/package.py
diff --git a/var/spack/packages/python/package.py b/var/spack/repos/builtin/packages/python/package.py
index a1ce06feb0..a1ce06feb0 100644
--- a/var/spack/packages/python/package.py
+++ b/var/spack/repos/builtin/packages/python/package.py
diff --git a/var/spack/packages/qhull/package.py b/var/spack/repos/builtin/packages/qhull/package.py
index 9da4078a70..f6712ced38 100644
--- a/var/spack/packages/qhull/package.py
+++ b/var/spack/repos/builtin/packages/qhull/package.py
@@ -20,6 +20,9 @@ class Qhull(Package):
     version('1.0', 'd0f978c0d8dfb2e919caefa56ea2953c',
             url="http://www.qhull.org/download/qhull-2012.1-src.tgz")
 
+    # https://github.com/qhull/qhull/pull/5
+    patch('qhull-iterator.patch')
+
     def install(self, spec, prefix):
         with working_dir('spack-build', create=True):
             cmake('..', *std_cmake_args)
diff --git a/var/spack/repos/builtin/packages/qhull/qhull-iterator.patch b/var/spack/repos/builtin/packages/qhull/qhull-iterator.patch
new file mode 100644
index 0000000000..88e931d84f
--- /dev/null
+++ b/var/spack/repos/builtin/packages/qhull/qhull-iterator.patch
@@ -0,0 +1,45 @@
+From 93f4b306c54bb5be7724dcc19c6e747b62ac76dd Mon Sep 17 00:00:00 2001
+From: Ben Boeckel <mathstuf@gmail.com>
+Date: Thu, 28 May 2015 11:12:25 -0400
+Subject: [PATCH] iterator: use the header
+
+Standard libraries are doing funky things with inline namespaces which
+make these declarations impossible to get right. Just include the
+header.
+---
+ src/libqhullcpp/QhullIterator.h   | 3 +--
+ src/libqhullcpp/QhullLinkedList.h | 5 +----
+ 2 files changed, 2 insertions(+), 6 deletions(-)
+
+diff --git a/src/libqhullcpp/QhullIterator.h b/src/libqhullcpp/QhullIterator.h
+index 9dde894..49f3a3b 100644
+--- a/src/libqhullcpp/QhullIterator.h
++++ b/src/libqhullcpp/QhullIterator.h
+@@ -14,10 +14,9 @@ extern "C" {
+ }
+ 
+ #include <assert.h>
++#include <iterator>
+ #include <string>
+ #include <vector>
+-//! Avoid dependence on <iterator>
+-namespace std { struct bidirectional_iterator_tag; struct random_access_iterator_tag; }
+ 
+ namespace orgQhull {
+ 
+diff --git a/src/libqhullcpp/QhullLinkedList.h b/src/libqhullcpp/QhullLinkedList.h
+index d828ac6..00b9008 100644
+--- a/src/libqhullcpp/QhullLinkedList.h
++++ b/src/libqhullcpp/QhullLinkedList.h
+@@ -9,10 +9,7 @@
+ #ifndef QHULLLINKEDLIST_H
+ #define QHULLLINKEDLIST_H
+ 
+-namespace std {
+-    struct bidirectional_iterator_tag;
+-    struct random_access_iterator_tag;
+-}//std
++#include <iterator>
+ 
+ #include "QhullError.h"
+ extern "C" {
diff --git a/var/spack/packages/qt/package.py b/var/spack/repos/builtin/packages/qt/package.py
index e8d843519d..e8d843519d 100644
--- a/var/spack/packages/qt/package.py
+++ b/var/spack/repos/builtin/packages/qt/package.py
diff --git a/var/spack/packages/qt/qt3krell.patch b/var/spack/repos/builtin/packages/qt/qt3krell.patch
index 3333eeacd4..3333eeacd4 100644
--- a/var/spack/packages/qt/qt3krell.patch
+++ b/var/spack/repos/builtin/packages/qt/qt3krell.patch
diff --git a/var/spack/packages/qthreads/package.py b/var/spack/repos/builtin/packages/qthreads/package.py
index dacdb71524..dacdb71524 100644
--- a/var/spack/packages/qthreads/package.py
+++ b/var/spack/repos/builtin/packages/qthreads/package.py
diff --git a/var/spack/packages/ravel/package.py b/var/spack/repos/builtin/packages/ravel/package.py
index d774a0ab86..d774a0ab86 100644
--- a/var/spack/packages/ravel/package.py
+++ b/var/spack/repos/builtin/packages/ravel/package.py
diff --git a/var/spack/packages/readline/package.py b/var/spack/repos/builtin/packages/readline/package.py
index 1b870e0e7f..1b870e0e7f 100644
--- a/var/spack/packages/readline/package.py
+++ b/var/spack/repos/builtin/packages/readline/package.py
diff --git a/var/spack/packages/rose/add_spack_compiler_recognition.patch b/var/spack/repos/builtin/packages/rose/add_spack_compiler_recognition.patch
index ce61ae4e4c..ce61ae4e4c 100644
--- a/var/spack/packages/rose/add_spack_compiler_recognition.patch
+++ b/var/spack/repos/builtin/packages/rose/add_spack_compiler_recognition.patch
diff --git a/var/spack/packages/rose/package.py b/var/spack/repos/builtin/packages/rose/package.py
index 1d7294acab..1d7294acab 100644
--- a/var/spack/packages/rose/package.py
+++ b/var/spack/repos/builtin/packages/rose/package.py
diff --git a/var/spack/packages/rsync/package.py b/var/spack/repos/builtin/packages/rsync/package.py
index 76aec3096d..76aec3096d 100644
--- a/var/spack/packages/rsync/package.py
+++ b/var/spack/repos/builtin/packages/rsync/package.py
diff --git a/var/spack/packages/ruby/package.py b/var/spack/repos/builtin/packages/ruby/package.py
index 6b6242362c..6b6242362c 100644
--- a/var/spack/packages/ruby/package.py
+++ b/var/spack/repos/builtin/packages/ruby/package.py
diff --git a/var/spack/packages/samtools/package.py b/var/spack/repos/builtin/packages/samtools/package.py
index 72900398d8..72900398d8 100644
--- a/var/spack/packages/samtools/package.py
+++ b/var/spack/repos/builtin/packages/samtools/package.py
diff --git a/var/spack/packages/samtools/samtools1.2.patch b/var/spack/repos/builtin/packages/samtools/samtools1.2.patch
index ead3ab4e2c..ead3ab4e2c 100644
--- a/var/spack/packages/samtools/samtools1.2.patch
+++ b/var/spack/repos/builtin/packages/samtools/samtools1.2.patch
diff --git a/var/spack/packages/scalasca/package.py b/var/spack/repos/builtin/packages/scalasca/package.py
index 6de14564b2..6de14564b2 100644
--- a/var/spack/packages/scalasca/package.py
+++ b/var/spack/repos/builtin/packages/scalasca/package.py
diff --git a/var/spack/packages/scorep/package.py b/var/spack/repos/builtin/packages/scorep/package.py
index 5127e814b6..5127e814b6 100644
--- a/var/spack/packages/scorep/package.py
+++ b/var/spack/repos/builtin/packages/scorep/package.py
diff --git a/var/spack/packages/scotch/package.py b/var/spack/repos/builtin/packages/scotch/package.py
index 8229ed8686..8229ed8686 100644
--- a/var/spack/packages/scotch/package.py
+++ b/var/spack/repos/builtin/packages/scotch/package.py
diff --git a/var/spack/packages/scr/package.py b/var/spack/repos/builtin/packages/scr/package.py
index 1408dce678..1408dce678 100644
--- a/var/spack/packages/scr/package.py
+++ b/var/spack/repos/builtin/packages/scr/package.py
diff --git a/var/spack/packages/silo/package.py b/var/spack/repos/builtin/packages/silo/package.py
index 9eda11df15..9eda11df15 100644
--- a/var/spack/packages/silo/package.py
+++ b/var/spack/repos/builtin/packages/silo/package.py
diff --git a/var/spack/packages/snappy/package.py b/var/spack/repos/builtin/packages/snappy/package.py
index c8f9ceef7d..c8f9ceef7d 100644
--- a/var/spack/packages/snappy/package.py
+++ b/var/spack/repos/builtin/packages/snappy/package.py
diff --git a/var/spack/packages/sparsehash/package.py b/var/spack/repos/builtin/packages/sparsehash/package.py
index 7decaeb89b..7decaeb89b 100644
--- a/var/spack/packages/sparsehash/package.py
+++ b/var/spack/repos/builtin/packages/sparsehash/package.py
diff --git a/var/spack/packages/spindle/package.py b/var/spack/repos/builtin/packages/spindle/package.py
index a20753458a..a20753458a 100644
--- a/var/spack/packages/spindle/package.py
+++ b/var/spack/repos/builtin/packages/spindle/package.py
diff --git a/var/spack/packages/spot/package.py b/var/spack/repos/builtin/packages/spot/package.py
index 9e539277ae..9e539277ae 100644
--- a/var/spack/packages/spot/package.py
+++ b/var/spack/repos/builtin/packages/spot/package.py
diff --git a/var/spack/packages/sqlite/package.py b/var/spack/repos/builtin/packages/sqlite/package.py
index 1cf2d30239..1cf2d30239 100644
--- a/var/spack/packages/sqlite/package.py
+++ b/var/spack/repos/builtin/packages/sqlite/package.py
diff --git a/var/spack/packages/stat/configure_mpicxx.patch b/var/spack/repos/builtin/packages/stat/configure_mpicxx.patch
index e09056d95c..e09056d95c 100644
--- a/var/spack/packages/stat/configure_mpicxx.patch
+++ b/var/spack/repos/builtin/packages/stat/configure_mpicxx.patch
diff --git a/var/spack/packages/stat/package.py b/var/spack/repos/builtin/packages/stat/package.py
index 5d81e62731..5d81e62731 100644
--- a/var/spack/packages/stat/package.py
+++ b/var/spack/repos/builtin/packages/stat/package.py
diff --git a/var/spack/packages/sundials/package.py b/var/spack/repos/builtin/packages/sundials/package.py
index 7e025a8244..7e025a8244 100644
--- a/var/spack/packages/sundials/package.py
+++ b/var/spack/repos/builtin/packages/sundials/package.py
diff --git a/var/spack/packages/swig/package.py b/var/spack/repos/builtin/packages/swig/package.py
index 8d46c4fe46..8d46c4fe46 100644
--- a/var/spack/packages/swig/package.py
+++ b/var/spack/repos/builtin/packages/swig/package.py
diff --git a/var/spack/packages/szip/package.py b/var/spack/repos/builtin/packages/szip/package.py
index c48c5b431e..c48c5b431e 100644
--- a/var/spack/packages/szip/package.py
+++ b/var/spack/repos/builtin/packages/szip/package.py
diff --git a/var/spack/repos/builtin/packages/tar/package.py b/var/spack/repos/builtin/packages/tar/package.py
new file mode 100644
index 0000000000..539174017c
--- /dev/null
+++ b/var/spack/repos/builtin/packages/tar/package.py
@@ -0,0 +1,13 @@
+from spack import *
+
+class Tar(Package):
+    """GNU Tar provides the ability to create tar archives, as well as various other kinds of manipulation."""
+    homepage = "https://www.gnu.org/software/tar/"
+    url      = "http://ftp.gnu.org/gnu/tar/tar-1.28.tar.gz"
+
+    version('1.28', '6ea3dbea1f2b0409b234048e021a9fd7')
+
+    def install(self, spec, prefix):
+        configure("--prefix=%s" % prefix)
+        make()
+        make('install')
diff --git a/var/spack/packages/task/package.py b/var/spack/repos/builtin/packages/task/package.py
index 07f44cc45b..07f44cc45b 100644
--- a/var/spack/packages/task/package.py
+++ b/var/spack/repos/builtin/packages/task/package.py
diff --git a/var/spack/packages/taskd/package.py b/var/spack/repos/builtin/packages/taskd/package.py
index 66bc0cb484..66bc0cb484 100644
--- a/var/spack/packages/taskd/package.py
+++ b/var/spack/repos/builtin/packages/taskd/package.py
diff --git a/var/spack/packages/tau/package.py b/var/spack/repos/builtin/packages/tau/package.py
index 31492397d8..31492397d8 100644
--- a/var/spack/packages/tau/package.py
+++ b/var/spack/repos/builtin/packages/tau/package.py
diff --git a/var/spack/packages/tcl/package.py b/var/spack/repos/builtin/packages/tcl/package.py
index 529adf7788..529adf7788 100644
--- a/var/spack/packages/tcl/package.py
+++ b/var/spack/repos/builtin/packages/tcl/package.py
diff --git a/var/spack/packages/texinfo/package.py b/var/spack/repos/builtin/packages/texinfo/package.py
index 1b22c72e72..a83c10c0c1 100644
--- a/var/spack/packages/texinfo/package.py
+++ b/var/spack/repos/builtin/packages/texinfo/package.py
@@ -6,7 +6,7 @@
 # Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
 # LLNL-CODE-647188
 #
-# For details, see https://scalability-llnl.github.io/spack
+# For details, see https://llnl.github.io/spack
 # Please also see the LICENSE file for our notice and the LGPL.
 #
 # This program is free software; you can redistribute it and/or modify
diff --git a/var/spack/packages/the_silver_searcher/package.py b/var/spack/repos/builtin/packages/the_silver_searcher/package.py
index e4020b6766..e4020b6766 100644
--- a/var/spack/packages/the_silver_searcher/package.py
+++ b/var/spack/repos/builtin/packages/the_silver_searcher/package.py
diff --git a/var/spack/packages/thrift/package.py b/var/spack/repos/builtin/packages/thrift/package.py
index 0e15052f64..0e15052f64 100644
--- a/var/spack/packages/thrift/package.py
+++ b/var/spack/repos/builtin/packages/thrift/package.py
diff --git a/var/spack/packages/tk/package.py b/var/spack/repos/builtin/packages/tk/package.py
index 96736f6f95..96736f6f95 100644
--- a/var/spack/packages/tk/package.py
+++ b/var/spack/repos/builtin/packages/tk/package.py
diff --git a/var/spack/packages/tmux/package.py b/var/spack/repos/builtin/packages/tmux/package.py
index 23d36db427..23d36db427 100644
--- a/var/spack/packages/tmux/package.py
+++ b/var/spack/repos/builtin/packages/tmux/package.py
diff --git a/var/spack/packages/tmuxinator/package.py b/var/spack/repos/builtin/packages/tmuxinator/package.py
index 77ae063e5d..77ae063e5d 100644
--- a/var/spack/packages/tmuxinator/package.py
+++ b/var/spack/repos/builtin/packages/tmuxinator/package.py
diff --git a/var/spack/packages/trilinos/package.py b/var/spack/repos/builtin/packages/trilinos/package.py
index 7c43f796a4..7c43f796a4 100644
--- a/var/spack/packages/trilinos/package.py
+++ b/var/spack/repos/builtin/packages/trilinos/package.py
diff --git a/var/spack/packages/uncrustify/package.py b/var/spack/repos/builtin/packages/uncrustify/package.py
index d3f2d1b473..d3f2d1b473 100644
--- a/var/spack/packages/uncrustify/package.py
+++ b/var/spack/repos/builtin/packages/uncrustify/package.py
diff --git a/var/spack/packages/util-linux/package.py b/var/spack/repos/builtin/packages/util-linux/package.py
index cb7ceabf57..cb7ceabf57 100644
--- a/var/spack/packages/util-linux/package.py
+++ b/var/spack/repos/builtin/packages/util-linux/package.py
diff --git a/var/spack/packages/valgrind/package.py b/var/spack/repos/builtin/packages/valgrind/package.py
index 0b030d73e9..0b030d73e9 100644
--- a/var/spack/packages/valgrind/package.py
+++ b/var/spack/repos/builtin/packages/valgrind/package.py
diff --git a/var/spack/packages/vim/package.py b/var/spack/repos/builtin/packages/vim/package.py
index 4099b3257f..4099b3257f 100644
--- a/var/spack/packages/vim/package.py
+++ b/var/spack/repos/builtin/packages/vim/package.py
diff --git a/var/spack/packages/vtk/package.py b/var/spack/repos/builtin/packages/vtk/package.py
index 4a27a8fedb..4a27a8fedb 100644
--- a/var/spack/packages/vtk/package.py
+++ b/var/spack/repos/builtin/packages/vtk/package.py
diff --git a/var/spack/packages/wget/package.py b/var/spack/repos/builtin/packages/wget/package.py
index 55728b0515..55728b0515 100644
--- a/var/spack/packages/wget/package.py
+++ b/var/spack/repos/builtin/packages/wget/package.py
diff --git a/var/spack/packages/wx/package.py b/var/spack/repos/builtin/packages/wx/package.py
index 206fde7775..206fde7775 100644
--- a/var/spack/packages/wx/package.py
+++ b/var/spack/repos/builtin/packages/wx/package.py
diff --git a/var/spack/packages/wxpropgrid/package.py b/var/spack/repos/builtin/packages/wxpropgrid/package.py
index 790cead517..790cead517 100644
--- a/var/spack/packages/wxpropgrid/package.py
+++ b/var/spack/repos/builtin/packages/wxpropgrid/package.py
diff --git a/var/spack/packages/xcb-proto/package.py b/var/spack/repos/builtin/packages/xcb-proto/package.py
index 17a94bd892..17a94bd892 100644
--- a/var/spack/packages/xcb-proto/package.py
+++ b/var/spack/repos/builtin/packages/xcb-proto/package.py
diff --git a/var/spack/packages/xerces-c/package.py b/var/spack/repos/builtin/packages/xerces-c/package.py
index b59ab178ae..b59ab178ae 100644
--- a/var/spack/packages/xerces-c/package.py
+++ b/var/spack/repos/builtin/packages/xerces-c/package.py
diff --git a/var/spack/packages/xz/package.py b/var/spack/repos/builtin/packages/xz/package.py
index ba6c9733a7..ba6c9733a7 100644
--- a/var/spack/packages/xz/package.py
+++ b/var/spack/repos/builtin/packages/xz/package.py
diff --git a/var/spack/packages/yasm/package.py b/var/spack/repos/builtin/packages/yasm/package.py
index d3a695b16d..d3a695b16d 100644
--- a/var/spack/packages/yasm/package.py
+++ b/var/spack/repos/builtin/packages/yasm/package.py
diff --git a/var/spack/packages/zeromq/package.py b/var/spack/repos/builtin/packages/zeromq/package.py
index b5a1e3d4cd..b5a1e3d4cd 100644
--- a/var/spack/packages/zeromq/package.py
+++ b/var/spack/repos/builtin/packages/zeromq/package.py
diff --git a/var/spack/packages/zlib/package.py b/var/spack/repos/builtin/packages/zlib/package.py
index 2770f781ac..2770f781ac 100644
--- a/var/spack/packages/zlib/package.py
+++ b/var/spack/repos/builtin/packages/zlib/package.py
diff --git a/var/spack/packages/zsh/package.py b/var/spack/repos/builtin/packages/zsh/package.py
index 06665f0c83..06665f0c83 100644
--- a/var/spack/packages/zsh/package.py
+++ b/var/spack/repos/builtin/packages/zsh/package.py
diff --git a/var/spack/repos/builtin/repo.yaml b/var/spack/repos/builtin/repo.yaml
new file mode 100644
index 0000000000..54b282db6b
--- /dev/null
+++ b/var/spack/repos/builtin/repo.yaml
@@ -0,0 +1,2 @@
+repo:
+  namespace: builtin