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-rw-r--r--var/spack/packages/activeharmony/package.py15
-rw-r--r--var/spack/packages/binutils/package.py14
-rw-r--r--var/spack/packages/bzip2/package.py4
-rw-r--r--var/spack/packages/gcc/package.py2
-rw-r--r--var/spack/packages/glm/package.py19
-rw-r--r--var/spack/packages/hdf5/package.py3
-rw-r--r--var/spack/packages/libxcb/package.py2
-rw-r--r--var/spack/packages/matio/package.py15
-rw-r--r--var/spack/packages/mpich/package.py9
-rw-r--r--var/spack/packages/ncdu/package.py28
-rw-r--r--var/spack/packages/netcdf/netcdf-4.3.3-mpi.patch25
-rw-r--r--var/spack/packages/netcdf/package.py29
-rw-r--r--var/spack/packages/openmpi/package.py10
-rw-r--r--var/spack/packages/scr/package.py6
-rw-r--r--var/spack/packages/swig/package.py2
-rw-r--r--var/spack/packages/trilinos/package.py50
16 files changed, 206 insertions, 27 deletions
diff --git a/var/spack/packages/activeharmony/package.py b/var/spack/packages/activeharmony/package.py
new file mode 100644
index 0000000000..45dcc7c0e8
--- /dev/null
+++ b/var/spack/packages/activeharmony/package.py
@@ -0,0 +1,15 @@
+from spack import *
+
+class Activeharmony(Package):
+ """Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application)."""
+ homepage = "http://www.dyninst.org/harmony"
+ url = "http://www.dyninst.org/sites/default/files/downloads/harmony/ah-4.5.tar.gz"
+
+ version('4.5', 'caee5b864716d376e2c25d739251b2a9')
+
+ def install(self, spec, prefix):
+ make("CFLAGS=-O3")
+ make("install", 'PREFIX=%s' % prefix)
+
+from spack import *
+
diff --git a/var/spack/packages/binutils/package.py b/var/spack/packages/binutils/package.py
index 5a3059bbcf..0c33bf0426 100644
--- a/var/spack/packages/binutils/package.py
+++ b/var/spack/packages/binutils/package.py
@@ -10,8 +10,20 @@ class Binutils(Package):
version('2.23.2', '4f8fa651e35ef262edc01d60fb45702e')
version('2.20.1', '2b9dc8f2b7dbd5ec5992c6e29de0b764')
+ variant('libiberty', default=False, description='Also install libiberty.')
+
def install(self, spec, prefix):
- configure("--prefix=%s" % prefix)
+ configure_args = [
+ '--prefix=%s' % prefix,
+ '--disable-dependency-tracking',
+ '--enable-interwork',
+ '--enable-multilib',
+ '--enable-64-bit-bfd',
+ '--enable-targets=all']
+
+ if '+libiberty' in spec:
+ configure_args.append('--enable-install-libiberty')
+ configure(*configure_args)
make()
make("install")
diff --git a/var/spack/packages/bzip2/package.py b/var/spack/packages/bzip2/package.py
index fbd5869a53..d88336664d 100644
--- a/var/spack/packages/bzip2/package.py
+++ b/var/spack/packages/bzip2/package.py
@@ -22,8 +22,10 @@ class Bzip2(Package):
bzip2_exe = join_path(prefix.bin, 'bzip2')
install('bzip2-shared', bzip2_exe)
- for libfile in glob('libbz2.so*'):
+ for i, libfile in enumerate(glob('libbz2.so*')):
install(libfile, prefix.lib)
+ if i == 0:
+ symlink(join_path(prefix.lib, libfile), join_path(prefix.lib, 'libbz2.so'))
bunzip2 = join_path(prefix.bin, 'bunzip2')
remove(bunzip2)
diff --git a/var/spack/packages/gcc/package.py b/var/spack/packages/gcc/package.py
index 5e3d1a3efa..2fc6794b70 100644
--- a/var/spack/packages/gcc/package.py
+++ b/var/spack/packages/gcc/package.py
@@ -47,7 +47,7 @@ class Gcc(Package):
depends_on("gmp")
depends_on("mpc") # when @4.5:
depends_on("libelf")
- depends_on("binutils")
+ depends_on("binutils~libiberty")
# Save these until we can do optional deps.
#depends_on("isl")
diff --git a/var/spack/packages/glm/package.py b/var/spack/packages/glm/package.py
new file mode 100644
index 0000000000..d00c301b4c
--- /dev/null
+++ b/var/spack/packages/glm/package.py
@@ -0,0 +1,19 @@
+from spack import *
+
+
+class Glm(Package):
+ """
+ OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on
+ the OpenGL Shading Language (GLSL) specification.
+ """
+
+ homepage = "https://github.com/g-truc/glm"
+ url = "https://github.com/g-truc/glm/archive/0.9.7.1.tar.gz"
+
+ version('0.9.7.1', '61af6639cdf652d1cdd7117190afced8')
+
+ def install(self, spec, prefix):
+ with working_dir('spack-build', create=True):
+ cmake('..', *std_cmake_args)
+ make()
+ make("install")
diff --git a/var/spack/packages/hdf5/package.py b/var/spack/packages/hdf5/package.py
index 992dd8ec70..15e0ef9338 100644
--- a/var/spack/packages/hdf5/package.py
+++ b/var/spack/packages/hdf5/package.py
@@ -10,7 +10,8 @@ class Hdf5(Package):
url = "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.13/src/hdf5-1.8.13.tar.gz"
list_url = "http://www.hdfgroup.org/ftp/HDF5/releases"
list_depth = 3
-
+
+ version('1.8.15', '03cccb5b33dbe975fdcd8ae9dc021f24')
version('1.8.13', 'c03426e9e77d7766944654280b467289')
depends_on("mpi")
diff --git a/var/spack/packages/libxcb/package.py b/var/spack/packages/libxcb/package.py
index 521cd0d475..16a5525c0d 100644
--- a/var/spack/packages/libxcb/package.py
+++ b/var/spack/packages/libxcb/package.py
@@ -10,7 +10,7 @@ class Libxcb(Package):
url = "http://xcb.freedesktop.org/dist/libxcb-1.11.tar.gz"
version('1.11', '1698dd837d7e6e94d029dbe8b3a82deb')
-
+ version('1.11.1', '118623c15a96b08622603a71d8789bf3')
depends_on("python")
depends_on("xcb-proto")
diff --git a/var/spack/packages/matio/package.py b/var/spack/packages/matio/package.py
new file mode 100644
index 0000000000..12cfb80926
--- /dev/null
+++ b/var/spack/packages/matio/package.py
@@ -0,0 +1,15 @@
+from spack import *
+
+
+class Matio(Package):
+ """matio is an C library for reading and writing Matlab MAT files"""
+ homepage = "http://sourceforge.net/projects/matio/"
+ url = "http://downloads.sourceforge.net/project/matio/matio/1.5.2/matio-1.5.2.tar.gz"
+
+ version('1.5.2', '85b007b99916c63791f28398f6a4c6f1')
+
+ def install(self, spec, prefix):
+ configure('--prefix=%s' % prefix)
+
+ make()
+ make("install")
diff --git a/var/spack/packages/mpich/package.py b/var/spack/packages/mpich/package.py
index b6b2dfde21..d48bf878f6 100644
--- a/var/spack/packages/mpich/package.py
+++ b/var/spack/packages/mpich/package.py
@@ -33,10 +33,15 @@ class Mpich(Package):
list_url = "http://www.mpich.org/static/downloads/"
list_depth = 2
+ version('3.1.4', '2ab544607986486562e076b83937bba2')
+ version('3.1.3', '93cb17f91ac758cbf9174ecb03563778')
+ version('3.1.2', '7fbf4b81dcb74b07ae85939d1ceee7f1')
+ version('3.1.1', '40dc408b1e03cc36d80209baaa2d32b7')
+ version('3.1', '5643dd176499bfb7d25079aaff25f2ec')
version('3.0.4', '9c5d5d4fe1e17dd12153f40bc5b6dbc0')
- provides('mpi@:3', when='@3:')
- provides('mpi@:1', when='@1:')
+ provides('mpi@:3.0', when='@3:')
+ provides('mpi@:1.3', when='@1:')
def setup_dependent_environment(self, module, spec, dep_spec):
"""For dependencies, make mpicc's use spack wrapper."""
diff --git a/var/spack/packages/ncdu/package.py b/var/spack/packages/ncdu/package.py
new file mode 100644
index 0000000000..234f9730d6
--- /dev/null
+++ b/var/spack/packages/ncdu/package.py
@@ -0,0 +1,28 @@
+from spack import *
+
+class Ncdu(Package):
+ """
+ Ncdu is a disk usage analyzer with an ncurses interface. It is designed
+ to find space hogs on a remote server where you don't have an entire
+ gaphical setup available, but it is a useful tool even on regular desktop
+ systems. Ncdu aims to be fast, simple and easy to use, and should be able
+ to run in any minimal POSIX-like environment with ncurses installed.
+ """
+
+ homepage = "http://dev.yorhel.nl/ncdu"
+ url = "http://dev.yorhel.nl/download/ncdu-1.11.tar.gz"
+
+ version('1.11', '9e44240a5356b029f05f0e70a63c4d12')
+ version('1.10', '7535decc8d54eca811493e82d4bfab2d')
+ version('1.9' , '93258079db897d28bb8890e2db89b1fb')
+ version('1.8' , '94d7a821f8a0d7ba8ef3dd926226f7d5')
+ version('1.7' , '172047c29d232724cc62e773e82e592a')
+
+ depends_on("ncurses")
+
+ def install(self, spec, prefix):
+ configure('--prefix=%s' % prefix,
+ '--with-ncurses=%s' % spec['ncurses'])
+
+ make()
+ make("install")
diff --git a/var/spack/packages/netcdf/netcdf-4.3.3-mpi.patch b/var/spack/packages/netcdf/netcdf-4.3.3-mpi.patch
new file mode 100644
index 0000000000..46dda5fc9d
--- /dev/null
+++ b/var/spack/packages/netcdf/netcdf-4.3.3-mpi.patch
@@ -0,0 +1,25 @@
+diff -Nur netcdf-4.3.3/CMakeLists.txt netcdf-4.3.3.mpi/CMakeLists.txt
+--- netcdf-4.3.3/CMakeLists.txt 2015-02-12 16:44:35.000000000 -0500
++++ netcdf-4.3.3.mpi/CMakeLists.txt 2015-10-14 16:44:41.176300658 -0400
+@@ -753,6 +753,7 @@
+ SET(USE_PARALLEL OFF CACHE BOOL "")
+ MESSAGE(STATUS "Cannot find HDF5 library built with parallel support. Disabling parallel build.")
+ ELSE()
++ FIND_PACKAGE(MPI REQUIRED)
+ SET(USE_PARALLEL ON CACHE BOOL "")
+ SET(STATUS_PARALLEL "ON")
+ ENDIF()
+diff -Nur netcdf-4.3.3/liblib/CMakeLists.txt netcdf-4.3.3.mpi/liblib/CMakeLists.txt
+--- netcdf-4.3.3/liblib/CMakeLists.txt 2015-02-12 16:44:35.000000000 -0500
++++ netcdf-4.3.3.mpi/liblib/CMakeLists.txt 2015-10-14 16:44:57.757793634 -0400
+@@ -71,6 +71,10 @@
+ SET(TLL_LIBS ${TLL_LIBS} ${CURL_LIBRARY})
+ ENDIF()
+
++IF(USE_PARALLEL)
++ SET(TLL_LIBS ${TLL_LIBS} ${MPI_C_LIBRARIES})
++ENDIF()
++
+ IF(USE_HDF4)
+ SET(TLL_LIBS ${TLL_LIBS} ${HDF4_LIBRARIES})
+ ENDIF()
diff --git a/var/spack/packages/netcdf/package.py b/var/spack/packages/netcdf/package.py
index 34284ea725..e1e0d836c6 100644
--- a/var/spack/packages/netcdf/package.py
+++ b/var/spack/packages/netcdf/package.py
@@ -1,28 +1,27 @@
from spack import *
class Netcdf(Package):
- """NetCDF is a set of software libraries and self-describing, machine-independent
- data formats that support the creation, access, and sharing of array-oriented
- scientific data."""
+ """NetCDF is a set of software libraries and self-describing, machine-independent
+ data formats that support the creation, access, and sharing of array-oriented
+ scientific data."""
homepage = "http://www.unidata.ucar.edu/software/netcdf/"
url = "ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.3.3.tar.gz"
version('4.3.3', '5fbd0e108a54bd82cb5702a73f56d2ae')
+ patch('netcdf-4.3.3-mpi.patch')
+
# Dependencies:
- # >HDF5
+ # >HDF5
depends_on("hdf5")
- def install(self, spec, prefix):
- configure(
- "--prefix=%s" % prefix,
- "--disable-dap", # Disable DAP.
- "--disable-shared", # Don't build shared libraries (use static libs).
- "CPPFLAGS=-I%s/include" % spec['hdf5'].prefix, # Link HDF5's include dir.
- "LDFLAGS=-L%s/lib" % spec['hdf5'].prefix) # Link HDF5's lib dir.
-
- make("install")
+ def install(self, spec, prefix):
+ with working_dir('spack-build', create=True):
+ cmake('..',
+ "-DCMAKE_INSTALL_PREFIX:PATH=%s" % prefix,
+ "-DENABLE_DAP:BOOL=OFF", # Disable DAP.
+ "-DBUILD_SHARED_LIBS:BOOL=OFF") # Don't build shared libraries (use static libs).
- # Check the newly installed netcdf package. Currently disabled.
- # make("check")
+ make()
+ make("install")
diff --git a/var/spack/packages/openmpi/package.py b/var/spack/packages/openmpi/package.py
index 7e84cbaf65..f9d0034878 100644
--- a/var/spack/packages/openmpi/package.py
+++ b/var/spack/packages/openmpi/package.py
@@ -11,15 +11,19 @@ class Openmpi(Package):
homepage = "http://www.open-mpi.org"
- version('1.8.2', 'ab538ed8e328079d566fc797792e016e',
- url='http://www.open-mpi.org/software/ompi/v1.8/downloads/openmpi-1.8.2.tar.gz')
+ version('1.10.0', '280cf952de68369cebaca886c5ce0304',
+ url = "http://www.open-mpi.org/software/ompi/v1.10/downloads/openmpi-1.10.0.tar.bz2")
+ version('1.8.8', '0dab8e602372da1425e9242ae37faf8c',
+ url = 'http://www.open-mpi.org/software/ompi/v1.8/downloads/openmpi-1.8.8.tar.bz2')
version('1.6.5', '03aed2a4aa4d0b27196962a2a65fc475',
url = "http://www.open-mpi.org/software/ompi/v1.6/downloads/openmpi-1.6.5.tar.bz2")
patch('ad_lustre_rwcontig_open_source.patch', when="@1.6.5")
patch('llnl-platforms.patch', when="@1.6.5")
- provides('mpi@:2')
+ provides('mpi@:2.2', when='@1.6.5') # Open MPI 1.6.5 supports MPI-2.2
+ provides('mpi@:3.0', when='@1.8.8') # Open MPI 1.8.8 supports MPI-3.0
+ provides('mpi@:3.0', when='@1.10.0') # Open MPI 1.10.0 supports MPI-3.0
def install(self, spec, prefix):
config_args = ["--prefix=%s" % prefix]
diff --git a/var/spack/packages/scr/package.py b/var/spack/packages/scr/package.py
index 74b75a8742..9fb758f072 100644
--- a/var/spack/packages/scr/package.py
+++ b/var/spack/packages/scr/package.py
@@ -28,12 +28,14 @@ class Scr(Package):
"""SCR caches checkpoint data in storage on the compute nodes of a
Linux cluster to provide a fast, scalable checkpoint/restart
capability for MPI codes"""
+
homepage = "https://computation.llnl.gov/project/scr/"
- url = "http://downloads.sourceforge.net/project/scalablecr/releases/scr-1.1-7.tar.gz"
depends_on("mpi")
+# depends_on("dtcmp")
- version('1.1-7', 'a5930e9ab27d1b7049447c2fd7734ebd')
+ version('1.1-7', 'a5930e9ab27d1b7049447c2fd7734ebd', url='http://downloads.sourceforge.net/project/scalablecr/releases/scr-1.1-7.tar.gz')
+ version('1.1.8', '6a0f11ad18e27fcfc00a271ff587b06e', url='https://github.com/hpc/scr/releases/download/v1.1.8/scr-1.1.8.tar.gz')
def install(self, spec, prefix):
configure("--prefix=" + prefix,
diff --git a/var/spack/packages/swig/package.py b/var/spack/packages/swig/package.py
index d7a3d815b9..ee536d7063 100644
--- a/var/spack/packages/swig/package.py
+++ b/var/spack/packages/swig/package.py
@@ -38,6 +38,8 @@ class Swig(Package):
version('3.0.2', '62f9b0d010cef36a13a010dc530d0d41')
+ depends_on('pcre')
+
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
diff --git a/var/spack/packages/trilinos/package.py b/var/spack/packages/trilinos/package.py
new file mode 100644
index 0000000000..7c43f796a4
--- /dev/null
+++ b/var/spack/packages/trilinos/package.py
@@ -0,0 +1,50 @@
+from spack import *
+
+
+class Trilinos(Package):
+ """
+ The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented
+ software framework for the solution of large-scale, complex multi-physics engineering and scientific problems.
+ A unique design feature of Trilinos is its focus on packages.
+ """
+ homepage = "https://trilinos.org/"
+ url = "http://trilinos.csbsju.edu/download/files/trilinos-12.2.1-Source.tar.gz"
+
+ version('12.2.1', '6161926ea247863c690e927687f83be9')
+ version('12.0.1', 'bd99741d047471e127b8296b2ec08017')
+ version('11.14.3', '2f4f83f8333e4233c57d0f01c4b57426')
+ version('11.14.2', 'a43590cf896c677890d75bfe75bc6254')
+ version('11.14.1', '40febc57f76668be8b6a77b7607bb67f')
+
+ variant('mpi', default=True, description='Add a dependency on MPI and enables MPI dependent packages')
+
+ # Everything should be compiled with -fpic
+ depends_on('blas')
+ depends_on('lapack')
+ depends_on('boost')
+ depends_on('netcdf')
+ depends_on('matio')
+ depends_on('glm')
+ depends_on('swig')
+ depends_on('mpi', when='+mpi')
+
+ def install(self, spec, prefix):
+
+ options = [
+ '-DTrilinos_ENABLE_ALL_PACKAGES:BOOL=ON',
+ '-DTrilinos_ENABLE_TESTS:BOOL=OFF',
+ '-DTrilinos_ENABLE_EXAMPLES:BOOL=OFF',
+ '-DBUILD_SHARED_LIBS:BOOL=ON',
+ '-DBLAS_LIBRARY_DIRS:PATH=%s' % spec['blas'].prefix,
+ '-DLAPACK_LIBRARY_DIRS:PATH=%s' % spec['lapack'].prefix
+ ]
+ if '+mpi' in spec:
+ mpi_options = ['-DTPL_ENABLE_MPI:BOOL=ON']
+ options.extend(mpi_options)
+
+ # -DCMAKE_INSTALL_PREFIX and all the likes...
+ options.extend(std_cmake_args)
+ with working_dir('spack-build', create=True):
+ cmake('..', *options)
+ make()
+ make('install')
generated by cgit v1.2.3-60-g2f50 (git 2.42.0) at 2024-07-08 06:11:38 +0000