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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-htseq/package.py | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-htseq/package.py b/var/spack/repos/builtin/packages/py-htseq/package.py new file mode 100644 index 0000000000..8cbab45bb5 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-htseq/package.py @@ -0,0 +1,42 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyHtseq(PythonPackage): + """HTSeq is a Python package that provides infrastructure to process + data from high-throughput sequencing assays.""" + + homepage = "http://htseq.readthedocs.io/en/release_0.9.1/overview.html" + url = "https://github.com/simon-anders/htseq/archive/release_0.9.1.tar.gz" + + version('0.9.1', '269e7de5d39fc31f609cccd4a4740e61') + + depends_on('py-setuptools', type='build') + depends_on('py-numpy', type=('build', 'run')) + depends_on('py-pysam', type=('build', 'run')) + depends_on('py-matplotlib', type=('build', 'run')) + depends_on('py-cython', type=('build', 'run')) + depends_on('swig', type=('build', 'run')) |