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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-snpstats/package.py | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-snpstats/package.py b/var/spack/repos/builtin/packages/r-snpstats/package.py new file mode 100644 index 0000000000..2705246582 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-snpstats/package.py @@ -0,0 +1,29 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RSnpstats(RPackage): + """SnpMatrix and XSnpMatrix classes and methods. + + Classes and statistical methods for large SNP association studies. This + extends the earlier snpMatrix package, allowing for uncertainty in + genotypes.""" + + homepage = "https://bioconductor.org/packages/snpStats" + git = "https://git.bioconductor.org/packages/snpStats.git" + + version('1.34.0', commit='e31cdfb18a9e12d70d6a3e8e6fbf7cf8faa3ea5b') + version('1.32.0', commit='7c31158183b4e39da6dc30c7da275acc36b2e32f') + version('1.30.0', commit='0dc1e4246f015feaf2579d60268b10ab5149ce09') + version('1.28.0', commit='8df9f4188f720dfbb4f4f4ec255cd2e22f3f4426') + version('1.26.0', commit='7c9b3304073e0556d694a8531882b349822fdda8') + + depends_on('r@2.10.0:', type=('build', 'run')) + depends_on('r-survival', type=('build', 'run')) + depends_on('r-matrix', type=('build', 'run')) + depends_on('r-biocgenerics', type=('build', 'run')) + depends_on('r-zlibbioc', type=('build', 'run')) |