diff options
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-biobase/package.py | 38 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/r-biocgenerics/package.py | 16 |
2 files changed, 43 insertions, 11 deletions
diff --git a/var/spack/repos/builtin/packages/r-biobase/package.py b/var/spack/repos/builtin/packages/r-biobase/package.py new file mode 100644 index 0000000000..25d7ee79f4 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-biobase/package.py @@ -0,0 +1,38 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +# +from spack import * + + +class RBiobase(RPackage): + """Functions that are needed by many other packages + or which replace R functions.""" + + homepage = "https://www.bioconductor.org/packages/Biobase/" + url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/Biobase_2.36.2.tar.gz" + list_url = homepage + version('2.36.2', '8854eb70acabb07b55d2953fb1ecff31') + + depends_on('r-biocgenerics', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-biocgenerics/package.py b/var/spack/repos/builtin/packages/r-biocgenerics/package.py index 7b91598ca1..76ca3a43f5 100644 --- a/var/spack/repos/builtin/packages/r-biocgenerics/package.py +++ b/var/spack/repos/builtin/packages/r-biocgenerics/package.py @@ -22,19 +22,13 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## +# from spack import * class RBiocgenerics(RPackage): """S4 generic functions needed by many Bioconductor packages.""" - - homepage = 'https://bioconductor.org/packages/BiocGenerics/' - version('3.3', - git='https://github.com/Bioconductor-mirror/BiocGenerics.git', - branch='release-3.3') - version('3.2', - git='https://github.com/Bioconductor-mirror/BiocGenerics.git', - branch='release-3.2') - - depends_on('r@3.3.0:3.3.9', when='@3.3') - depends_on('r@3.2.0:3.2.9', when='@3.2') + homepage = "https://www.bioconductor.org/packages/BiocGenerics/" + url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.22.0.tar.gz" + list_url = homepage + version('0.22.0', 'ef910f2011c0652e1f5fdf3b14219490') |