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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/motioncor2/package.py | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/motioncor2/package.py b/var/spack/repos/builtin/packages/motioncor2/package.py new file mode 100644 index 0000000000..304e369d99 --- /dev/null +++ b/var/spack/repos/builtin/packages/motioncor2/package.py @@ -0,0 +1,50 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * +from glob import glob + + +class Motioncor2(Package): + """MotionCor2 is a multi-GPU program that corrects beam-induced sample + motion recorded on dose fractionated movie stacks. It implements a robust + iterative alignment algorithm that delivers precise measurement and + correction of both global and non-uniform local motions at + single pixel level, suitable for both single-particle and + tomographic images. MotionCor2 is sufficiently fast + to keep up with automated data collection.""" + + homepage = "http://msg.ucsf.edu/em/software" + url = "http://msg.ucsf.edu/MotionCor2/MotionCor2-1.0.2.tar.gz" + + version('1.0.2', 'f2f4c5b09170ab8480ca657f14cdba2b') + version('1.0.1', '73d94a80abdef9bf37bbc80fbbe76622') + version('1.0.0', '490f4df8daa9f5ddb9eec3962ba3ddf5') + + depends_on('cuda@8.0:8.99', type='run') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + for files in glob("MotionCor2_*"): + install(files, prefix.bin) |