diff options
Diffstat (limited to 'var')
3 files changed, 636 insertions, 14 deletions
diff --git a/var/spack/repos/builtin/packages/abinit/fix_for_fujitsu.patch b/var/spack/repos/builtin/packages/abinit/fix_for_fujitsu.patch index bc179c7cd2..b27c7e90fe 100644 --- a/var/spack/repos/builtin/packages/abinit/fix_for_fujitsu.patch +++ b/var/spack/repos/builtin/packages/abinit/fix_for_fujitsu.patch @@ -350,3 +350,37 @@ diff -uprN spack-src.org/src/98_main/abinit.F90 spack-src/src/98_main/abinit.F90 codename='ABINIT'//repeat(' ',18) call herald(codename,abinit_version,ab_out) call herald(codename,abinit_version,std_out) +diff -ru spack-src.org/config/specs/corelibs.conf spack-src/config/specs/corelibs.conf +--- spack-src.org/config/specs/corelibs.conf 2021-10-14 11:14:26.000000000 +0900 ++++ spack-src/config/specs/corelibs.conf 2021-10-14 11:19:29.000000000 +0900 +@@ -242,7 +242,7 @@ + dependencies = gpu + + [68_rsprc] +-dependencies = bigdft ++dependencies = bigdft netcdf + + [69_wfdesc] + abirules = no +diff -ru spack-src.org/src/68_rsprc/Makefile.am spack-src/src/68_rsprc/Makefile.am +--- spack-src.org/src/68_rsprc/Makefile.am 2021-10-14 11:15:36.000000000 +0900 ++++ spack-src/src/68_rsprc/Makefile.am 2021-10-14 11:20:13.000000000 +0900 +@@ -36,6 +36,7 @@ + @src_53_ffts_incs@ \ + @src_incs_incs@ \ + @lib_bigdft_incs@ \ ++ @lib_netcdf_incs@ \ + @fallbacks_incs@ \ + @abi_extra_incs@ \ + @fc_mod_incs@ +diff -u spack-src/src/68_rsprc/Makefile.in.org spack-src/src/68_rsprc/Makefile.am +--- spack-src/src/68_rsprc/Makefile.in.org 2021-11-05 14:40:10.000000000 +0900 ++++ spack-src/src/68_rsprc/Makefile.in 2021-11-05 14:43:22.000000000 +0900 +@@ -845,6 +845,7 @@ + @src_53_ffts_incs@ \ + @src_incs_incs@ \ + @lib_bigdft_incs@ \ ++ @lib_netcdf_incs@ \ + @fallbacks_incs@ \ + @abi_extra_incs@ \ + @fc_mod_incs@ diff --git a/var/spack/repos/builtin/packages/abinit/fix_for_fujitsu.v9.patch b/var/spack/repos/builtin/packages/abinit/fix_for_fujitsu.v9.patch new file mode 100644 index 0000000000..19e44dea11 --- /dev/null +++ b/var/spack/repos/builtin/packages/abinit/fix_for_fujitsu.v9.patch @@ -0,0 +1,569 @@ +diff --git a/configure b/configure +--- a/configure 2021-04-30 18:25:20.000000000 +0900 ++++ b/configure 2021-10-14 16:05:13.000000000 +0900 +@@ -13019,6 +13019,30 @@ + + # Do some sanity checking of the arguments + ++ cc_info_string=`${CC} --version 2>&1 | grep 'FCC'` ++ abi_result=$cc_info_string ++ if test "${abi_result}" = ""; then ++ abi_result="no" ++ cc_info_string="" ++ abi_cc_vendor="unknown" ++ abi_cc_version="unknown" ++ else ++ ++$as_echo "#define CC_FUJITSU 1" >>confdefs.h ++ ++ abi_cc_vendor="fujitsu" ++ abi_cc_version=`echo "${abi_result}" | sed -e 's/[^0-9]*\([0-9]\)/\1/' -e 's/ .*$//'` ++ if test "${abi_cc_version}" = "${abi_result}"; then ++ abi_cc_version="unknown" ++ fi ++ abi_result="yes" ++ fi ++ ++ fi ++ if test "${abi_cc_vendor}" = "unknown"; then ++ ++ # Do some sanity checking of the arguments ++ + cc_info_string=`${CC} --version 2>/dev/null | head -n 1` + abi_result=`echo "${cc_info_string}" | grep '[Cc]lang'` + if test "${abi_result}" = ""; then +@@ -13891,6 +13915,30 @@ + + # Do some sanity checking of the arguments + ++ cxx_info_string=`${CXX} --version 2>&1|grep 'FCC'` ++ abi_result=$cxx_info_string ++ if test "${abi_result}" = ""; then ++ abi_result="no" ++ cxx_info_string="" ++ abi_cxx_vendor="unknown" ++ abi_cxx_version="unknown" ++ else ++ ++$as_echo "#define CXX_FUJITSU 1" >>confdefs.h ++ ++ abi_cxx_vendor="fujitsu" ++ abi_cxx_version=`echo "${abi_result}" | sed -e 's/[^0-9]*\([0-9]\)/\1/' -e 's/ .*$//'` ++ if test "${abi_cxx_version}" = "${abi_result}"; then ++ abi_cxx_version="unknown" ++ fi ++ abi_result="yes" ++ fi ++ ++ fi ++ if test "${abi_cxx_vendor}" = "unknown"; then ++ ++ # Do some sanity checking of the arguments ++ + cxx_info_string=`${CXX} --version 2>/dev/null | head -n 1` + abi_result=`echo "${cxx_info_string}" | grep '[Cc]lang'` + if test "${abi_result}" = ""; then +@@ -14697,6 +14745,32 @@ + fi + echo "${fc_info_string}" >>"${tmp_fc_info_file}" + ++ if test "${abi_fc_vendor}" = "unknown"; then ++ ++ # Do some sanity checking of the arguments ++ ++ fc_info_string=`${FC} --version 2>&1 | head -n 1 ` ++ abi_result=`echo "${fc_info_string}" | grep 'FRT'` ++ if test "${abi_result}" = ""; then ++ abi_result="no" ++ fc_info_string="" ++ abi_fc_vendor="unknown" ++ abi_fc_version="unknown" ++ else ++ ++$as_echo "#define FC_FUJITSU 1" >>confdefs.h ++ ++ abi_fc_vendor="fujitsu" ++ abi_fc_version=`echo "${abi_result}" | sed -e 's/[^0-9]*\([0-9]\)/\1/' -e 's/ .*$//'` ++ if test "${abi_fc_version}" = "${abi_result}"; then ++ abi_fc_version="unknown" ++ fi ++ abi_result="yes" ++ fi ++ ++ fi ++ echo "${fc_info_string}" >>"${tmp_fc_info_file}" ++ + if test "${abi_fc_vendor}" = "unknown"; then + + # Do some sanity checking of the arguments +@@ -15049,6 +15123,7 @@ + # gfortran 4.3 outputs lines setting COLLECT_GCC_OPTIONS, COMPILER_PATH, + # LIBRARY_PATH; skip all such settings. + ac_fc_v_output=`eval $ac_link 5>&1 2>&1 | ++ sed -r "s/(\-L)(\/[^ ]+)+(\/bin\/\.\.\/lib64\/nofjobj)//g" | + sed '/^Driving:/d; /^Configured with:/d; + '"/^[_$as_cr_Letters][_$as_cr_alnum]*=/d"` + $as_echo "$ac_fc_v_output" >&5 +@@ -15157,6 +15232,7 @@ + # gfortran 4.3 outputs lines setting COLLECT_GCC_OPTIONS, COMPILER_PATH, + # LIBRARY_PATH; skip all such settings. + ac_fc_v_output=`eval $ac_link 5>&1 2>&1 | ++ sed -r "s/(\-L)(\/[^ ]+)+(\/bin\/\.\.\/lib64\/nofjobj)//g" | + sed '/^Driving:/d; /^Configured with:/d; + '"/^[_$as_cr_Letters][_$as_cr_alnum]*=/d"` + $as_echo "$ac_fc_v_output" >&5 +@@ -15982,6 +16058,13 @@ + openmp='-qopenmp' + CFLAGS_PIC='-fPIC' + ;; ++ fujitsu) ++ abi_cc_vendor_hnt="fujitsu" ++ abi_cc_version_hnt="default" ++ abi_sys_spec_hnt="default" ++ CFLAGS_PIC='-fPIC' ++ CFLAGS_HINTS='-fopenmp' ++ ;; + llvm) + abi_cc_vendor_hnt="llvm" + abi_cc_version_hnt="default" +@@ -16050,6 +16133,12 @@ + CXX_LDFLAGS_HINTS='-static-libgcc -static-intel' + CXXFLAGS_PIC='-fPIC' + ;; ++ fujitsu) ++ abi_cxx_vendor_hnt="fujitsu" ++ abi_cxx_version_hnt="default" ++ abi_sys_spec_hnt="default" ++ CXXFLAGS_PIC='-fPIC' ++ ;; + llvm) + abi_cxx_vendor_hnt="llvm" + abi_cxx_version_hnt="default" +@@ -16222,6 +16311,27 @@ + FCFLAGS_HINTS='-Mextend' + FC_LDFLAGS_HINTS='' + ;; ++ fujitsu) ++ abi_fc_vendor_hnt="fujitsu" ++ abi_sys_spec_hnt="default" ++ FCFLAGS_FIXEDFORM='-Fixed -X7' ++ FCFLAGS_FREEFORM='-Free -X9' ++ FCFLAGS_MODDIR='-M ../mods' ++ FCFLAGS_PIC='-KPIC' ++ FC_LDFLAGS_HINTS='' ++ case "${abi_fc_version}" in ++ 4.*) ++ abi_fc_version_hnt="4.x" ++ FCFLAGS_OPENMP='-Kopenmp' ++ FCFLAGS_HINTS='' ++ ;; ++ *) ++ abi_fc_version_hnt="default" ++ FCFLAGS_HINTS='-Am -Ee -Ep' ++ FCFLAGS_OPENMP='--openmp' ++ ;; ++ esac ++ ;; + esac # [case: abi_fc_vendor, indent: 0, item: True] + + { $as_echo "$as_me:${as_lineno-$LINENO}: result: ${abi_fc_vendor_hnt}/${abi_fc_version_hnt}/${abi_sys_spec_hnt}" >&5 +@@ -16878,6 +16988,25 @@ + ;; + esac # [case: abi_optim_flavor, indent: 2, item: True] + ;; ++ fujitsu) ++ abi_cc_vendor_opt="fujitsu" ++ abi_cc_version_opt="default" ++ abi_cpu_spec_opt="default" ++ case "${abi_optim_flavor}" in ++ safe) ++ abi_optim_flavor_opt="safe" ++ CFLAGS_OPTIM="-O2" ++ ;; ++ standard) ++ abi_optim_flavor_opt="standard" ++ CFLAGS_OPTIM="-O2" ++ ;; ++ aggressive) ++ abi_optim_flavor_opt="aggressive" ++ CFLAGS_OPTIM="-Kfast" ++ ;; ++ esac # [case: abi_optim_flavor, indent: 2, item: True] ++ ;; + llvm) + abi_cc_vendor_opt="llvm" + abi_cc_version_opt="default" +@@ -17031,6 +17160,25 @@ + ;; + esac # [case: abi_optim_flavor, indent: 2, item: True] + ;; ++ fujitsu) ++ abi_cxx_vendor_opt="fujitsu" ++ abi_cxx_version_opt="default" ++ abi_cpu_spec_opt="default" ++ case "${abi_optim_flavor}" in ++ safe) ++ abi_optim_flavor_opt="safe" ++ CXXFLAGS_OPTIM="-O2" ++ ;; ++ standard) ++ abi_optim_flavor_opt="standard" ++ CXXFLAGS_OPTIM="-O2" ++ ;; ++ aggressive) ++ abi_optim_flavor_opt="aggressive" ++ CXXFLAGS_OPTIM="-Kfast" ++ ;; ++ esac # [case: abi_optim_flavor, indent: 2, item: True] ++ ;; + llvm) + abi_cxx_vendor_opt="llvm" + abi_cxx_version_opt="default" +@@ -17302,6 +17450,46 @@ + ;; + esac # [case: abi_optim_flavor, indent: 2, item: True] + ;; ++ fujitsu) ++ abi_fc_vendor_opt="fujitsu" ++ abi_cpu_spec_opt="default" ++ case "${abi_fc_version}" in ++ 4.*) ++ abi_fc_version_opt="4.X" ++ case "${abi_optim_flavor}" in ++ safe) ++ abi_optim_flavor_opt="safe" ++ FCFLAGS_OPTIM="-O2 -Koptmsg=2 -Nlst=t" ++ ;; ++ standard) ++ abi_optim_flavor_opt="standard" ++ FCFLAGS_OPTIM="-O2 -Koptmsg=2 -Nlst=t" ++ ;; ++ aggressive) ++ abi_optim_flavor_opt="aggressive" ++ FCFLAGS_OPTIM="-Kfast -Koptmsg=2 -Nlst=t" ++ ;; ++ esac ++ ;; ++ *) ++ abi_fc_version_opt="default" ++ case "${abi_optim_flavor}" in ++ safe) ++ abi_optim_flavor_opt="safe" ++ FCFLAGS_OPTIM="-Of -X9 -Ps -Wv,-md" ++ ;; ++ standard) ++ abi_optim_flavor_opt="standard" ++ FCFLAGS_OPTIM="-Of -X9 -Ps -Wv,-md" ++ ;; ++ aggressive) ++ abi_optim_flavor_opt="aggressive" ++ FCFLAGS_OPTIM="-Of -X9 -Ps -Wv,-md" ++ ;; ++ esac ++ ;; ++ esac ++ ;; + esac # [case: abi_fc_vendor, indent: 0, item: True] + + { $as_echo "$as_me:${as_lineno-$LINENO}: result: ${abi_fc_vendor_opt}/${abi_fc_version_opt}/${abi_cpu_spec_opt}" >&5 +index 3174381..ac7118f 100644 +diff --git a/shared/common/src/10_defs/defs_basis.F90 b/shared/common/src/10_defs/defs_basis.F90 +--- a/shared/common/src/10_defs/defs_basis.F90 ++++ b/shared/common/src/10_defs/defs_basis.F90 +@@ -80,7 +80,7 @@ module defs_basis + ! do not trim input strings and use character(len=500) :: msg + + integer, parameter :: fnlen=264 ! maximum length of file name variables +- integer, parameter :: strlen=2000000 ! maximum length of input string ++ integer, parameter :: strlen=65000 ! maximum length of input string + + ! The input file used to run the code, set by parsefile. + ! It will be added to the netcdf files in ntck_open_create +diff --git a/shared/common/src/14_hidewrite/m_cppopts_dumper.F90 b/shared/common/src/14_hidewrite/m_cppopts_dumper.F90 +index 9bf19f4..79d94a9 100644 +--- a/shared/common/src/14_hidewrite/m_cppopts_dumper.F90 ++++ b/shared/common/src/14_hidewrite/m_cppopts_dumper.F90 +@@ -89,6 +88,16 @@ subroutine dump_cpp_options(my_unit) + msg = "" + end if + #endif ++#if defined CC_FUJITSU ++ write(tmp,"(1x,a25)") "CC_FUJITSU" ++ msg = trim(msg)//trim(tmp) ++ msg_index = msg_index + 1 ++ if ( mod(msg_index,3) == 0 ) then ++ msg = trim(msg)//ch10 ++ write(my_unit,'(a)') msg ++ msg = "" ++ end if ++#endif + #if defined CC_GNU + write(tmp,"(1x,a25)") "CC_GNU" + msg = trim(msg)//trim(tmp) +@@ -149,6 +158,16 @@ subroutine dump_cpp_options(my_unit) + msg = "" + end if + #endif ++#if defined CXX_FUJITSU ++ write(tmp,"(1x,a25)") "CXX_FUJITSU" ++ msg = trim(msg)//trim(tmp) ++ msg_index = msg_index + 1 ++ if ( mod(msg_index,3) == 0 ) then ++ msg = trim(msg)//ch10 ++ write(my_unit,'(a)') msg ++ msg = "" ++ end if ++#endif + #if defined CXX_GNU + write(tmp,"(1x,a25)") "CXX_GNU" + msg = trim(msg)//trim(tmp) +@@ -259,6 +278,16 @@ subroutine dump_cpp_options(my_unit) + msg = "" + end if + #endif ++#if defined FC_FUJITSU ++ write(tmp,"(1x,a25)") "FC_FUJITSU" ++ msg = trim(msg)//trim(tmp) ++ msg_index = msg_index + 1 ++ if ( mod(msg_index,3) == 0 ) then ++ msg = trim(msg)//ch10 ++ write(my_unit,'(a)') msg ++ msg = "" ++ end if ++#endif + #if defined FC_GNU + write(tmp,"(1x,a25)") "FC_GNU" + msg = trim(msg)//trim(tmp) +diff --git a/src/43_wvl_wrappers/m_wvl_denspot.F90 b/src/43_wvl_wrappers/m_wvl_denspot.F90 +index 18f8785..e06ac4a 100644 +--- a/src/43_wvl_wrappers/m_wvl_denspot.F90 ++++ b/src/43_wvl_wrappers/m_wvl_denspot.F90 +@@ -88,7 +88,7 @@ subroutine wvl_denspot_set(den,gth_params,ixc,natom,nsppol,rprimd,wvl,& + real(dp), intent(in) :: rprimd(3, 3) + real(dp), intent(in) :: wvl_frmult,wvl_crmult + real(dp), intent(inout) :: xred(3,natom) +- type(wvl_denspot_type), intent(out) :: den ++ type(wvl_denspot_type), intent(inout) :: den + type(wvl_internal_type),intent(in) :: wvl + type(pseudopotential_gth_type),intent(in)::gth_params + +diff --git a/src/43_wvl_wrappers/m_wvl_wfs.F90 b/src/43_wvl_wrappers/m_wvl_wfs.F90 +index 4643fff..a1307da 100644 +--- a/src/43_wvl_wrappers/m_wvl_wfs.F90 ++++ b/src/43_wvl_wrappers/m_wvl_wfs.F90 +@@ -96,7 +96,7 @@ subroutine wvl_wfs_set(alphadiis, spinmagntarget, kpt, me, natom, nband, nkpt, n + integer, intent(in) :: natom, nkpt, nsppol, nspinor, nband, nwfshist,me,nproc + real(dp), intent(in) :: spinmagntarget, wvl_crmult, wvl_frmult, alphadiis + type(pseudopotential_type),intent(in) :: psps +- type(wvl_wf_type),intent(out) :: wfs ++ type(wvl_wf_type),intent(inout) :: wfs + type(wvl_internal_type), intent(in) :: wvl + !arrays + real(dp), intent(in) :: kpt(3,nkpt) +diff --git a/src/52_fft_mpi_noabirule/m_fftw3.F90 b/src/52_fft_mpi_noabirule/m_fftw3.F90 +index bdeb0ce..8d4e0e3 100644 +--- a/src/52_fft_mpi_noabirule/m_fftw3.F90 ++++ b/src/52_fft_mpi_noabirule/m_fftw3.F90 +@@ -4191,7 +4191,7 @@ subroutine fftw3_mpiback_wf(cplexwf,ndat,n1,n2,n3,nd1,nd2,nd3proc,& + integer,intent(in) :: cplexwf,ndat,n1,n2,n3,nd1,nd2,nd3proc + integer,intent(in) :: max1,max2,max3,m1,m2,m3,md1,md2proc,md3,comm_fft + real(dp),intent(in) :: zf(2,md1,md3,md2proc,ndat) +- real(dp),intent(out) :: zr(2,nd1,nd2,nd3proc,ndat) ++ real(dp),intent(inout) :: zr(2,nd1,nd2,nd3proc,ndat) + + #ifdef HAVE_FFTW3 + !Local variables------------------------------- +@@ -4548,7 +4548,7 @@ subroutine fftw3_mpiforw_wf(cplexwf,ndat,n1,n2,n3,nd1,nd2,nd3proc,& + integer,intent(in) :: max1,max2,max3,m1,m2,m3,md1,md2proc,md3,comm_fft + !arrays + real(dp),intent(inout) :: zr(2,nd1,nd2,nd3proc,ndat) +- real(dp),intent(out) :: zf(2,md1,md3,md2proc,ndat) ++ real(dp),intent(inout) :: zf(2,md1,md3,md2proc,ndat) + + !Local variables------------------------------- + !scalars +@@ -4896,7 +4896,7 @@ subroutine fftw3_mpiback(cplex,ndat,n1,n2,n3,nd1,nd2,nd3,nd1eff,nd2proc,nd3proc, + ! real space input + integer,intent(in) :: cplex,ndat,n1,n2,n3,nd1,nd2,nd3,nd1eff,nd2proc,nd3proc,option,comm_fft + real(dp),intent(in) :: zf(2,nd1,nd3,nd2proc,ndat) +- real(dp),intent(out) :: zr(2,nd1eff,nd2,nd3proc,ndat) ++ real(dp),intent(inout) :: zr(2,nd1eff,nd2,nd3proc,ndat) + + !Local variables------------------------------- + !scalaras +@@ -5197,7 +5197,7 @@ subroutine fftw3_mpiforw(cplex,ndat,n1,n2,n3,nd1,nd2,nd3,nd1eff,nd2proc,nd3proc, + integer,intent(in) :: ndat,n1,n2,n3,nd1,nd2,nd3,nd1eff,nd2proc,nd3proc,option + !arrays + real(dp),intent(in) :: zr(2,nd1eff,nd2,nd3proc,ndat) +- real(dp),intent(out) :: zf(2,nd1,nd3,nd2proc,ndat) ++ real(dp),intent(inout) :: zf(2,nd1,nd3,nd2proc,ndat) + + !Local variables------------------------------- + !scalars +@@ -6379,7 +6379,7 @@ subroutine fftw3_mpiback_manywf(cplexwf,ndat,n1,n2,n3,nd1,nd2,nd3proc,& + integer,intent(in) :: cplexwf,ndat,n1,n2,n3,nd1,nd2,nd3proc + integer,intent(in) :: max1,max2,max3,m1,m2,m3,md1,md2proc,md3,comm_fft + real(dp),intent(in) :: zf(2,md1,md3,md2proc,ndat) +- real(dp),intent(out) :: zr(2,nd1,nd2,nd3proc,ndat) ++ real(dp),intent(inout) :: zr(2,nd1,nd2,nd3proc,ndat) + + #ifdef HAVE_FFTW3 + !Local variables------------------------------- +@@ -6733,7 +6733,7 @@ subroutine fftw3_mpiforw_manywf(cplexwf,ndat,n1,n2,n3,nd1,nd2,nd3proc,& + integer,intent(in) :: max1,max2,max3,m1,m2,m3,md1,md2proc,md3,comm_fft + !arrays + real(dp),intent(inout) :: zr(2,nd1,nd2,nd3proc,ndat) +- real(dp),intent(out) :: zf(2,md1,md3,md2proc,ndat) ++ real(dp),intent(inout) :: zf(2,md1,md3,md2proc,ndat) + + !Local variables------------------------------- + !scalars +diff --git a/src/62_poisson/m_psolver.F90 b/src/62_poisson/m_psolver.F90 +index 1f4a20a..b4ba3cf 100644 +--- a/src/62_poisson/m_psolver.F90 ++++ b/src/62_poisson/m_psolver.F90 +@@ -110,7 +110,7 @@ subroutine psolver_rhohxc(enhartr, enxc, envxc, icoulomb, ixc, & + integer,intent(in) :: usexcnhat,usepaw,xclevel + real(dp),intent(in) :: rprimd(3,3) + real(dp), intent(in) :: xc_denpos +- real(dp), intent(out) :: enxc, envxc, enhartr, vxcavg ++ real(dp), intent(inout) :: enxc, envxc, enhartr, vxcavg + type(mpi_type), intent(in) :: mpi_enreg + type(wvl_internal_type), intent(in) :: wvl + type(wvl_denspot_type), intent(inout) :: wvl_den +@@ -120,8 +120,8 @@ subroutine psolver_rhohxc(enhartr, enxc, envxc, icoulomb, ixc, & + real(dp),intent(in) :: xccc3d(n3xccc) + real(dp),intent(in) :: nhat(nfft,nspden*nhatdim) + real(dp),intent(inout) :: rhor(nfft, nspden) +- real(dp),intent(out) :: vhartr(nfft) +- real(dp),intent(out) :: vxc(nfft, nspden) ++ real(dp),intent(inout) :: vhartr(nfft) ++ real(dp),intent(inout) :: vxc(nfft, nspden) + + !Local variables------------------------------- + #if defined HAVE_BIGDFT +@@ -562,12 +562,12 @@ subroutine psolver_hartree(enhartr, hgrid, icoulomb, me, mpi_comm, nfft, ngfft, + !Arguments ------------------------------------ + !scalars + integer, intent(in) :: nfft, nspden, icoulomb, usewvl, mpi_comm, me, nproc, nscforder +- real(dp), intent(out) :: enhartr ++ real(dp), intent(inout) :: enhartr + !arrays + integer, intent(in) :: ngfft(3) + real(dp),intent(in) :: hgrid(3) + real(dp),intent(in) :: rhor(nfft,nspden) +- real(dp),intent(out) :: vhartr(nfft) ++ real(dp),intent(inout) :: vhartr(nfft) + + !Local variables------------------------------- + #if defined HAVE_BIGDFT +diff --git a/src/62_wvl_wfs/m_wvl_psi.F90 b/src/62_wvl_wfs/m_wvl_psi.F90 +index 7eb4b9c..bcb3b08 100644 +--- a/src/62_wvl_wfs/m_wvl_psi.F90 ++++ b/src/62_wvl_wfs/m_wvl_psi.F90 +@@ -234,16 +234,16 @@ subroutine wvl_psitohpsi(alphamix,eexctX, eexcu, ehart, ekin_sum, epot_sum, epro + !scalars + integer, intent(in) :: me, nproc, itrp, iter, iscf, natom, nfft, nspden + real(dp), intent(in) :: alphamix +- real(dp), intent(out) :: rpnrm ++ real(dp), intent(inout) :: rpnrm + logical, intent(in) :: scf + logical, intent(in) :: wvlbigdft + type(wvl_data), intent(inout) :: wvl + real(dp), intent(inout) :: eexctX,eSIC_DC,ehart,eexcu,vexcu, ekin_sum, epot_sum, eproj_sum +- real(dp), dimension(6), intent(out) :: xcstr ++ real(dp), dimension(6), intent(inout) :: xcstr + real(dp), intent(inout) :: xcart(3, natom) + !arrays +- real(dp),intent(out), optional :: vxc(nfft,nspden) +- real(dp),intent(out), optional :: vtrial(nfft,nspden) ++ real(dp),intent(inout), optional :: vxc(nfft,nspden) ++ real(dp),intent(inout), optional :: vtrial(nfft,nspden) + + !Local variables------------------------------- + !scalars +@@ -454,7 +454,7 @@ subroutine wvl_tail_corrections(dtset, energies, etotal, mpi_enreg, psps, wvl, x + + !Arguments ------------------------------------ + !scalars +- real(dp),intent(out) :: etotal ++ real(dp),intent(inout) :: etotal + type(MPI_type),intent(in) :: mpi_enreg + type(dataset_type),intent(in) :: dtset + type(energies_type),intent(inout) :: energies +diff --git a/src/67_common/m_mklocl_realspace.F90 b/src/67_common/m_mklocl_realspace.F90 +index 423dd4d..ba43c6e 100644 +--- a/src/67_common/m_mklocl_realspace.F90 ++++ b/src/67_common/m_mklocl_realspace.F90 +@@ -1622,7 +1622,7 @@ subroutine local_forces_wvl(iproc,natom,rxyz,hxh,hyh,hzh,n1,n2,n3,n3pi,i3s,n1i,n + !arrays + real(dp),intent(in) :: rxyz(3,natom) + real(dp),dimension(*),intent(in) :: rho,pot +- real(dp),intent(out) :: floc(3,natom) ++ real(dp),intent(inout) :: floc(3,natom) + + !Local variables ------------------------- + #if defined HAVE_BIGDFT +diff --git a/src/67_common/mkcore_wvl.F90 b/src/67_common/mkcore_wvl.F90 +index fc58fbc..6960e64 100644 +--- a/src/67_common/mkcore_wvl.F90 ++++ b/src/67_common/mkcore_wvl.F90 +@@ -127,7 +127,7 @@ subroutine mkcore_wvl(atindx1,corstr,grxc,natom,nattyp,nfft,nspden,ntypat,n1xccc + integer,intent(in) :: atindx1(natom),nattyp(ntypat) + real(dp),intent(in) :: rprimd(3,3),xccc1d(n1xccc,6,ntypat),xcccrc(ntypat),xred(3,natom) + real(dp),intent(in),target :: vxc(nfft,nspden) +- real(dp),intent(out) :: corstr(6),grxc(3,natom) ++ real(dp),intent(inout) :: corstr(6),grxc(3,natom) + real(dp),intent(inout) :: xccc3d(n3xccc) + type(pawrad_type),intent(in) :: pawrad(:) + type(pawtab_type),intent(in) :: pawtab(:) +@@ -568,8 +568,8 @@ subroutine mkcore_wvl_old(atindx1,corstr,dyfrx2,geocode,grxc,h,natom,& + real(dp),intent(in) :: psppar(0:4,0:6,ntypat),rprimd(3,3) + real(dp),intent(in)::xred(3,natom) + real(dp),intent(in)::vxc(nfft,nspden) +- real(dp),intent(out)::xccc3d(n3xccc) +- real(dp),intent(out) :: corstr(6),dyfrx2(3,3,natom),grxc(3,natom) ++ real(dp),intent(inout)::xccc3d(n3xccc) ++ real(dp),intent(inout) :: corstr(6),dyfrx2(3,3,natom),grxc(3,natom) + type(pawtab_type),intent(in) :: pawtab(ntypat) + type(pawrad_type),intent(in) :: pawrad(ntypat) + +diff --git a/src/78_effpot/m_spmat_base.F90 b/src/78_effpot/m_spmat_base.F90 +index be4e8b9..0590a33 100644 +--- a/src/78_effpot/m_spmat_base.F90 ++++ b/src/78_effpot/m_spmat_base.F90 +@@ -113,7 +113,7 @@ contains + subroutine base_mat2d_t_mv(self, x, b) + class(base_mat2d_t), intent(in) :: self + real(dp), intent(in) :: x(self%ncol) +- real(dp), intent(out) :: b(self%nrow) ++ real(dp), intent(inout) :: b(self%nrow) + ABI_UNUSED_A(x) + ABI_UNUSED_A(b) + end subroutine base_mat2d_t_mv +diff --git a/src/78_effpot/m_spmat_csr.F90 b/src/78_effpot/m_spmat_csr.F90 +index 389abd3..d5904e7 100644 +--- a/src/78_effpot/m_spmat_csr.F90 ++++ b/src/78_effpot/m_spmat_csr.F90 +@@ -201,7 +201,7 @@ contains + subroutine CSR_mat_t_mv(self, x, b) + class(CSR_mat_t), intent(in):: self + real(dp), intent(in) :: x(self%ncol) +- real(dp), intent(out) :: b(self%nrow) ++ real(dp), intent(inout) :: b(self%nrow) + integer::irow, i1, i2, i + b(:)=0.0d0 + !$OMP PARALLEL DO private(i, i1, i2) +diff --git a/src/78_effpot/m_spmat_dense.F90 b/src/78_effpot/m_spmat_dense.F90 +index c861e47..a53b46f 100644 +--- a/src/78_effpot/m_spmat_dense.F90 ++++ b/src/78_effpot/m_spmat_dense.F90 +@@ -114,7 +114,7 @@ contains + subroutine dense_mat_t_mv(self, x, b) + class(dense_mat_t), intent(in) :: self + real(dp), intent(in) :: x(self%ncol) +- real(dp), intent(out) :: b(self%nrow) ++ real(dp), intent(inout) :: b(self%nrow) + call dgemv("N", self%nrow, self%ncol, 1.0d0,self%mat , 2, x, 1, 0.0d0, b, 1) + end subroutine dense_mat_t_mv + diff --git a/var/spack/repos/builtin/packages/abinit/package.py b/var/spack/repos/builtin/packages/abinit/package.py index ff6c4ff628..f489ee7809 100644 --- a/var/spack/repos/builtin/packages/abinit/package.py +++ b/var/spack/repos/builtin/packages/abinit/package.py @@ -30,6 +30,7 @@ class Abinit(AutotoolsPackage): homepage = 'https://www.abinit.org/' url = 'https://www.abinit.org/sites/default/files/packages/abinit-8.6.3.tar.gz' + version('9.6.1', sha256='b6a12760fd728eb4aacca431ae12150609565bedbaa89763f219fcd869f79ac6') version('9.4.2', sha256='d40886f5c8b138bb4aa1ca05da23388eb70a682790cfe5020ecce4db1b1a76bc') version('8.10.3', sha256='ed626424b4472b93256622fbb9c7645fa3ffb693d4b444b07d488771ea7eaa75') version('8.10.2', sha256='4ee2e0329497bf16a9b2719fe0536cc50c5d5a07c65e18edaf15ba02251cbb73') @@ -99,11 +100,12 @@ class Abinit(AutotoolsPackage): # need openmp threading for abinit+openmp # TODO: The logic here can be reversed with the new concretizer. Instead of # using `conflicts`, `depends_on` could be used instead. + for fftw in ['amdfftw', 'cray-fftw', 'fujitsu-fftw', 'fftw']: + conflicts('+openmp', when='^{0}~openmp'.format(fftw), + msg='Need to request {0} +openmp'.format(fftw)) + mkl_message = 'Need to set dependent variant to threads=openmp' conflicts('+openmp', - when='^fftw~openmp', - msg='Need to request fftw +openmp') - conflicts('+openmp', when='^intel-mkl threads=none', msg=mkl_message) conflicts('+openmp', @@ -113,13 +115,22 @@ class Abinit(AutotoolsPackage): when='^intel-parallel-studio +mkl threads=none', msg=mkl_message) + conflicts('+openmp', + when='^fujitsu-ssl2 ~parallel', + msg='Need to request fujitsu-ssl2 +parallel') + + conflicts('~openmp', + when='^fujitsu-ssl2 +parallel', + msg='Need to request fujitsu-ssl2 ~parallel') + patch('rm_march_settings.patch', when='@:8') patch('rm_march_settings_v9.patch', when='@9:') # Fix detection of Fujitsu compiler # Fix configure not to collect the option that causes an error # Fix intent(out) and unnecessary rewind to avoid compile error - patch('fix_for_fujitsu.patch', when='%fj') + patch('fix_for_fujitsu.patch', when='@:8 %fj') + patch('fix_for_fujitsu.v9.patch', when='@9: %fj') def configure_args(self): @@ -129,8 +140,12 @@ class Abinit(AutotoolsPackage): options += self.with_or_without('libxml2') oapp = options.append - oapp('--with-optim-flavor={0}' - .format(self.spec.variants['optimization-flavor'].value)) + if '@:8' in spec: + oapp('--enable-optim={0}' + .format(self.spec.variants['optimization-flavor'].value)) + else: + oapp('--with-optim-flavor={0}' + .format(self.spec.variants['optimization-flavor'].value)) if '+wannier90' in spec: if '@:8' in spec: @@ -184,6 +199,8 @@ class Abinit(AutotoolsPackage): linalg_flavor = 'mkl' elif '@9:' in spec and '^openblas' in spec: linalg_flavor = 'openblas' + elif '@9:' in spec and '^fujitsu-ssl2' in spec: + linalg_flavor = 'openblas' else: linalg_flavor = 'custom' @@ -201,7 +218,7 @@ class Abinit(AutotoolsPackage): if '^mkl' in spec: fftflavor = 'dfti' - elif '^fftw' in spec: + else: if '+openmp' in spec: fftflavor, fftlibs = 'fftw3-threads', '-lfftw3_omp -lfftw3 -lfftw3f' else: @@ -213,11 +230,11 @@ class Abinit(AutotoolsPackage): if '^mkl' in spec: oapp('--with-fft-incs={0}'.format(spec['fftw-api'].headers.cpp_flags)) oapp('--with-fft-libs={0}'.format(spec['fftw-api'].libs.ld_flags)) - elif '^fftw' in spec: + else: options.extend([ - '--with-fft-incs={0}'.format(spec['fftw'].headers.cpp_flags), + '--with-fft-incs={0}'.format(spec['fftw-api'].headers.cpp_flags), '--with-fft-libs=-L{0} {1}'.format( - spec['fftw'].prefix.lib, fftlibs), + spec['fftw-api'].prefix.lib, fftlibs), ]) else: if '^mkl' in spec: @@ -225,11 +242,11 @@ class Abinit(AutotoolsPackage): 'FFT_CPPFLAGS={0}'.format(spec['fftw-api'].headers.cpp_flags), 'FFT_LIBs={0}'.format(spec['fftw-api'].libs.ld_flags), ]) - elif '^fftw' in spec: + else: options.extend([ - 'FFTW3_CPPFLAGS={0}'.format(spec['fftw'].headers.cpp_flags), + 'FFTW3_CPPFLAGS={0}'.format(spec['fftw-api'].headers.cpp_flags), 'FFTW3_LIBS=-L{0} {1}'.format( - spec['fftw'].prefix.lib, fftlibs), + spec['fftw-api'].prefix.lib, fftlibs), ]) # LibXC library @@ -251,7 +268,9 @@ class Abinit(AutotoolsPackage): # Since version 8, Abinit started to use netcdf4 + hdf5 and we have # to link with the high level HDF5 library options.extend([ - '--with-netcdf-incs={0}'.format(netcdff.headers.cpp_flags), + '--with-netcdf-incs={0}'.format( + netcdfc.headers.cpp_flags + ' ' + + netcdff.headers.cpp_flags), '--with-netcdf-libs={0}'.format( netcdff.libs.ld_flags + ' ' + hdf5.libs.ld_flags ), |