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-rw-r--r--var/spack/repos/builtin/packages/armadillo/package.py67
-rw-r--r--var/spack/repos/builtin/packages/arpack/package.py40
-rw-r--r--var/spack/repos/builtin/packages/ferret/package.py103
-rw-r--r--var/spack/repos/builtin/packages/openblas/package.py7
-rw-r--r--var/spack/repos/builtin/packages/openmpi/package.py7
-rw-r--r--var/spack/repos/builtin/packages/superlu/package.py54
-rw-r--r--var/spack/repos/builtin/packages/tmux/package.py17
7 files changed, 274 insertions, 21 deletions
diff --git a/var/spack/repos/builtin/packages/armadillo/package.py b/var/spack/repos/builtin/packages/armadillo/package.py
new file mode 100644
index 0000000000..b3e5994e30
--- /dev/null
+++ b/var/spack/repos/builtin/packages/armadillo/package.py
@@ -0,0 +1,67 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Armadillo(Package):
+ """Armadillo is a high quality linear algebra library (matrix maths)
+ for the C++ language, aiming towards a good balance between speed and
+ ease of use."""
+
+ homepage = "http://arma.sourceforge.net/"
+ url = "http://sourceforge.net/projects/arma/files/armadillo-7.200.1.tar.xz"
+
+ version('7.200.1', 'ed86d6df0058979e107502e1fe3e469e')
+
+ variant('hdf5', default=False, description='Include HDF5 support')
+
+ depends_on('arpack')
+ depends_on('blas')
+ depends_on('lapack')
+ depends_on('superlu@5.2:')
+ depends_on('hdf5', when='+hdf5')
+
+ def install(self, spec, prefix):
+ cmake_args = [
+ # ARPACK support
+ '-DARPACK_LIBRARY={0}/libarpack.a'.format(
+ spec['arpack'].prefix.lib),
+ # BLAS support
+ '-DBLAS_LIBRARY={0}'.format(spec['blas'].blas_shared_lib),
+ # LAPACK support
+ '-DLAPACK_LIBRARY={0}'.format(spec['lapack'].lapack_shared_lib),
+ # SuperLU support
+ '-DSuperLU_INCLUDE_DIR={0}'.format(spec['superlu'].prefix.include),
+ '-DSuperLU_LIBRARY={0}/libsuperlu.a'.format(
+ spec['superlu'].prefix.lib64),
+ # HDF5 support
+ '-DDETECT_HDF5={0}'.format('ON' if '+hdf5' in spec else 'OFF')
+ ]
+
+ cmake_args.extend(std_cmake_args)
+ cmake('.', *cmake_args)
+
+ make()
+ make('install')
diff --git a/var/spack/repos/builtin/packages/arpack/package.py b/var/spack/repos/builtin/packages/arpack/package.py
index 75158776fe..91b5f06a4a 100644
--- a/var/spack/repos/builtin/packages/arpack/package.py
+++ b/var/spack/repos/builtin/packages/arpack/package.py
@@ -24,12 +24,12 @@
##############################################################################
from spack import *
import os
-import shutil
+
class Arpack(Package):
"""A collection of Fortran77 subroutines designed to solve large scale
- eigenvalue problems.
- """
+ eigenvalue problems."""
+
homepage = "http://www.caam.rice.edu/software/ARPACK/"
url = "http://www.caam.rice.edu/software/ARPACK/SRC/arpack96.tar.gz"
@@ -39,27 +39,35 @@ class Arpack(Package):
depends_on('lapack')
def patch(self):
- # Filter the cray makefile to make a spack one.
- shutil.move('ARMAKES/ARmake.CRAY', 'ARmake.inc')
makefile = FileFilter('ARmake.inc')
- # Be sure to use Spack F77 wrapper
- makefile.filter('^FC.*', 'FC = f77')
- makefile.filter('^FFLAGS.*', 'FFLAGS = -O2 -g')
+ # Section 1: Paths and Libraries
+
+ # Change the build directory
+ makefile.filter('^home.*', 'home = %s' % os.getcwd())
+
+ # Use external BLAS/LAPACK
+ makefile.filter('^BLASdir.*',
+ 'BLASdir = %s' % self.spec['blas'].prefix)
+ makefile.filter('^LAPACKdir.*',
+ 'LAPACKdir = %s' % self.spec['lapack'].prefix)
+
+ # Do not include the platform in the library name
+ makefile.filter('^PLAT.*', 'PLAT = ')
+ makefile.filter('^ARPACKLIB.*', 'ARPACKLIB = $(home)/libarpack.a')
- # Set up some variables.
- makefile.filter('^PLAT.*', 'PLAT = ')
- makefile.filter('^home.*', 'home = %s' % os.getcwd())
- makefile.filter('^BLASdir.*', 'BLASdir = %s' % self.spec['blas'].prefix)
- makefile.filter('^LAPACKdir.*', 'LAPACKdir = %s' % self.spec['lapack'].prefix)
+ # Section 2: Compilers
- # build the library in our own prefix.
- makefile.filter('^ARPACKLIB.*', 'ARPACKLIB = %s/libarpack.a' % os.getcwd())
+ # Be sure to use the Spack compiler wrapper
+ makefile.filter('^FC.*', 'FC = {0}'.format(os.environ['F77']))
+ makefile.filter('^FFLAGS.*', 'FFLAGS = -O2 -g -fPIC')
+ if not which('ranlib'):
+ makefile.filter('^RANLIB.*', 'RANLIB = touch')
def install(self, spec, prefix):
with working_dir('SRC'):
make('all')
- mkdirp(prefix.lib)
+ mkdir(prefix.lib)
install('libarpack.a', prefix.lib)
diff --git a/var/spack/repos/builtin/packages/ferret/package.py b/var/spack/repos/builtin/packages/ferret/package.py
new file mode 100644
index 0000000000..15ddfcee16
--- /dev/null
+++ b/var/spack/repos/builtin/packages/ferret/package.py
@@ -0,0 +1,103 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+
+from spack import *
+import os
+
+
+class Ferret(Package):
+ """Ferret is an interactive computer visualization and analysis environment
+ designed to meet the needs of oceanographers and meteorologists
+ analyzing large and complex gridded data sets."""
+ homepage = "http://ferret.noaa.gov/Ferret/"
+ url = "ftp://ftp.pmel.noaa.gov/ferret/pub/source/fer_source.tar.gz"
+
+ version('6.96', '51722027c864369f41bab5751dfff8cc',
+ url="ftp://ftp.pmel.noaa.gov/ferret/pub/source/fer_source.tar.gz")
+
+ depends_on("hdf5~mpi~fortran")
+ depends_on("netcdf~mpi")
+ depends_on("netcdf-fortran")
+ depends_on("readline")
+ depends_on("zlib")
+
+ def patch(self):
+ hdf5_prefix = self.spec['hdf5'].prefix
+ netcdff_prefix = self.spec['netcdf-fortran'].prefix
+ readline_prefix = self.spec['readline'].prefix
+ libz_prefix = self.spec['zlib'].prefix
+
+ filter_file(r'^BUILDTYPE.+',
+ 'BUILDTYPE = x86_64-linux',
+ 'FERRET/site_specific.mk')
+ filter_file(r'^INSTALL_FER_DIR.+',
+ 'INSTALL_FER_DIR = %s' % self.spec.prefix,
+ 'FERRET/site_specific.mk')
+ filter_file(r'^HDF5_DIR.+',
+ 'HDF5_DIR = %s' % hdf5_prefix,
+ 'FERRET/site_specific.mk')
+ filter_file(r'^NETCDF4_DIR.+',
+ 'NETCDF4_DIR = %s' % netcdff_prefix,
+ 'FERRET/site_specific.mk')
+ filter_file(r'^READLINE_DIR.+',
+ 'READLINE_DIR = %s' % readline_prefix,
+ 'FERRET/site_specific.mk')
+ filter_file(r'^LIBZ_DIR.+',
+ 'LIBZ_DIR = %s' % libz_prefix,
+ 'FERRET/site_specific.mk')
+ filter_file(r'^JAVA_HOME.+',
+ ' ',
+ 'FERRET/site_specific.mk')
+ filter_file(r'-lm',
+ '-lgfortran -lm',
+ 'FERRET/platform_specific.mk.x86_64-linux')
+
+ def install(self, spec, prefix):
+ hdf5_prefix = spec['hdf5'].prefix
+ netcdff_prefix = spec['netcdf-fortran'].prefix
+ netcdf_prefix = spec['netcdf'].prefix
+ libz_prefix = spec['zlib'].prefix
+ ln = which('ln')
+ ln('-sf',
+ hdf5_prefix + '/lib',
+ hdf5_prefix + '/lib64')
+ ln('-sf',
+ netcdff_prefix + '/lib',
+ netcdff_prefix + '/lib64')
+ ln('-sf',
+ netcdf_prefix + '/lib/libnetcdf.a',
+ netcdff_prefix + '/lib/libnetcdf.a')
+ ln('-sf',
+ netcdf_prefix + '/lib/libnetcdf.la',
+ netcdff_prefix + '/lib/libnetcdf.la')
+ ln('-sf',
+ libz_prefix + '/lib',
+ libz_prefix + '/lib64')
+ os.environ['LDFLAGS'] = '-lquadmath'
+ with working_dir('FERRET', create=False):
+ os.environ['LD_X11'] = '-L/usr/lib/X11 -lX11'
+ os.environ['HOSTTYPE'] = 'x86_64-linux'
+ make(parallel=False)
+ make("install")
diff --git a/var/spack/repos/builtin/packages/openblas/package.py b/var/spack/repos/builtin/packages/openblas/package.py
index 22e49daaa7..d09ebd6739 100644
--- a/var/spack/repos/builtin/packages/openblas/package.py
+++ b/var/spack/repos/builtin/packages/openblas/package.py
@@ -48,6 +48,13 @@ class Openblas(Package):
patch('make.patch')
def install(self, spec, prefix):
+ # As of 06/2016 there is no mechanism to specify that packages which
+ # depends on Blas/Lapack need C or/and Fortran symbols. For now
+ # require both.
+ if self.compiler.f77 is None:
+ raise InstallError('OpenBLAS requires both C and Fortran ',
+ 'compilers!')
+
# Configure fails to pick up fortran from FC=/abs/path/to/f77, but
# works fine with FC=/abs/path/to/gfortran.
# When mixing compilers make sure that
diff --git a/var/spack/repos/builtin/packages/openmpi/package.py b/var/spack/repos/builtin/packages/openmpi/package.py
index 0638628a6c..be3d1342fc 100644
--- a/var/spack/repos/builtin/packages/openmpi/package.py
+++ b/var/spack/repos/builtin/packages/openmpi/package.py
@@ -121,6 +121,13 @@ class Openmpi(Package):
return 'verbs'
def install(self, spec, prefix):
+ # As of 06/2016 there is no mechanism to specify that packages which
+ # depends on MPI need C or/and Fortran implementation. For now
+ # require both.
+ if (self.compiler.f77 is None) or (self.compiler.fc is None):
+ raise InstallError('OpenMPI requires both C and Fortran ',
+ 'compilers!')
+
config_args = ["--prefix=%s" % prefix,
"--with-hwloc=%s" % spec['hwloc'].prefix,
"--enable-shared",
diff --git a/var/spack/repos/builtin/packages/superlu/package.py b/var/spack/repos/builtin/packages/superlu/package.py
new file mode 100644
index 0000000000..c634c1d1ba
--- /dev/null
+++ b/var/spack/repos/builtin/packages/superlu/package.py
@@ -0,0 +1,54 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Superlu(Package):
+ """SuperLU is a general purpose library for the direct solution of large,
+ sparse, nonsymmetric systems of linear equations on high performance
+ machines. SuperLU is designed for sequential machines."""
+
+ homepage = "http://crd-legacy.lbl.gov/~xiaoye/SuperLU/#superlu"
+ url = "http://crd-legacy.lbl.gov/~xiaoye/SuperLU/superlu_5.2.1.tar.gz"
+
+ version('5.2.1', '3a1a9bff20cb06b7d97c46d337504447')
+
+ depends_on('blas')
+
+ def install(self, spec, prefix):
+ cmake_args = [
+ '-DCMAKE_POSITION_INDEPENDENT_CODE=ON',
+ # BLAS support
+ '-Denable_blaslib=OFF',
+ '-DBLAS_blas_LIBRARY={0}'.format(spec['blas'].blas_shared_lib)
+ ]
+
+ cmake_args.extend(std_cmake_args)
+
+ with working_dir('spack-build', create=True):
+ cmake('..', *cmake_args)
+
+ make()
+ make('install')
diff --git a/var/spack/repos/builtin/packages/tmux/package.py b/var/spack/repos/builtin/packages/tmux/package.py
index c46425c0d3..573ee38a79 100644
--- a/var/spack/repos/builtin/packages/tmux/package.py
+++ b/var/spack/repos/builtin/packages/tmux/package.py
@@ -24,26 +24,33 @@
##############################################################################
from spack import *
+
class Tmux(Package):
"""tmux is a terminal multiplexer. What is a terminal multiplexer? It lets
- you switch easily between several programs in one terminal, detach them (they
- keep running in the background) and reattach them to a different terminal. And
- do a lot more.
+ you switch easily between several programs in one terminal, detach them
+ (they keep running in the background) and reattach them to a different
+ terminal. And do a lot more.
"""
homepage = "http://tmux.github.io"
- url = "https://github.com/tmux/tmux/releases/download/2.1/tmux-2.1.tar.gz"
+ url = "https://github.com/tmux/tmux/releases/download/2.2/tmux-2.2.tar.gz"
version('1.9a', 'b07601711f96f1d260b390513b509a2d')
version('2.1', '74a2855695bccb51b6e301383ad4818c')
+ version('2.2', 'bd95ee7205e489c62c616bb7af040099')
depends_on('libevent')
depends_on('ncurses')
def install(self, spec, prefix):
+ pkg_config_path = ':'.join([
+ spec['libevent'].prefix,
+ spec['ncurses'].prefix
+ ])
+
configure(
"--prefix=%s" % prefix,
- "PKG_CONFIG_PATH=%s:%s" % (spec['libevent'].prefix, spec['ncurses'].prefix))
+ "PKG_CONFIG_PATH=%s" % pkg_config_path)
make()
make("install")
generated by cgit v1.2.3-70-g09d2 (git 2.46.0) at 2024-12-22 06:43:53 +0000