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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/poamsa/package.py | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/poamsa/package.py b/var/spack/repos/builtin/packages/poamsa/package.py new file mode 100644 index 0000000000..3148a10bbd --- /dev/null +++ b/var/spack/repos/builtin/packages/poamsa/package.py @@ -0,0 +1,50 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Poamsa(MakefilePackage): + """POA is Partial Order Alignment, a fast program for multiple sequence + alignment in bioinformatics. Its advantages are speed, scalability, + sensitivity, and the superior ability to handle branching / indels + in the alignment.""" + + homepage = "https://sourceforge.net/projects/poamsa" + url = "https://downloads.sourceforge.net/project/poamsa/poamsa/2.0/poaV2.tar.gz" + + version('2.0', '9e2eb270d4867114406f53dab1311b2b') + + def url_for_version(self, version): + url = "https://downloads.sourceforge.net/project/poamsa/poamsa/{0}/poaV{1}.tar.gz" + return url.format(version.dotted, version.up_to(1)) + + def build(self, spec, prefix): + make('poa') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + mkdirp(prefix.lib) + install('poa', prefix.bin) + install('liblpo.a', prefix.lib) |