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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/sabre/package.py | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/sabre/package.py b/var/spack/repos/builtin/packages/sabre/package.py new file mode 100644 index 0000000000..ecee1012f5 --- /dev/null +++ b/var/spack/repos/builtin/packages/sabre/package.py @@ -0,0 +1,48 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## + +from spack import * + + +class Sabre(MakefilePackage): + """Sabre is a tool that will demultiplex barcoded reads into separate + files. It will work on both single-end and paired-end data in fastq + format. It simply compares the provided barcodes with each read and + separates the read into its appropriate barcode file, after stripping + the barcode from the read (and also stripping the quality values of + the barcode bases). If a read does not have a recognized barcode, + then it is put into the unknown file. + """ + + homepage = "https://github.com/najoshi/sabre" + url = "https://github.com/najoshi/sabre" + + version('2013-09-27', git='https://github.com/najoshi/sabre.git', commit='039a55e500ba07b7e6432ea6ec2ddcfb3471d949') + + depends_on('zlib') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('sabre', prefix.bin) |