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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/stacks/package.py | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/stacks/package.py b/var/spack/repos/builtin/packages/stacks/package.py new file mode 100644 index 0000000000..df0d486b0b --- /dev/null +++ b/var/spack/repos/builtin/packages/stacks/package.py @@ -0,0 +1,48 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Stacks(AutotoolsPackage): + """Stacks is a software pipeline for building loci from short-read + sequences, such as those generated on the Illumina platform.""" + + homepage = "http://catchenlab.life.illinois.edu/stacks/" + url = "http://catchenlab.life.illinois.edu/stacks/source/stacks-1.46.tar.gz" + + version('1.46', '18b0568a4bba44fb4e5be0eb7ee2c08d') + + variant('sparsehash', default=True, description='Improve Stacks memory usage with SparseHash') + + depends_on('perl', type=('build', 'run')) + depends_on('sparsehash', when='+sparsehash') + + def configure_args(self): + args = [] + if '+sparsehash' in self.spec: + args.append('--enable-sparsehash') + else: + args.append('--disable-sparsehash') + return args |