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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/sparta/package.py | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/sparta/package.py b/var/spack/repos/builtin/packages/sparta/package.py new file mode 100644 index 0000000000..361c0253e2 --- /dev/null +++ b/var/spack/repos/builtin/packages/sparta/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Sparta(Package): + """small RNA-PARE Target Analyzer (sPARTA) is a tool which utilizes + high-throughput sequencing to profile genome-wide cleavage + products.""" + + homepage = "https://github.com/atulkakrana/sPARTA.github" + url = "https://github.com/atulkakrana/sPARTA/archive/1.25.tar.gz" + + version('1.25', '50fda66bf860f63ae8aef5e8fb997a75') + + depends_on('bowtie2') + depends_on('python@3:', type=('build', 'run')) + depends_on('py-scipy', type=('build', 'run')) + depends_on('py-numpy', type=('build', 'run')) + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('sPARTA.py', prefix.bin) + install('revFernoMap.py', prefix.bin) |