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2021-09-03New package: py-anytree (#25718)bernhardkaindl1-0/+18
It is required for running all tests of gtk-doc.
2021-09-03HiOp package: update magma dependency (#25721)Asher Mancinelli1-1/+2
2021-09-03m4: fix glitch in the test suite (#25702)bernhardkaindl1-0/+12
2021-09-03New package: getOrganelle@1.7.5.0 (#25725)Desmond Orton1-0/+33
2021-09-03SLEPc package: add gpu variants (#25760)Jose E. Roman1-1/+3
2021-09-03apcomp package: add versions 0.0.3 and 0.0.2 (#25767)Cyrus Harrison1-0/+2
2021-09-03RELION package: add versions 3.1.3 and 3.1.2 (#25772)pmargara1-0/+2
2021-09-03Mathematica package: add version 12.2.0 (#25791)Paul Spencer1-0/+3
2021-09-03rocblas: use AMDGPU_TARGETS instead of Tensile_ARCHITECTURE (#25778)Harmen Stoppels1-4/+8
2021-09-03Always disable leftover active environment after testsHarmen Stoppels1-12/+12
2021-09-03Don't error when removing scope that does not existHarmen Stoppels1-1/+2
2021-09-03update version for rocm-4.3.1 release (#25766)Sreenivasa Murthy Kolam43-70/+108
2021-09-03openssh: add v8.7 (#25774)bernhardkaindl1-1/+2
2021-09-03amrex: 21.09 (#25739)Weiqun Zhang1-0/+1
2021-09-03py-ansi2html: new package (#25741)Desmond Orton1-0/+20
2021-09-03py-cryolobm: add new package (#25748)Desmond Orton1-0/+21
2021-09-03py-lineenhancer: add new package (#25743)Desmond Orton1-0/+22
2021-09-03py-terminaltables: add new package (#25738)Desmond Orton1-0/+22
2021-09-03WarpX: 21.09 (#25771)Axel Huebl2-1/+4
Add the latest WarpX release.
2021-09-03libensemble: add tasmanian as optional dependency (#25762)Stephen Hudson1-0/+2
2021-09-03py-gooey: new package (#25763)Desmond Orton1-0/+25
2021-09-03py-colorclass: add new package (#25747)Desmond Orton1-0/+19
2021-09-03py-mrcfile: add new package (#25742)Desmond Orton1-0/+22
2021-09-03py-pathtools: add new package (#25749)Desmond Orton1-0/+19
2021-09-03silo: add build dependency on m4 (#25770)Olivier Cessenat1-0/+1
2021-09-02Correct typo in r-assertive-data-uk (#25754)jacorvar1-1/+1
`r-assertive-base` version contains a dot instead of a hyphen.
2021-09-02mfem: Update stand-alone test to use test stage directory (#25744)Tamara Dahlgren1-14/+33
2021-09-02py-submitit: add new package (#25699)Gianluca Ficarelli1-0/+21
2021-09-02gromacs: add v2021.3 (#25750)Gilles Gouaillardet1-0/+1
2021-09-02start of work to add spack audit packages-https checker (#25670)Vanessasaurus613-615/+712
This PR will add a new audit, specifically for spack package homepage urls (and eventually other kinds I suspect) to see if there is an http address that can be changed to https. Usage is as follows: ```bash $ spack audit packages-https <package> ``` And in list view: ```bash $ spack audit list generic: Generic checks relying on global variables configs: Sanity checks on compilers.yaml Sanity checks on packages.yaml packages: Sanity checks on specs used in directives packages-https: Sanity checks on https checks of package urls, etc. ``` I think it would be unwise to include with packages, because when run for all, since we do requests it takes a long time. I also like the idea of more well scoped checks - likely there will be other addresses for http/https within a package that we eventually check. For now, there are two error cases - one is when an https url is tried but there is some SSL error (or other error that means we cannot update to https): ```bash $ spack audit packages-https zoltan PKG-HTTPS-DIRECTIVES: 1 issue found 1. Error with attempting https for "zoltan": <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: Hostname mismatch, certificate is not valid for 'www.cs.sandia.gov'. (_ssl.c:1125)> ``` This is either not fixable, or could be fixed with a change to the url or (better) contacting the site owners to ask about some certificate or similar. The second case is when there is an http that needs to be https, which is a huge issue now, but hopefully not after this spack PR. ```bash $ spack audit packages-https xman Package "xman" uses http but has a valid https endpoint. ``` And then when a package is fixed: ```bash $ spack audit packages-https zlib PKG-HTTPS-DIRECTIVES: 0 issues found. ``` And that's mostly it. :) Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-09-01py-adios: add new version (#25746)Cody Balos1-1/+2
2021-09-01Bump nlohman-json and fix cmake args (#25504)Harmen Stoppels1-21/+18
* Bump nlohman-json and fix cmake args * Rename variant
2021-09-01Update versions for RAJA, CHAI, Umpire and camp (#25528)David Beckingsale6-50/+101
2021-09-01py-jupyterhub: add version: 1.4.1 (#24890)eugeneswalker2-11/+42
* py-jupyterhub: add version: 1.4.1 * dont need mako for latest release * sort dependencies * notebook isnt used for 1.4.1+ * add dependency on py-jupyter-telemetry; create new package py-jupyter-telemetry * py-jupyter-telemetry: declare missing dependencies * py-jupyterhub: need more specific depends_on before less specific * add py-json-logger; py-jupyter-telemetry: add depends_on for py-json-logger * Update var/spack/repos/builtin/packages/py-jupyter-telemetry/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * remove py-json-logger erroneously and duplicatively added * Update var/spack/repos/builtin/packages/py-jupyterhub/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * need py-alembic@1.4: for newest py-jupyterhub Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-01bugfix: R packages can be concretized together with clingo again (#25730)Harmen Stoppels1-1/+1
2021-09-01Add variant to allow unsupported compiler & CUDA combinations (#19736)David Beckingsale2-84/+84
Sometimes users need to be able to override the conflicts in `CudaPacakge`. This introduces a variant to enable/disable them.
2021-09-01Speed-up two unit tests by using builtin.mock instead of builtin (#25544)Harmen Stoppels1-2/+2
2021-09-01Adding new versions of redis (#25714)Nisarg Patel1-4/+9
2021-09-01nghttp2: add v1.44.0, fix build (#25605)Harmen Stoppels1-20/+20
2021-09-01allow building silo+mpi ^hdf5~mpi (#25724)Peter Scheibel1-2/+1
2021-08-31Legion: Add E4S testsuite stand alone test (#25285)Richarda Butler1-0/+41
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-08-31Papyrus: Add E4S testsuite stand alone test (#25324)Richarda Butler1-0/+53
2021-08-31acts: add v12.0.0, v12.0.1 (#25697)Hadrien G1-0/+2
2021-08-30Pipelines: disable power builds (#25704)Scott Wittenburg1-18/+18
2021-08-30[py-plotly] added version 5.2.2 (#25668)Jen Herting1-5/+11
* [py-plotly] added version 5.2.2 * [py-plotly] flake8 * [py-plotly] requests not required for new version
2021-08-30py-pythran: update checksum for patch (#25693)Adam J. Stewart2-3/+72
* Replace URL patch with file patch * Add comment explaining patch origin and purpose
2021-08-30Updates to Exawind packages (#25568)psakievich6-39/+79
2021-08-30asciidoc-py3: add v9.1.0, v9.0.5 and v9.0.4 (#25562)lorddavidiii1-0/+3
2021-08-30plasma: add version 21.8.29, migrate url (#25688)Piotr Luszczek1-4/+5
2021-08-30gaudi: update py-xenv dependency (#25457)Valentin Volkl1-1/+1
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