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2021-03-12chai: Add 2.3.0 version (#22254)Tomoyasu Nojiri1-0/+1
2021-03-12py-chainer: Add test method for ChainerMN (continued #21848, #21940) (#22189)a-saitoh-fj1-0/+49
* py-chainer: Add test method for ChainerMN (continued #21848, #21940) * py-chainer: Fixed the word in the message * py-chainer: Delete unnecessary imports * py-chainer: Incorporation of the measures pointed out in #21940 was insufficient.
2021-03-12mptensor: Add test method (#21712)kuramoto-fj1-0/+41
* mptensor: Add test method * mptensor: Reverted the receipe on merged style * mptensor: Changed """ to #
2021-03-12superlu-dist: Add e4s testsuite-inspired smoke test (#22237)Sergei Shudler1-0/+50
* Added a smoke test for superlu-dist recipe * Fixed small issues following a PR review
2021-03-11Add internal package options to Trilinos (#22205)Paul Kuberry1-1/+34
Adds several EpetraExt_BUILD_* options as well as an Amesos2_ENABLE_Basker option. Adds `none` as an option to `gotype=`, which should be among the options since 'none' is specifically handled later in the package definition. Adds `stokhos` and `trilinoscouplings` as options in spack which already are available in CMake for Trilinos (e.g. Trilinos_ENABLE_Stokhos:BOOL=)
2021-03-12py-pytest-html recipe (#22221)BerengerBerthoul2-0/+43
* py-pytest-html recipe * added missing deps + copyright * Update var/spack/repos/builtin/packages/py-pytest-html/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pytest-metadata/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-03-12Add newest versions of py-h5py (#22245)Thomas Kluyver1-5/+10
* Add newest versions of py-h5py * Update dependencies for py-h5py
2021-03-11r-rhdf5filters: Fix for aarch64 (#22074)Tomoyasu Nojiri1-0/+7
2021-03-11bind9: add missing dependencies (#22212)Tomoyasu Nojiri1-1/+7
2021-03-11ctffind: update url and version directive (#22039)Tomoyasu Nojiri1-3/+3
2021-03-11elpa: fix build of versions before 2020 with GCC >= 10 (#22182)Ye Luo1-4/+11
2021-03-11py-imageio: new version 2.9.0 (#22229)Andrew W Elble1-1/+3
2021-03-11eospac: add patch to fix selection of compiler flags (#21626)Gabriel Rockefeller2-0/+26
Patch eospac's Makefile.-linux-gnu.hashes to consider only `$(notdir $(F90))` when constructing a key to look up compiler flags in the _F90-CPUINFO_COMP_FLAGS associative array. This patch was accepted into eospac itself after the release of 6.4.2beta, so apply it only to 6.4.2beta and earlier releases.
2021-03-10cctools: add v7.2.1 (#22193)Benjamin Tovar1-1/+2
2021-03-10gearshifft: fix patch, add support for mkl and rocm (#22195)David Pape2-22/+31
- Fix faulty patch - Only use GEARSHIFFT_BACKEND_FFTW_PTHREADS if ~openmp - Explicitly disable float16 support - Use correct minimum required Boost version - Add variants for Intel MKL and ROCm rocfft
2021-03-10Pipelines: Fix issue that allowed failing jobs to pass (#22199)Scott Wittenburg1-1/+3
This is a workaround for an issue with how "spack install" is invoked from within "spack ci rebuild". The fact that we don't get an exception or even the actual returncode when using the object returned by spack.util.executable.which('spack') to install the target spec means we get no indication of failures about the install command itself. Instead we rely on the subsequent buildcache creation failure to fail the job.
2021-03-10meson: apply rpath patch for current versions (#22216)Michael Kuhn1-1/+1
meson now only selectively strips rpaths but can still strip required ones (like glib's pcre dependency).
2021-03-10vigra: add master branch (#22037)darmac1-0/+2
2021-03-10fix setup-env.sh on older linux zsh (#21721)Danny McClanahan2-2/+2
2021-03-10haveged: new package at v1.9.13 (#22127)darmac1-0/+15
2021-03-10gdk-pixbuf: add v2.42.2 (#22215)Michael Kuhn1-0/+2
2021-03-10gcc: fix nvptx conflict (#22214)Michael Kuhn1-1/+1
In the past, we only had the binutils variant, which included the bootstrapping flag. Now that we have a separate bootstrap variant, fix the nvptx conflict accordingly.
2021-03-10mii: add v1.0.4 (#21754)darmac1-3/+2
mii: 1.0.3 and 1.0.2 is deprecated, and v1.0.4 can replace them safely
2021-03-10gearshifft: add v0.4.0, remove v0.2.1-lw (#21437)h-denpo2-2/+26
Changed maintainer Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-03-10gnutls: add v3.6.15 (#22192)Andrew W Elble1-0/+1
2021-03-10salmon: add v1.4.0 (#22201)Andrew W Elble3-5/+71
devendored (most) dependencies, added missing dependencies. added resources and bypassed external fetching.
2021-03-10compadre: add new package (#22119)Paul Kuberry1-0/+58
2021-03-10pocl: updated llvm dependency to require not having flang (#22190)h-denpo1-1/+1
depends_on("llvm +clang +shared_libs -flang @6.0:11.0", when="@1.6")
2021-03-10lxc: fix install error (#22206)Tomoyasu Nojiri1-0/+6
2021-03-10rsyslog: fix install error (#22207)Tomoyasu Nojiri1-0/+5
2021-03-10satsuma2: fix install error (#22208)Tomoyasu Nojiri1-1/+1
2021-03-10warpx: add libs attribute to fix build on aarch64 (#22072)Tomoyasu Nojiri1-0/+10
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-03-10BLAS++: OpenMP for AppleClang (#22211)Axel Huebl1-0/+1
We need to install OpenMP for Apple's Clang.
2021-03-10abinit: updated patch for Fujitsu compilers (#22009)m-shunji2-38/+52
2021-03-09netcdf-c@4.7.3:4.7.4 patch detection of pnetcdf for spectrum-mpi (#22180)eugeneswalker2-0/+47
2021-03-09Bump version libnetworkit/networkit 8.0 -> 8.1 (#22194)Fabian Brandt2-0/+3
Co-authored-by: FBT <fabian.brandt-tumescheit@hu-berlin.de>
2021-03-09nalu-wind: add cuda variant (#22184)eugeneswalker1-80/+72
2021-03-09ReFrame 3.5.0 recipe (#22196)Vasileios Karakasis1-0/+1
2021-03-09Add pthread variant to kokkos-kernels (#22120)Paul Kuberry1-0/+1
2021-03-09Pacifica spack integration work (#20485)Evan Felix5-0/+95
* Add intel cluster package update2 for 2020 * add pacifica cli tools, and pager * remove boilerplate code * update flake8 lints * update flake8 lint, missed one * add a description for pager * Shorten a line * Remove whitespace * check on dependencies and move urls to proper place * Remove import package as it seems it is not required * add requests to the uploader config * remove blank Line * change to build and run for packages * add run and build to the packages * move from url method to pypi method * adjust requirements based on feedback from adamjstewart * remove python 3 requirement, and add setuptools-scm * remove dependence on python Co-authored-by: Evan Felix <evan.felix@pnnl.gov>
2021-03-09kicad: add v5.1.9 (#22123)Andrew W Elble2-4/+12
ngspice to v34
2021-03-09iptraf-ng: new package at v1.2.1 (#22155)darmac1-0/+22
2021-03-09hw-probe: new package at v1.5 (#22156)darmac1-0/+20
2021-03-09ike-scan: new package at v1.9 (#22160)darmac1-0/+15
2021-03-09libmacaroons: new package at v0.3.0 (#22142)darmac1-0/+26
2021-03-08scr: require dtcmp, switch from /tmp to /dev/shm (#22073)Adam Moody1-4/+16
2021-03-08DSQSS: Add test function, and Continuation of # 21666. (#22103)a-saitoh-fj2-0/+55
2021-03-08Fix `spack graph` when deptypes are filtered (#22121)Harmen Stoppels6-8/+84
2021-03-08Add `--vanilla` flag to r build system (#22166)Glenn Johnson1-0/+1
Unlike the other commands of the `R CMD` interface, the `INSTALL` command will read `Renviron` files. This can potentially break builds of r- packages, depending on what is set in the `Renviron` file. This PR adds the `--vanilla` flag to ensure that neither `Rprofile` nor `Renviron` files are read during Spack builds of r- packages.
2021-03-08casacore: add v3.4.0 (#22163)Martin Pokorny1-0/+1
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